HEADER HYDROLASE 18-JUL-17 5WI7 TITLE STRUCTURE OF ACINETOBACTER BAUMANNII CARBAPENEMASE OXA-239 K82D BOUND TITLE 2 TO DORIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXA-239; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. ENRICHMENT CULTURE CLONE SOURCE 3 8407; SOURCE 4 ORGANISM_TAXID: 1182652; SOURCE 5 VARIANT: K82D; SOURCE 6 GENE: OXA-239; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS BETA-LACTAMASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.HARPER,C.M.JUNE,R.A.POWERS,D.A.LEONARD REVDAT 4 04-OCT-23 5WI7 1 REMARK REVDAT 3 11-DEC-19 5WI7 1 REMARK REVDAT 2 24-JAN-18 5WI7 1 JRNL REVDAT 1 27-DEC-17 5WI7 0 JRNL AUTH T.M.HARPER,C.M.JUNE,M.A.TARACILA,R.A.BONOMO,R.A.POWERS, JRNL AUTH 2 D.A.LEONARD JRNL TITL MULTIPLE SUBSTITUTIONS LEAD TO INCREASED LOOP FLEXIBILITY JRNL TITL 2 AND EXPANDED SPECIFICITY IN ACINETOBACTER BAUMANNII JRNL TITL 3 CARBAPENEMASE OXA-239. JRNL REF BIOCHEM. J. V. 475 273 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29229762 JRNL DOI 10.1042/BCJ20170702 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3919 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3780 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5329 ; 1.347 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8660 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 5.278 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.071 ;25.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;12.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4483 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 897 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1923 ; 1.521 ; 2.071 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1924 ; 1.520 ; 2.072 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2405 ; 2.499 ; 3.095 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2406 ; 2.498 ; 3.095 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 1.805 ; 2.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1997 ; 1.806 ; 2.295 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2919 ; 2.959 ; 3.377 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4576 ; 6.041 ;17.404 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4577 ; 6.047 ;17.418 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 36 273 B 36 273 14464 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9440 37.7040 -0.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0860 REMARK 3 T33: 0.0238 T12: -0.0221 REMARK 3 T13: 0.0379 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.6879 L22: 1.9209 REMARK 3 L33: 2.0239 L12: -0.2747 REMARK 3 L13: 0.8504 L23: 0.5243 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0502 S13: -0.0390 REMARK 3 S21: -0.3851 S22: 0.0414 S23: -0.1329 REMARK 3 S31: -0.1061 S32: 0.2566 S33: -0.0577 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1420 69.0530 11.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1196 REMARK 3 T33: 0.0566 T12: 0.0455 REMARK 3 T13: -0.0573 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7767 L22: 6.7726 REMARK 3 L33: 1.2504 L12: -0.9514 REMARK 3 L13: 0.1650 L23: 0.2163 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.1270 S13: 0.1075 REMARK 3 S21: -0.0745 S22: -0.1193 S23: 0.1650 REMARK 3 S31: -0.2022 S32: 0.0072 S33: 0.1892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.861 REMARK 200 RESOLUTION RANGE LOW (A) : 81.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4K0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAH2PO4, 100 MM CITRIC ACID, REMARK 280 200 MM NACL, 20% PEG 8000, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.50850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.50850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 MET B 21 REMARK 465 HIS B 22 REMARK 465 ASN B 23 REMARK 465 LEU B 24 REMARK 465 ILE B 25 REMARK 465 ASN B 26 REMARK 465 GLU B 27 REMARK 465 THR B 28 REMARK 465 PRO B 29 REMARK 465 SER B 30 REMARK 465 GLN B 31 REMARK 465 ILE B 32 REMARK 465 VAL B 33 REMARK 465 GLN B 34 REMARK 465 GLY B 35 REMARK 465 TRP B 103 REMARK 465 LYS B 104 REMARK 465 GLY B 105 REMARK 465 GLU B 106 REMARK 465 LYS B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 SER A 225 OG REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 268 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -126.83 58.19 REMARK 500 ALA A 78 -137.74 50.06 REMARK 500 ASN A 163 14.35 -151.44 REMARK 500 ASN A 222 50.00 -105.86 REMARK 500 ASP B 58 -125.62 57.48 REMARK 500 ALA B 78 -139.20 49.64 REMARK 500 GLU B 114 47.55 -84.91 REMARK 500 ASN B 163 13.89 -149.98 REMARK 500 ASN B 222 48.16 -103.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4J6 A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4J6 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4J6 B 301 and SER B REMARK 800 79 DBREF 5WI7 A 22 273 UNP I6YCI1 I6YCI1_9GAMM 22 273 DBREF 5WI7 B 22 273 UNP I6YCI1 I6YCI1_9GAMM 22 273 SEQADV 5WI7 MET A 21 UNP I6YCI1 EXPRESSION TAG SEQADV 5WI7 ASP A 82 UNP I6YCI1 LYS 82 ENGINEERED MUTATION SEQADV 5WI7 MET B 21 UNP I6YCI1 EXPRESSION TAG SEQADV 5WI7 ASP B 82 UNP I6YCI1 LYS 82 ENGINEERED MUTATION SEQRES 1 A 253 MET HIS ASN LEU ILE ASN GLU THR PRO SER GLN ILE VAL SEQRES 2 A 253 GLN GLY HIS ASN GLN VAL ILE HIS GLN TYR PHE ASP GLU SEQRES 3 A 253 LYS ASN THR SER GLY VAL LEU VAL ILE GLN THR ASP LYS SEQRES 4 A 253 LYS ILE ASN LEU TYR GLY ASN ALA LEU SER ARG ALA ASN SEQRES 5 A 253 THR GLU TYR VAL PRO ALA SER THR PHE ASP MET LEU ASN SEQRES 6 A 253 ALA LEU ILE GLY LEU GLU ASN GLN LYS THR ASP ILE ASN SEQRES 7 A 253 GLU ILE PHE LYS TRP LYS GLY GLU LYS ARG LEU PHE THR SEQRES 8 A 253 ALA TRP GLU LYS ASP MET THR LEU GLY GLU ALA MET LYS SEQRES 9 A 253 LEU SER ALA VAL PRO VAL TYR GLN GLU LEU ALA ARG ARG SEQRES 10 A 253 ILE GLY LEU ASP LEU MET GLN LYS GLU VAL LYS ARG ILE SEQRES 11 A 253 GLY PHE GLY ASN ALA GLU ILE GLY GLN GLN VAL ASP ASN SEQRES 12 A 253 PHE TRP LEU VAL GLY PRO LEU LYS VAL THR PRO ILE GLN SEQRES 13 A 253 GLU VAL GLU PHE VAL SER GLN LEU ALA HIS THR GLN LEU SEQRES 14 A 253 PRO PHE SER GLU LYS VAL GLN ALA ASN VAL LYS ASN MET SEQRES 15 A 253 LEU LEU LEU GLU GLU SER ASN GLY TYR LYS ILE PHE GLY SEQRES 16 A 253 LYS THR GLY TRP ALA MET ASN ILE LYS SER GLN VAL GLY SEQRES 17 A 253 TRP LEU THR GLY TRP VAL GLU GLN PRO ASP GLY LYS ILE SEQRES 18 A 253 VAL ALA PHE ALA LEU ASN MET GLU MET ARG SER GLU MET SEQRES 19 A 253 PRO ALA SER ILE ARG ASN GLU LEU LEU MET LYS SER LEU SEQRES 20 A 253 LYS GLN LEU ASN ILE ILE SEQRES 1 B 253 MET HIS ASN LEU ILE ASN GLU THR PRO SER GLN ILE VAL SEQRES 2 B 253 GLN GLY HIS ASN GLN VAL ILE HIS GLN TYR PHE ASP GLU SEQRES 3 B 253 LYS ASN THR SER GLY VAL LEU VAL ILE GLN THR ASP LYS SEQRES 4 B 253 LYS ILE ASN LEU TYR GLY ASN ALA LEU SER ARG ALA ASN SEQRES 5 B 253 THR GLU TYR VAL PRO ALA SER THR PHE ASP MET LEU ASN SEQRES 6 B 253 ALA LEU ILE GLY LEU GLU ASN GLN LYS THR ASP ILE ASN SEQRES 7 B 253 GLU ILE PHE LYS TRP LYS GLY GLU LYS ARG LEU PHE THR SEQRES 8 B 253 ALA TRP GLU LYS ASP MET THR LEU GLY GLU ALA MET LYS SEQRES 9 B 253 LEU SER ALA VAL PRO VAL TYR GLN GLU LEU ALA ARG ARG SEQRES 10 B 253 ILE GLY LEU ASP LEU MET GLN LYS GLU VAL LYS ARG ILE SEQRES 11 B 253 GLY PHE GLY ASN ALA GLU ILE GLY GLN GLN VAL ASP ASN SEQRES 12 B 253 PHE TRP LEU VAL GLY PRO LEU LYS VAL THR PRO ILE GLN SEQRES 13 B 253 GLU VAL GLU PHE VAL SER GLN LEU ALA HIS THR GLN LEU SEQRES 14 B 253 PRO PHE SER GLU LYS VAL GLN ALA ASN VAL LYS ASN MET SEQRES 15 B 253 LEU LEU LEU GLU GLU SER ASN GLY TYR LYS ILE PHE GLY SEQRES 16 B 253 LYS THR GLY TRP ALA MET ASN ILE LYS SER GLN VAL GLY SEQRES 17 B 253 TRP LEU THR GLY TRP VAL GLU GLN PRO ASP GLY LYS ILE SEQRES 18 B 253 VAL ALA PHE ALA LEU ASN MET GLU MET ARG SER GLU MET SEQRES 19 B 253 PRO ALA SER ILE ARG ASN GLU LEU LEU MET LYS SER LEU SEQRES 20 B 253 LYS GLN LEU ASN ILE ILE HET 4J6 A 301 21 HET 4J6 B 301 27 HETNAM 4J6 (4R,5S)-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4-METHYL- HETNAM 2 4J6 3-({(3S,5S)-5-[(SULFAMOYLAMINO)METHYL]PYRROLIDIN-3- HETNAM 3 4J6 YL}SULFANYL)-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID HETSYN 4J6 DORIPENEM(OPEN FORM, PYRROLINE TAUTOMER FORM 1, SP2 HETSYN 2 4J6 CONNECTION TO THIO) FORMUL 3 4J6 2(C15 H26 N4 O6 S2) FORMUL 5 HOH *273(H2 O) HELIX 1 AA1 ASN A 37 LYS A 47 1 11 HELIX 2 AA2 ALA A 67 THR A 73 5 7 HELIX 3 AA3 PRO A 77 THR A 80 5 4 HELIX 4 AA4 PHE A 81 ASN A 92 1 12 HELIX 5 AA5 PHE A 110 GLU A 114 5 5 HELIX 6 AA6 THR A 118 SER A 126 1 9 HELIX 7 AA7 ALA A 127 GLY A 139 1 13 HELIX 8 AA8 GLY A 139 GLY A 151 1 13 HELIX 9 AA9 ASN A 163 GLY A 168 1 6 HELIX 10 AB1 THR A 173 HIS A 186 1 14 HELIX 11 AB2 SER A 192 ASN A 201 1 10 HELIX 12 AB3 SER A 257 LEU A 270 1 14 HELIX 13 AB4 ASN B 37 LYS B 47 1 11 HELIX 14 AB5 ALA B 67 THR B 73 5 7 HELIX 15 AB6 PRO B 77 THR B 80 5 4 HELIX 16 AB7 PHE B 81 ASN B 92 1 12 HELIX 17 AB8 PHE B 110 GLU B 114 5 5 HELIX 18 AB9 LEU B 119 SER B 126 1 8 HELIX 19 AC1 ALA B 127 GLY B 139 1 13 HELIX 20 AC2 GLY B 139 GLY B 151 1 13 HELIX 21 AC3 THR B 173 HIS B 186 1 14 HELIX 22 AC4 SER B 192 ASN B 201 1 10 HELIX 23 AC5 SER B 257 LEU B 270 1 14 SHEET 1 AA1 7 ILE A 32 GLN A 34 0 SHEET 2 AA1 7 LYS A 60 GLY A 65 1 O ILE A 61 N VAL A 33 SHEET 3 AA1 7 GLY A 51 THR A 57 -1 N LEU A 53 O TYR A 64 SHEET 4 AA1 7 ILE A 241 GLU A 249 -1 O ASN A 247 N VAL A 52 SHEET 5 AA1 7 VAL A 227 GLU A 235 -1 N LEU A 230 O LEU A 246 SHEET 6 AA1 7 TYR A 211 ALA A 220 -1 N PHE A 214 O TRP A 233 SHEET 7 AA1 7 LEU A 204 SER A 208 -1 N LEU A 205 O ILE A 213 SHEET 1 AA2 6 LYS B 60 GLY B 65 0 SHEET 2 AA2 6 GLY B 51 THR B 57 -1 N LEU B 53 O TYR B 64 SHEET 3 AA2 6 ILE B 241 GLU B 249 -1 O ALA B 243 N GLN B 56 SHEET 4 AA2 6 VAL B 227 GLU B 235 -1 N LEU B 230 O LEU B 246 SHEET 5 AA2 6 TYR B 211 ALA B 220 -1 N PHE B 214 O TRP B 233 SHEET 6 AA2 6 LEU B 204 SER B 208 -1 N LEU B 205 O ILE B 213 SHEET 1 AA3 2 ILE B 100 PHE B 101 0 SHEET 2 AA3 2 MET B 117 THR B 118 -1 O MET B 117 N PHE B 101 LINK OG SER A 79 CAJ 4J6 A 301 1555 1555 1.41 LINK OG SER B 79 CAJ 4J6 B 301 1555 1555 1.42 CISPEP 1 GLY A 168 PRO A 169 0 5.82 CISPEP 2 GLY B 168 PRO B 169 0 5.28 SITE 1 AC1 13 ALA A 78 SER A 79 PHE A 110 TRP A 113 SITE 2 AC1 13 VAL A 128 LEU A 166 THR A 217 GLY A 218 SITE 3 AC1 13 TRP A 219 ARG A 259 HOH A 424 HOH A 428 SITE 4 AC1 13 HOH A 506 SITE 1 AC2 17 PRO B 77 ALA B 78 THR B 80 PHE B 81 SITE 2 AC2 17 ASP B 82 PHE B 110 TRP B 113 SER B 126 SITE 3 AC2 17 LEU B 166 LYS B 216 THR B 217 GLY B 218 SITE 4 AC2 17 TRP B 219 PRO B 255 ALA B 256 ARG B 259 SITE 5 AC2 17 HOH B 401 CRYST1 99.017 143.895 44.563 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022440 0.00000