HEADER DNA BINDING PROTEIN 17-JUL-17 5WHG TITLE VMS1 MITOCHONDRIAL LOCALIZATION CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VMS1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VCP/CDC48-ASSOCIATED MITOCHONDRIAL STRESS-RESPONSIVE PROTEIN COMPND 5 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: VMS1, YDR049W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROS SIGNALLING, OXIDATIVE STRESS, MITOCHONDRIAL QUALITY CONTROL, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.K.FREDRICKSON,H.L.SCHUBERT,J.RUTTER,C.P.HILL REVDAT 3 01-JAN-20 5WHG 1 REMARK REVDAT 2 29-NOV-17 5WHG 1 JRNL REVDAT 1 15-NOV-17 5WHG 0 JRNL AUTH J.R.NIELSON,E.K.FREDRICKSON,T.C.WALLER,O.Z.RENDON, JRNL AUTH 2 H.L.SCHUBERT,Z.LIN,C.P.HILL,J.RUTTER JRNL TITL STEROL OXIDATION MEDIATES STRESS-RESPONSIVE VMS1 JRNL TITL 2 TRANSLOCATION TO MITOCHONDRIA. JRNL REF MOL. CELL V. 68 673 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 29149595 JRNL DOI 10.1016/J.MOLCEL.2017.10.022 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0629 - 6.4641 0.99 1198 133 0.2151 0.2753 REMARK 3 2 6.4641 - 5.1473 1.00 1188 140 0.2075 0.2758 REMARK 3 3 5.1473 - 4.5014 1.00 1191 134 0.1479 0.2019 REMARK 3 4 4.5014 - 4.0921 1.00 1238 140 0.1466 0.1911 REMARK 3 5 4.0921 - 3.8000 1.00 1200 144 0.1585 0.2040 REMARK 3 6 3.8000 - 3.5767 1.00 1202 144 0.1837 0.2439 REMARK 3 7 3.5767 - 3.3981 1.00 1198 136 0.1849 0.2641 REMARK 3 8 3.3981 - 3.2505 1.00 1212 138 0.2072 0.2807 REMARK 3 9 3.2505 - 3.1257 1.00 1181 133 0.2012 0.2628 REMARK 3 10 3.1257 - 3.0180 1.00 1188 140 0.1777 0.2257 REMARK 3 11 3.0180 - 2.9238 1.00 1234 128 0.1879 0.2709 REMARK 3 12 2.9238 - 2.8404 1.00 1207 132 0.2126 0.2690 REMARK 3 13 2.8404 - 2.7657 1.00 1182 134 0.2708 0.3314 REMARK 3 14 2.7657 - 2.6983 1.00 1200 144 0.3056 0.3589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1770 REMARK 3 ANGLE : 0.972 2378 REMARK 3 CHIRALITY : 0.049 264 REMARK 3 PLANARITY : 0.006 294 REMARK 3 DIHEDRAL : 13.175 1068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.7007 17.3242 58.6358 REMARK 3 T TENSOR REMARK 3 T11: 0.7968 T22: 0.5182 REMARK 3 T33: 0.7214 T12: 0.1991 REMARK 3 T13: 0.0109 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 2.2558 L22: 5.6072 REMARK 3 L33: 6.9590 L12: -1.5529 REMARK 3 L13: -0.1731 L23: -0.8464 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.2923 S13: 0.1191 REMARK 3 S21: 0.6443 S22: 0.3049 S23: -0.0146 REMARK 3 S31: -0.6603 S32: -0.0663 S33: -0.2648 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED AGAINST I+,SIGI+, I-, SIGI- REMARK 4 REMARK 4 5WHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : RH COATED FLAT REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-24% PEG MME 2000, 100 MM TRIS PH REMARK 280 8.5, AND 0.2 M TMAO, EVAPORATION, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.92200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.46100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.46100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.92200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MSE A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 MSE A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 PHE A 68 REMARK 465 ASP A 69 REMARK 465 ASN A 70 REMARK 465 VAL A 71 REMARK 465 MSE A 72 REMARK 465 ARG A 73 REMARK 465 PHE A 81 REMARK 465 ASP A 82 REMARK 465 SER A 83 REMARK 465 ARG A 84 REMARK 465 ASN A 85 REMARK 465 GLU A 86 REMARK 465 GLN A 87 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 LEU A 107 REMARK 465 ASP A 108 REMARK 465 ILE A 109 REMARK 465 LEU A 110 REMARK 465 SER A 111 REMARK 465 VAL A 112 REMARK 465 GLU A 113 REMARK 465 GLU A 114 REMARK 465 PHE A 115 REMARK 465 ASP A 116 REMARK 465 ALA A 117 REMARK 465 LEU A 118 REMARK 465 ILE A 119 REMARK 465 SER A 120 REMARK 465 LYS A 121 REMARK 465 GLU A 122 REMARK 465 HIS A 123 REMARK 465 GLY A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 SER A 127 REMARK 465 GLU A 128 REMARK 465 ASP A 129 REMARK 465 GLU A 130 REMARK 465 ASN A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 GLU A 135 REMARK 465 GLN A 136 REMARK 465 THR A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 ASP A 140 REMARK 465 HIS A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 SER A 144 REMARK 465 GLU A 145 REMARK 465 GLU A 146 REMARK 465 ALA A 147 REMARK 465 SER A 148 REMARK 465 ASP A 149 REMARK 465 ARG A 150 REMARK 465 ASP A 151 REMARK 465 PRO A 152 REMARK 465 ASP A 153 REMARK 465 LEU A 154 REMARK 465 GLN A 155 REMARK 465 THR A 156 REMARK 465 ASN A 157 REMARK 465 ASN A 158 REMARK 465 TYR A 159 REMARK 465 MSE A 160 REMARK 465 GLU A 161 REMARK 465 THR A 162 REMARK 465 ILE A 163 REMARK 465 ILE A 164 REMARK 465 GLU A 165 REMARK 465 ASN A 166 REMARK 465 ASP A 167 REMARK 465 LEU A 168 REMARK 465 GLN A 169 REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 GLY A 172 REMARK 465 PHE A 173 REMARK 465 GLN A 174 REMARK 465 LYS A 175 REMARK 465 ASP A 176 REMARK 465 GLU A 177 REMARK 465 SER A 178 REMARK 465 ASP A 179 REMARK 465 ALA A 180 REMARK 465 ILE A 181 REMARK 465 SER A 182 REMARK 465 HIS A 183 REMARK 465 ILE A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 GLN A 187 REMARK 465 LEU A 198 REMARK 465 GLN A 199 REMARK 465 LYS A 200 REMARK 465 ASN A 201 REMARK 465 GLU A 202 REMARK 465 VAL A 258 REMARK 465 LYS A 259 REMARK 465 GLY A 260 REMARK 465 ASN A 261 REMARK 465 ALA A 262 REMARK 465 HIS A 263 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 THR A 287 REMARK 465 ARG A 288 REMARK 465 ARG A 289 REMARK 465 LYS A 290 REMARK 465 GLN A 291 REMARK 465 GLY A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 GLN A 295 REMARK 465 SER A 296 REMARK 465 ALA A 297 REMARK 465 MSE A 298 REMARK 465 ASP A 299 REMARK 465 ASN A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 ALA A 305 REMARK 465 ASN A 306 REMARK 465 SER A 307 REMARK 465 ALA A 308 REMARK 465 GLY A 309 REMARK 465 SER A 310 REMARK 465 ALA A 311 REMARK 465 LEU A 312 REMARK 465 ARG A 313 REMARK 465 ARG A 314 REMARK 465 TYR A 315 REMARK 465 ASN A 316 REMARK 465 GLU A 317 REMARK 465 PRO A 398 REMARK 465 GLU A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 ALA A 402 REMARK 465 VAL A 403 REMARK 465 LYS A 404 REMARK 465 GLU A 405 REMARK 465 THR A 406 REMARK 465 VAL A 407 REMARK 465 GLN A 408 REMARK 465 LYS A 409 REMARK 465 LEU A 410 REMARK 465 GLU A 411 REMARK 465 VAL A 412 REMARK 465 SER A 413 REMARK 465 ASN A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 ASP A 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 39.83 -157.80 REMARK 500 TYR A 91 -18.45 -151.27 REMARK 500 SER A 195 -85.48 -174.62 REMARK 500 LEU A 256 -158.71 -130.05 REMARK 500 ASP A 356 91.78 -69.66 REMARK 500 THR A 358 -154.97 -119.64 REMARK 500 PRO A 371 27.14 -76.08 REMARK 500 ASN A 375 -133.54 -90.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 CYS A 77 SG 88.2 REMARK 620 3 HIS A 90 NE2 108.3 88.0 REMARK 620 4 HIS A 96 ND1 110.7 141.1 115.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 DBREF 5WHG A 1 417 UNP Q04311 VMS1_YEAST 1 417 SEQADV 5WHG GLY A -3 UNP Q04311 EXPRESSION TAG SEQADV 5WHG ALA A -2 UNP Q04311 EXPRESSION TAG SEQADV 5WHG MSE A -1 UNP Q04311 EXPRESSION TAG SEQADV 5WHG GLY A 0 UNP Q04311 EXPRESSION TAG SEQADV 5WHG A UNP Q04311 SER 38 DELETION SEQADV 5WHG A UNP Q04311 THR 39 DELETION SEQADV 5WHG A UNP Q04311 LEU 40 DELETION SEQADV 5WHG A UNP Q04311 ARG 41 DELETION SEQADV 5WHG A UNP Q04311 GLU 42 DELETION SEQADV 5WHG A UNP Q04311 VAL 43 DELETION SEQADV 5WHG A UNP Q04311 GLU 44 DELETION SEQADV 5WHG A UNP Q04311 VAL 45 DELETION SEQADV 5WHG A UNP Q04311 GLU 46 DELETION SEQADV 5WHG A UNP Q04311 LYS 47 DELETION SEQADV 5WHG A UNP Q04311 THR 48 DELETION SEQADV 5WHG A UNP Q04311 SER 49 DELETION SEQADV 5WHG A UNP Q04311 ASP 50 DELETION SEQADV 5WHG A UNP Q04311 ASN 51 DELETION SEQADV 5WHG A UNP Q04311 ASP 52 DELETION SEQADV 5WHG A UNP Q04311 ARG 53 DELETION SEQADV 5WHG A UNP Q04311 ASN 54 DELETION SEQADV 5WHG A UNP Q04311 LYS 55 DELETION SEQADV 5WHG A UNP Q04311 GLU 56 DELETION SEQADV 5WHG A UNP Q04311 SER 57 DELETION SEQADV 5WHG A UNP Q04311 GLY 58 DELETION SEQADV 5WHG A UNP Q04311 ASP 59 DELETION SEQADV 5WHG A UNP Q04311 LEU 60 DELETION SEQADV 5WHG A UNP Q04311 GLN 61 DELETION SEQADV 5WHG A UNP Q04311 ILE 62 DELETION SEQADV 5WHG A UNP Q04311 ALA 63 DELETION SEQADV 5WHG A UNP Q04311 ARG 64 DELETION SEQADV 5WHG A UNP Q04311 LYS 65 DELETION SEQADV 5WHG A UNP Q04311 LYS 66 DELETION SEQADV 5WHG A UNP Q04311 VAL 67 DELETION SEQADV 5WHG A UNP Q04311 THR 68 DELETION SEQADV 5WHG A UNP Q04311 SER 69 DELETION SEQRES 1 A 389 GLY ALA MSE GLY MSE ASN SER GLN LYS ALA SER LYS MSE SEQRES 2 A 389 THR GLY SER LEU LYS LYS ASN ASP LEU TYR ILE PHE ASP SEQRES 3 A 389 LEU SER GLU GLN LEU LEU ASN SER LEU LYS LEU MSE SER SEQRES 4 A 389 PHE ASP ASN VAL MSE ARG CYS SER VAL CYS GLN MSE SER SEQRES 5 A 389 PHE ASP SER ARG ASN GLU GLN LYS ALA HIS TYR GLN THR SEQRES 6 A 389 ASP TYR HIS LEU MSE ASN VAL LYS ARG ASN LEU ARG GLY SEQRES 7 A 389 LEU ASP ILE LEU SER VAL GLU GLU PHE ASP ALA LEU ILE SEQRES 8 A 389 SER LYS GLU HIS GLY ILE LYS SER GLU ASP GLU ASN SER SEQRES 9 A 389 GLY GLY GLU GLN THR SER SER ASP HIS GLU GLU SER GLU SEQRES 10 A 389 GLU ALA SER ASP ARG ASP PRO ASP LEU GLN THR ASN ASN SEQRES 11 A 389 TYR MSE GLU THR ILE ILE GLU ASN ASP LEU GLN LYS LEU SEQRES 12 A 389 GLY PHE GLN LYS ASP GLU SER ASP ALA ILE SER HIS ILE SEQRES 13 A 389 ASN THR GLN SER PRO TYR ILE TYR PHE LYS SER LYS TYR SEQRES 14 A 389 LEU GLN LYS ASN GLU VAL LEU ALA ILE TYR LYS SER LEU SEQRES 15 A 389 PHE ASN LYS ARG SER LEU SER ASN PRO ASN GLU ALA LEU SEQRES 16 A 389 THR PHE TRP ASN SER GLN GLU ASN PRO MSE ALA ILE SER SEQRES 17 A 389 ALA LEU PHE MSE VAL GLY GLY GLY HIS PHE ALA GLY ALA SEQRES 18 A 389 ILE VAL SER HIS GLN ARG LEU ASN VAL LYS GLY ASN ALA SEQRES 19 A 389 HIS LYS LYS ASP GLU THR LEU ILE GLU GLN ALA VAL ASN SEQRES 20 A 389 PHE LEU GLU HIS LYS THR PHE HIS ARG TYR THR THR ARG SEQRES 21 A 389 ARG LYS GLN GLY GLY SER GLN SER ALA MSE ASP ASN ALA SEQRES 22 A 389 LYS GLY LYS ALA ASN SER ALA GLY SER ALA LEU ARG ARG SEQRES 23 A 389 TYR ASN GLU SER ALA LEU LYS THR ASP ILE GLN GLY VAL SEQRES 24 A 389 LEU LYS ASP TRP GLU PRO TYR LEU SER LYS CYS ASP ASN SEQRES 25 A 389 ILE PHE ILE ARG ALA ARG ASN VAL SER ASP LYS LYS ILE SEQRES 26 A 389 PHE THR ASP ASN THR VAL LEU ASN LYS GLY ASP GLU ARG SEQRES 27 A 389 ILE LYS SER PHE PRO PHE THR THR ASN ARG PRO THR VAL SEQRES 28 A 389 LEU GLU LEU LYS LYS ALA TRP CYS GLU LEU SER TYR LEU SEQRES 29 A 389 LYS ILE LEU PRO LYS PRO GLU PRO LEU ALA VAL LYS GLU SEQRES 30 A 389 THR VAL GLN LYS LEU GLU VAL SER ASN LYS LYS ASP MODRES 5WHG MSE A 34 MET MODIFIED RESIDUE MODRES 5WHG MSE A 79 MET MODIFIED RESIDUE MODRES 5WHG MSE A 98 MET MODIFIED RESIDUE MODRES 5WHG MSE A 233 MET MODIFIED RESIDUE MODRES 5WHG MSE A 240 MET MODIFIED RESIDUE HET MSE A 34 8 HET MSE A 79 8 HET MSE A 98 8 HET MSE A 233 8 HET MSE A 240 8 HET ZN A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *29(H2 O) HELIX 1 AA1 LYS A 14 TYR A 19 5 6 HELIX 2 AA2 SER A 24 LEU A 31 1 8 HELIX 3 AA3 THR A 93 ARG A 105 1 13 HELIX 4 AA4 SER A 209 PHE A 211 5 3 HELIX 5 AA5 ASN A 218 ASN A 227 1 10 HELIX 6 AA6 THR A 268 ALA A 273 1 6 HELIX 7 AA7 ALA A 319 TRP A 331 1 13 HELIX 8 AA8 TRP A 331 LYS A 337 1 7 HELIX 9 AA9 ASN A 347 LYS A 352 1 6 HELIX 10 AB1 ILE A 353 THR A 355 5 3 HELIX 11 AB2 THR A 378 TYR A 391 1 14 SHEET 1 AA1 4 LYS A 32 LEU A 33 0 SHEET 2 AA1 4 TYR A 190 LYS A 194 -1 O LYS A 194 N LYS A 32 SHEET 3 AA1 4 LEU A 204 TYR A 207 -1 O LEU A 204 N PHE A 193 SHEET 4 AA1 4 LYS A 393 ILE A 394 -1 O LYS A 393 N ALA A 205 SHEET 1 AA2 5 ASN A 275 HIS A 283 0 SHEET 2 AA2 5 HIS A 245 SER A 252 -1 N SER A 252 O ASN A 275 SHEET 3 AA2 5 ILE A 235 GLY A 242 -1 N SER A 236 O VAL A 251 SHEET 4 AA2 5 ILE A 341 ARG A 344 1 O PHE A 342 N PHE A 239 SHEET 5 AA2 5 ILE A 367 LYS A 368 1 O LYS A 368 N ILE A 341 LINK C LEU A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N SER A 35 1555 1555 1.33 LINK SG CYS A 74 ZN ZN A 501 1555 1555 2.41 LINK SG CYS A 77 ZN ZN A 501 1555 1555 2.33 LINK C GLN A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N SER A 80 1555 1555 1.33 LINK NE2 HIS A 90 ZN ZN A 501 1555 1555 2.60 LINK ND1 HIS A 96 ZN ZN A 501 1555 1555 1.89 LINK C LEU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N ASN A 99 1555 1555 1.33 LINK C PRO A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N ALA A 234 1555 1555 1.33 LINK C PHE A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N VAL A 241 1555 1555 1.33 SITE 1 AC1 4 CYS A 74 CYS A 77 HIS A 90 HIS A 96 CRYST1 62.864 62.864 154.383 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015907 0.009184 0.000000 0.00000 SCALE2 0.000000 0.018368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006477 0.00000