HEADER HYDROLASE 18-JUL-17 5WHW TITLE USING SOUND PULSES TO SOLVE THE CRYSTAL HARVESTING BOTTLENECK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 106-384; COMPND 5 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 6 EC: 3.4.21.64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_TAXID: 37998 KEYWDS CRYSTAL HARVESTING, DRUG DISCOVERY, ACOUSTIC DROPLET EJECTION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.SOARES,H.M.BRENNAN,R.NATARAJAN,L.MCCARTHY,L.LEROY REVDAT 5 04-OCT-23 5WHW 1 REMARK REVDAT 4 04-DEC-19 5WHW 1 REMARK REVDAT 3 17-OCT-18 5WHW 1 JRNL REVDAT 2 20-SEP-17 5WHW 1 REMARK REVDAT 1 02-AUG-17 5WHW 0 JRNL AUTH Y.N.SAMARA,H.M.BRENNAN,L.MCCARTHY,M.T.BOLLARD,D.LASPINA, JRNL AUTH 2 J.M.WLODEK,S.L.CAMPOS,R.NATARAJAN,K.GOFRON,S.MCSWEENEY, JRNL AUTH 3 A.S.SOARES,L.LEROY JRNL TITL USING SOUND PULSES TO SOLVE THE CRYSTAL-HARVESTING JRNL TITL 2 BOTTLENECK. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 986 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30289409 JRNL DOI 10.1107/S2059798318011506 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2220 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1992 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3035 ; 2.102 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4597 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.551 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;36.836 ;23.936 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;12.873 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2692 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1172 ; 1.243 ; 1.251 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1171 ; 1.240 ; 1.250 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1481 ; 1.663 ; 1.876 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1482 ; 1.664 ; 1.878 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 2.284 ; 1.503 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1048 ; 2.283 ; 1.503 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1544 ; 3.303 ; 2.163 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2894 ; 6.581 ;12.929 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2666 ; 5.533 ;11.406 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 57.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5FON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM NITRATE, 0.16 M CALCIUM REMARK 280 CHLORIDE, 0.2 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.66150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.85950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.85950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.49225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.85950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.85950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.83075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.85950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.85950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.49225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.85950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.85950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.83075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 665 O HOH A 685 1.98 REMARK 500 O HOH A 414 O HOH A 691 2.12 REMARK 500 O HOH A 494 O HOH A 706 2.14 REMARK 500 O HOH A 733 O HOH A 742 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 24 CZ TYR A 24 OH 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 26 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 60 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 187 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -146.88 -165.27 REMARK 500 ALA A 166 -9.92 -57.54 REMARK 500 ASN A 270 73.96 -103.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 16 O REMARK 620 2 ASP A 260 OD1 134.7 REMARK 620 3 ASP A 260 OD2 81.0 54.2 REMARK 620 4 HOH A 561 O 90.3 92.2 85.3 REMARK 620 5 HOH A 616 O 152.3 73.0 126.5 88.9 REMARK 620 6 HOH A 651 O 76.0 147.7 156.7 98.3 76.8 REMARK 620 7 HOH A 695 O 87.1 83.0 84.9 170.2 97.8 90.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 175 O REMARK 620 2 VAL A 177 O 89.2 REMARK 620 3 ASP A 200 OD1 148.9 114.3 REMARK 620 4 ASP A 200 OD2 158.9 80.2 51.4 REMARK 620 5 HOH A 438 O 93.7 148.4 77.1 86.2 REMARK 620 6 HOH A 502 O 80.4 76.0 123.5 79.3 73.5 REMARK 620 7 HOH A 625 O 91.9 73.9 76.5 102.4 137.3 149.0 REMARK 620 8 HOH A 642 O 75.8 138.6 73.1 123.8 72.1 136.3 68.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN A 307 DBREF 5WHW A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 5WHW ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET CA A 301 1 HET CA A 302 1 HET NO3 A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET BCN A 307 11 HETNAM CA CALCIUM ION HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM BCN BICINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 2(CA 2+) FORMUL 4 NO3 N O3 1- FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 BCN C6 H13 N O4 FORMUL 9 HOH *427(H2 O) HELIX 1 AA1 PRO A 7 ILE A 13 1 7 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 ALA A 256 1 10 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O GLY A 92 N VAL A 56 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 37 O PHE A 91 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O SER A 130 N TYR A 36 SHEET 5 AA2 7 VAL A 153 ALA A 158 1 O ALA A 156 N LEU A 131 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 155 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.03 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.06 LINK O THR A 16 CA CA A 302 1555 1555 2.36 LINK O PRO A 175 CA CA A 301 1555 1555 2.37 LINK O VAL A 177 CA CA A 301 1555 1555 2.43 LINK OD1 ASP A 200 CA CA A 301 1555 1555 2.66 LINK OD2 ASP A 200 CA CA A 301 1555 1555 2.44 LINK OD1 ASP A 260 CA CA A 302 1555 1555 2.52 LINK OD2 ASP A 260 CA CA A 302 1555 1555 2.49 LINK CA CA A 301 O HOH A 438 1555 1555 2.45 LINK CA CA A 301 O HOH A 502 1555 1555 2.45 LINK CA CA A 301 O HOH A 625 1555 1555 2.52 LINK CA CA A 301 O HOH A 642 1555 1555 2.57 LINK CA CA A 302 O HOH A 561 1555 1555 2.41 LINK CA CA A 302 O HOH A 616 1555 1555 2.45 LINK CA CA A 302 O HOH A 651 1555 1555 2.58 LINK CA CA A 302 O HOH A 695 1555 1555 2.46 CISPEP 1 SER A 170 PRO A 171 0 0.48 SITE 1 AC1 7 PRO A 175 VAL A 177 ASP A 200 HOH A 438 SITE 2 AC1 7 HOH A 502 HOH A 625 HOH A 642 SITE 1 AC2 6 THR A 16 ASP A 260 HOH A 561 HOH A 616 SITE 2 AC2 6 HOH A 651 HOH A 695 SITE 1 AC3 8 TYR A 60 TYR A 61 ARG A 80 LYS A 94 SITE 2 AC3 8 ASP A 97 ASP A 98 HOH A 566 HOH A 623 SITE 1 AC4 3 SER A 116 ASP A 117 HOH A 550 SITE 1 AC5 7 TYR A 24 ASN A 120 ARG A 121 ASN A 122 SITE 2 AC5 7 TYR A 277 GLN A 278 ALA A 279 SITE 1 AC6 9 THR A 16 GLY A 32 SER A 33 CYS A 34 SITE 2 AC6 9 GLN A 89 ASN A 122 PRO A 124 HOH A 407 SITE 3 AC6 9 HOH A 503 SITE 1 AC7 10 HIS A 69 ASN A 161 ILE A 220 SER A 221 SITE 2 AC7 10 GLY A 222 SER A 224 HOH A 475 HOH A 539 SITE 3 AC7 10 HOH A 541 HOH A 573 CRYST1 67.719 67.719 107.323 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009318 0.00000