HEADER TRANSFERASE 13-JUL-17 5WGB TITLE CRYSTAL STRUCTURE OF THE HUMAN MITOCHONDRIAL CYSTEINE DESULFURASE IN TITLE 2 COMPLEX WITH ISD11 AND E. COLI ACP1 PROTEIN AT 2.75A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYR MOTIF-CONTAINING PROTEIN 4; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ACYL CARRIER PROTEIN; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: ACP; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NFS1, NIFS, HUSSY-08; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: LYRM4, C6ORF149, ISD11, CGI-203; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O45:K1 (STRAIN S88 / EXPEC); SOURCE 17 ORGANISM_TAXID: 585035; SOURCE 18 STRAIN: S88 / EXPEC; SOURCE 19 GENE: ACPP, ECS88_1108; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN MITOCHONDRIAL CYSTEINE DESULFURSE LYR MOTIF CONTAINING PROTEIN KEYWDS 2 4 ACYL CARRIER PROTEIN 1 (E.COLI), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.BONIECKI,M.CYGLER REVDAT 3 04-OCT-23 5WGB 1 REMARK REVDAT 2 15-NOV-17 5WGB 1 SOURCE JRNL REMARK REVDAT 1 26-JUL-17 5WGB 0 JRNL AUTH M.T.BONIECKI,S.A.FREIBERT,U.MUHLENHOFF,R.LILL,M.CYGLER JRNL TITL STRUCTURE AND FUNCTIONAL DYNAMICS OF THE MITOCHONDRIAL FE/S JRNL TITL 2 CLUSTER SYNTHESIS COMPLEX. JRNL REF NAT COMMUN V. 8 1287 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29097656 JRNL DOI 10.1038/S41467-017-01497-1 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8668 - 6.4536 0.97 1465 142 0.1958 0.2103 REMARK 3 2 6.4536 - 5.1277 1.00 1452 143 0.2187 0.2368 REMARK 3 3 5.1277 - 4.4810 1.00 1442 139 0.1877 0.2439 REMARK 3 4 4.4810 - 4.0720 1.00 1423 139 0.1853 0.2327 REMARK 3 5 4.0720 - 3.7805 1.00 1423 138 0.2035 0.2661 REMARK 3 6 3.7805 - 3.5578 1.00 1441 140 0.2284 0.2714 REMARK 3 7 3.5578 - 3.3798 1.00 1405 138 0.2422 0.3276 REMARK 3 8 3.3798 - 3.2328 1.00 1428 139 0.2488 0.2978 REMARK 3 9 3.2328 - 3.1084 1.00 1402 136 0.2567 0.3295 REMARK 3 10 3.1084 - 3.0012 1.00 1426 139 0.2768 0.3580 REMARK 3 11 3.0012 - 2.9074 1.00 1416 138 0.2456 0.3319 REMARK 3 12 2.9074 - 2.8244 1.00 1403 137 0.2633 0.3349 REMARK 3 13 2.8244 - 2.7500 1.00 1415 137 0.2844 0.3334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3292 REMARK 3 ANGLE : 0.677 4470 REMARK 3 CHIRALITY : 0.047 534 REMARK 3 PLANARITY : 0.004 575 REMARK 3 DIHEDRAL : 5.743 1994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 65:431 OR RESID 501:501 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5458 58.3965 221.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.7324 T22: 0.5985 REMARK 3 T33: 0.4335 T12: -0.1184 REMARK 3 T13: -0.0712 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.9850 L22: 3.1322 REMARK 3 L33: 1.5437 L12: 0.6624 REMARK 3 L13: 0.3019 L23: -0.8127 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.0830 S13: 0.0093 REMARK 3 S21: -0.1331 S22: 0.0070 S23: 0.3407 REMARK 3 S31: 0.3846 S32: -0.1932 S33: -0.1527 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5522 32.1019 219.0884 REMARK 3 T TENSOR REMARK 3 T11: 1.4020 T22: 0.8876 REMARK 3 T33: 0.8215 T12: -0.3400 REMARK 3 T13: -0.2604 T23: 0.1299 REMARK 3 L TENSOR REMARK 3 L11: 5.1480 L22: 3.3328 REMARK 3 L33: 5.7404 L12: 0.3421 REMARK 3 L13: 2.7983 L23: 1.0188 REMARK 3 S TENSOR REMARK 3 S11: 0.6155 S12: 0.1758 S13: -0.2721 REMARK 3 S21: 0.0112 S22: -0.6737 S23: 0.1408 REMARK 3 S31: 0.7777 S32: -0.0119 S33: 0.0804 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 3:73 OR RESID 301:301 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.3381 28.6925 214.3707 REMARK 3 T TENSOR REMARK 3 T11: 1.2411 T22: 1.3373 REMARK 3 T33: 1.5030 T12: -0.3346 REMARK 3 T13: -0.1596 T23: 0.1991 REMARK 3 L TENSOR REMARK 3 L11: 7.5342 L22: 5.8201 REMARK 3 L33: 5.3662 L12: 4.1970 REMARK 3 L13: -2.0889 L23: -0.0407 REMARK 3 S TENSOR REMARK 3 S11: 0.3136 S12: 0.6095 S13: 0.0058 REMARK 3 S21: 0.1495 S22: -0.0303 S23: 1.0736 REMARK 3 S31: 0.7307 S32: -1.5926 S33: 0.0386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9875 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 32.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 0.3 M AMMONIUM REMARK 280 ACETATE 20 MM CALCIUM ACETATE 20 MM CACL2 19 % ISOPROPANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.42050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.65729 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.76700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.42050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.65729 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.76700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.42050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.65729 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.76700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.42050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.65729 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.76700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.42050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.65729 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.76700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.42050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.65729 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.76700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.31459 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 135.53400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 81.31459 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 135.53400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 81.31459 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 135.53400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 81.31459 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 135.53400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 81.31459 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 135.53400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 81.31459 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 135.53400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 VAL A 46 REMARK 465 PRO A 47 REMARK 465 ARG A 48 REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 HIS A 51 REMARK 465 MET A 52 REMARK 465 LEU A 53 REMARK 465 GLU A 54 REMARK 465 MET A 55 REMARK 465 LEU A 56 REMARK 465 ARG A 57 REMARK 465 PRO A 58 REMARK 465 LEU A 59 REMARK 465 TYR A 60 REMARK 465 MET A 61 REMARK 465 ASP A 62 REMARK 465 VAL A 63 REMARK 465 GLN A 64 REMARK 465 TYR A 85 REMARK 465 GLY A 86 REMARK 465 ASN A 87 REMARK 465 PRO A 88 REMARK 465 HIS A 89 REMARK 465 SER A 90 REMARK 465 ARG A 91 REMARK 465 THR A 92 REMARK 465 HIS A 93 REMARK 465 ALA A 94 REMARK 465 TYR A 95 REMARK 465 GLY A 96 REMARK 465 ARG A 275 REMARK 465 VAL A 276 REMARK 465 ARG A 277 REMARK 465 VAL A 278 REMARK 465 GLU A 279 REMARK 465 ALA A 280 REMARK 465 LEU A 281 REMARK 465 GLN A 282 REMARK 465 SER A 283 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 GLY A 286 REMARK 465 GLN A 287 REMARK 465 GLU A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 MET A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 TYR A 360 REMARK 465 VAL A 361 REMARK 465 GLU A 362 REMARK 465 GLY A 363 REMARK 465 GLU A 364 REMARK 465 SER A 365 REMARK 465 LEU A 366 REMARK 465 LEU A 367 REMARK 465 MET A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 LYS A 371 REMARK 465 ASP A 372 REMARK 465 VAL A 373 REMARK 465 ALA A 374 REMARK 465 LEU A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 GLY A 378 REMARK 465 SER A 379 REMARK 465 ALA A 380 REMARK 465 CYS A 381 REMARK 465 THR A 382 REMARK 465 SER A 383 REMARK 465 ALA A 384 REMARK 465 SER A 385 REMARK 465 LEU A 386 REMARK 465 GLU A 387 REMARK 465 PRO A 388 REMARK 465 SER A 389 REMARK 465 TYR A 390 REMARK 465 VAL A 391 REMARK 465 LEU A 392 REMARK 465 ARG A 393 REMARK 465 ALA A 394 REMARK 465 ILE A 395 REMARK 465 GLY A 396 REMARK 465 THR A 397 REMARK 465 ASP A 398 REMARK 465 GLU A 399 REMARK 465 ASP A 400 REMARK 465 LEU A 401 REMARK 465 ALA A 402 REMARK 465 HIS A 403 REMARK 465 ARG A 432 REMARK 465 LEU A 433 REMARK 465 ARG A 434 REMARK 465 GLU A 435 REMARK 465 MET A 436 REMARK 465 SER A 437 REMARK 465 PRO A 438 REMARK 465 LEU A 439 REMARK 465 TRP A 440 REMARK 465 GLU A 441 REMARK 465 MET A 442 REMARK 465 VAL A 443 REMARK 465 GLN A 444 REMARK 465 ASP A 445 REMARK 465 GLY A 446 REMARK 465 ILE A 447 REMARK 465 ASP A 448 REMARK 465 LEU A 449 REMARK 465 LYS A 450 REMARK 465 SER A 451 REMARK 465 ILE A 452 REMARK 465 LYS A 453 REMARK 465 TRP A 454 REMARK 465 THR A 455 REMARK 465 GLN A 456 REMARK 465 HIS A 457 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 78 REMARK 465 ASP B 79 REMARK 465 LYS B 80 REMARK 465 LEU B 81 REMARK 465 ILE B 82 REMARK 465 ILE B 83 REMARK 465 GLU B 84 REMARK 465 ASN B 85 REMARK 465 ARG B 86 REMARK 465 ASP B 87 REMARK 465 MET B 88 REMARK 465 PRO B 89 REMARK 465 ARG B 90 REMARK 465 THR B 91 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 GLY C 74 REMARK 465 HIS C 75 REMARK 465 GLN C 76 REMARK 465 ALA C 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 84 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 97 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 97 CZ3 CH2 REMARK 470 GLU A 98 CD OE1 OE2 REMARK 470 SER A 99 OG REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ARG A 119 NH1 NH2 REMARK 470 ILE A 121 CD1 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 187 CG CD NZ REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 LYS A 226 CD CE NZ REMARK 470 ARG A 272 CD NE CZ NH1 NH2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 GLU A 316 CD OE1 OE2 REMARK 470 LYS A 320 CD CE NZ REMARK 470 ILE A 322 CD1 REMARK 470 LYS A 324 CD CE NZ REMARK 470 GLU A 327 CD OE1 OE2 REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 330 CD1 REMARK 470 GLN A 331 CG CD OE1 NE2 REMARK 470 MET A 334 SD CE REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 PHE A 358 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 GLU A 424 CD OE1 OE2 REMARK 470 LYS A 425 CD CE NZ REMARK 470 ILE A 427 CG1 CG2 CD1 REMARK 470 GLN A 428 CD OE1 NE2 REMARK 470 LYS A 431 CD CE NZ REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 8 CD OE1 NE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 21 CD CE NZ REMARK 470 ARG B 22 CZ NH1 NH2 REMARK 470 ASN B 27 CG OD1 ND2 REMARK 470 ILE B 36 CD1 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 60 NZ REMARK 470 ARG B 61 NE CZ NH1 NH2 REMARK 470 ILE C 3 CG1 CG2 CD1 REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 GLU C 5 CG CD OE1 OE2 REMARK 470 ARG C 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 8 CB CG CD CE NZ REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 ILE C 10 CG1 CG2 CD1 REMARK 470 GLU C 13 CG CD OE1 OE2 REMARK 470 GLN C 14 OE1 NE2 REMARK 470 VAL C 17 CG1 CG2 REMARK 470 LYS C 18 CG CD CE NZ REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 GLU C 21 CD OE1 OE2 REMARK 470 ASN C 25 CG OD1 ND2 REMARK 470 GLU C 30 CD OE1 OE2 REMARK 470 LEU C 32 CG CD1 CD2 REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 GLU C 49 CG CD OE1 OE2 REMARK 470 ASP C 51 CG OD1 OD2 REMARK 470 THR C 52 OG1 CG2 REMARK 470 ILE C 54 CG1 CG2 CD1 REMARK 470 ASP C 56 CG OD1 OD2 REMARK 470 GLU C 57 CG CD OE1 OE2 REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 ILE C 69 CD1 REMARK 470 ILE C 72 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 36 O3 8Q1 C 301 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 413 -3.74 83.55 REMARK 500 HIS A 429 75.47 -69.39 REMARK 500 SER B 4 36.75 -159.36 REMARK 500 SER B 5 -148.60 46.45 REMARK 500 THR C 23 -151.85 -88.76 REMARK 500 ASN C 25 31.15 -95.97 REMARK 500 GLU C 53 74.86 -150.25 REMARK 500 GLU C 58 67.30 -105.58 REMARK 500 ALA C 59 -17.54 -157.26 REMARK 500 ILE C 62 53.99 -92.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8Q1 C 301 DBREF 5WGB A 56 457 UNP Q9Y697 NFS1_HUMAN 56 457 DBREF 5WGB B 1 91 UNP Q9HD34 LYRM4_HUMAN 1 91 DBREF 5WGB C 1 77 UNP B7MJ81 ACP_ECO45 2 78 SEQADV 5WGB MET A 32 UNP Q9Y697 INITIATING METHIONINE SEQADV 5WGB GLY A 33 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB SER A 34 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB SER A 35 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 36 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 37 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 38 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 39 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 40 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 41 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB SER A 42 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB SER A 43 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB GLY A 44 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB LEU A 45 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB VAL A 46 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB PRO A 47 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB ARG A 48 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB GLY A 49 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB SER A 50 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB HIS A 51 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB MET A 52 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB LEU A 53 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB GLU A 54 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB MET A 55 UNP Q9Y697 EXPRESSION TAG SEQADV 5WGB ALA B 11 UNP Q9HD34 SER 11 CONFLICT SEQRES 1 A 426 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 426 LEU VAL PRO ARG GLY SER HIS MET LEU GLU MET LEU ARG SEQRES 3 A 426 PRO LEU TYR MET ASP VAL GLN ALA THR THR PRO LEU ASP SEQRES 4 A 426 PRO ARG VAL LEU ASP ALA MET LEU PRO TYR LEU ILE ASN SEQRES 5 A 426 TYR TYR GLY ASN PRO HIS SER ARG THR HIS ALA TYR GLY SEQRES 6 A 426 TRP GLU SER GLU ALA ALA MET GLU ARG ALA ARG GLN GLN SEQRES 7 A 426 VAL ALA SER LEU ILE GLY ALA ASP PRO ARG GLU ILE ILE SEQRES 8 A 426 PHE THR SER GLY ALA THR GLU SER ASN ASN ILE ALA ILE SEQRES 9 A 426 LYS GLY VAL ALA ARG PHE TYR ARG SER ARG LYS LYS HIS SEQRES 10 A 426 LEU ILE THR THR GLN THR GLU HIS LYS CYS VAL LEU ASP SEQRES 11 A 426 SER CYS ARG SER LEU GLU ALA GLU GLY PHE GLN VAL THR SEQRES 12 A 426 TYR LEU PRO VAL GLN LYS SER GLY ILE ILE ASP LEU LYS SEQRES 13 A 426 GLU LEU GLU ALA ALA ILE GLN PRO ASP THR SER LEU VAL SEQRES 14 A 426 SER VAL MET THR VAL ASN ASN GLU ILE GLY VAL LYS GLN SEQRES 15 A 426 PRO ILE ALA GLU ILE GLY ARG ILE CYS SER SER ARG LYS SEQRES 16 A 426 VAL TYR PHE HIS THR ASP ALA ALA GLN ALA VAL GLY LYS SEQRES 17 A 426 ILE PRO LEU ASP VAL ASN ASP MET LYS ILE ASP LEU MET SEQRES 18 A 426 SER ILE SER GLY HIS LYS ILE TYR GLY PRO LYS GLY VAL SEQRES 19 A 426 GLY ALA ILE TYR ILE ARG ARG ARG PRO ARG VAL ARG VAL SEQRES 20 A 426 GLU ALA LEU GLN SER GLY GLY GLY GLN GLU ARG GLY MET SEQRES 21 A 426 ARG SER GLY THR VAL PRO THR PRO LEU VAL VAL GLY LEU SEQRES 22 A 426 GLY ALA ALA CYS GLU VAL ALA GLN GLN GLU MET GLU TYR SEQRES 23 A 426 ASP HIS LYS ARG ILE SER LYS LEU SER GLU ARG LEU ILE SEQRES 24 A 426 GLN ASN ILE MET LYS SER LEU PRO ASP VAL VAL MET ASN SEQRES 25 A 426 GLY ASP PRO LYS HIS HIS TYR PRO GLY CYS ILE ASN LEU SEQRES 26 A 426 SER PHE ALA TYR VAL GLU GLY GLU SER LEU LEU MET ALA SEQRES 27 A 426 LEU LYS ASP VAL ALA LEU SER SER GLY SER ALA CYS THR SEQRES 28 A 426 SER ALA SER LEU GLU PRO SER TYR VAL LEU ARG ALA ILE SEQRES 29 A 426 GLY THR ASP GLU ASP LEU ALA HIS SER SER ILE ARG PHE SEQRES 30 A 426 GLY ILE GLY ARG PHE THR THR GLU GLU GLU VAL ASP TYR SEQRES 31 A 426 THR VAL GLU LYS CYS ILE GLN HIS VAL LYS ARG LEU ARG SEQRES 32 A 426 GLU MET SER PRO LEU TRP GLU MET VAL GLN ASP GLY ILE SEQRES 33 A 426 ASP LEU LYS SER ILE LYS TRP THR GLN HIS SEQRES 1 B 91 MET ALA ALA SER SER ARG ALA GLN VAL LEU ALA LEU TYR SEQRES 2 B 91 ARG ALA MET LEU ARG GLU SER LYS ARG PHE SER ALA TYR SEQRES 3 B 91 ASN TYR ARG THR TYR ALA VAL ARG ARG ILE ARG ASP ALA SEQRES 4 B 91 PHE ARG GLU ASN LYS ASN VAL LYS ASP PRO VAL GLU ILE SEQRES 5 B 91 GLN THR LEU VAL ASN LYS ALA LYS ARG ASP LEU GLY VAL SEQRES 6 B 91 ILE ARG ARG GLN VAL HIS ILE GLY GLN LEU TYR SER THR SEQRES 7 B 91 ASP LYS LEU ILE ILE GLU ASN ARG ASP MET PRO ARG THR SEQRES 1 C 77 SER THR ILE GLU GLU ARG VAL LYS LYS ILE ILE GLY GLU SEQRES 2 C 77 GLN LEU GLY VAL LYS GLN GLU GLU VAL THR ASN ASN ALA SEQRES 3 C 77 SER PHE VAL GLU ASP LEU GLY ALA ASP SER LEU ASP THR SEQRES 4 C 77 VAL GLU LEU VAL MET ALA LEU GLU GLU GLU PHE ASP THR SEQRES 5 C 77 GLU ILE PRO ASP GLU GLU ALA GLU LYS ILE THR THR VAL SEQRES 6 C 77 GLN ALA ALA ILE ASP TYR ILE ASN GLY HIS GLN ALA HET PLP A 501 15 HET 8Q1 C 301 34 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 8Q1 S-[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 8Q1 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECANETHIOATE HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN 8Q1 S-DODECANOYL-4'-PHOSPHOPANTETHEINE FORMUL 4 PLP C8 H10 N O6 P FORMUL 5 8Q1 C23 H45 N2 O8 P S HELIX 1 AA1 ASP A 70 ILE A 82 1 13 HELIX 2 AA2 GLU A 98 GLY A 115 1 18 HELIX 3 AA3 ASP A 117 ARG A 119 5 3 HELIX 4 AA4 GLY A 126 TYR A 142 1 17 HELIX 5 AA5 HIS A 156 GLU A 169 1 14 HELIX 6 AA6 ASP A 185 ILE A 193 1 9 HELIX 7 AA7 PRO A 214 LYS A 226 1 13 HELIX 8 AA8 PRO A 297 LEU A 337 1 41 HELIX 9 AA9 ASP A 345 HIS A 349 5 5 HELIX 10 AB1 THR A 415 GLN A 428 1 14 HELIX 11 AB2 ARG B 6 LYS B 21 1 16 HELIX 12 AB3 ALA B 25 ASN B 43 1 19 HELIX 13 AB4 ASP B 48 TYR B 76 1 29 HELIX 14 AB5 VAL C 7 GLY C 16 1 10 HELIX 15 AB6 ASP C 35 ASP C 51 1 17 HELIX 16 AB7 THR C 64 ASN C 73 1 10 SHEET 1 AA1 7 ILE A 121 THR A 124 0 SHEET 2 AA1 7 GLY A 266 ILE A 270 -1 O ILE A 268 N ILE A 122 SHEET 3 AA1 7 LEU A 251 SER A 255 -1 N ILE A 254 O ALA A 267 SHEET 4 AA1 7 TYR A 228 ASP A 232 1 N THR A 231 O SER A 253 SHEET 5 AA1 7 THR A 197 SER A 201 1 N VAL A 200 O HIS A 230 SHEET 6 AA1 7 HIS A 148 THR A 152 1 N ILE A 150 O SER A 201 SHEET 7 AA1 7 GLN A 172 LEU A 176 1 O LEU A 176 N THR A 151 SHEET 1 AA2 3 VAL A 341 MET A 342 0 SHEET 2 AA2 3 CYS A 353 SER A 357 -1 O SER A 357 N VAL A 341 SHEET 3 AA2 3 SER A 405 GLY A 409 -1 O PHE A 408 N ILE A 354 LINK NZ LYS A 258 C4A PLP A 501 1555 1555 1.34 LINK OG SER C 36 P24 8Q1 C 301 1555 1555 1.60 SITE 1 AC1 11 GLY A 126 ALA A 127 THR A 128 HIS A 156 SITE 2 AC1 11 ASP A 232 ALA A 234 GLN A 235 SER A 255 SITE 3 AC1 11 HIS A 257 LYS A 258 LYS A 263 SITE 1 AC2 10 TYR B 31 ILE B 36 ALA B 39 PHE B 40 SITE 2 AC2 10 ASN B 43 LYS B 44 ILE B 52 LEU B 55 SITE 3 AC2 10 ASP B 62 SER C 36 CRYST1 140.841 140.841 203.301 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007100 0.004099 0.000000 0.00000 SCALE2 0.000000 0.008199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004919 0.00000