HEADER FLAVOPROTEIN 19-JUL-17 5WID TITLE STRUCTURE OF A FLAVODOXIN FROM THE DOMAIN ARCHAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS C2A; SOURCE 3 ORGANISM_TAXID: 188937; SOURCE 4 STRAIN: ATCC 35395 / DSM 2834 / JCM 12185 / C2A; SOURCE 5 GENE: MA_1799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVODOXIN, METHANOSARCINA ACETIVORANS, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.S.MURAKAMI,J.G.FERRY REVDAT 5 04-OCT-23 5WID 1 REMARK REVDAT 4 19-FEB-20 5WID 1 JRNL REVDAT 3 04-DEC-19 5WID 1 REMARK REVDAT 2 20-FEB-19 5WID 1 REMARK REVDAT 1 08-AUG-18 5WID 0 JRNL AUTH D.PRAKASH,P.R.IYER,S.SUHARTI,K.A.WALTERS, JRNL AUTH 2 M.G.SANTIAGO-MARTINEZ,J.H.GOLBECK,K.S.MURAKAMI,J.G.FERRY JRNL TITL STRUCTURE AND FUNCTION OF AN UNUSUAL FLAVODOXIN FROM THE JRNL TITL 2 DOMAINARCHAEA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 25917 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31801875 JRNL DOI 10.1073/PNAS.1908578116 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 73343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0907 - 4.9701 0.95 2868 150 0.1684 0.1662 REMARK 3 2 4.9701 - 3.9488 0.98 2780 149 0.1316 0.1614 REMARK 3 3 3.9488 - 3.4508 0.99 2756 148 0.1346 0.1408 REMARK 3 4 3.4508 - 3.1358 0.99 2745 155 0.1385 0.1546 REMARK 3 5 3.1358 - 2.9113 0.99 2740 139 0.1596 0.1511 REMARK 3 6 2.9113 - 2.7399 1.00 2729 137 0.1535 0.1598 REMARK 3 7 2.7399 - 2.6028 1.00 2746 134 0.1470 0.1543 REMARK 3 8 2.6028 - 2.4895 0.99 2703 129 0.1505 0.1701 REMARK 3 9 2.4895 - 2.3938 0.99 2711 130 0.1535 0.1862 REMARK 3 10 2.3938 - 2.3112 1.00 2688 166 0.1495 0.1749 REMARK 3 11 2.3112 - 2.2390 0.99 2669 151 0.1475 0.1673 REMARK 3 12 2.2390 - 2.1750 0.99 2660 152 0.1487 0.1528 REMARK 3 13 2.1750 - 2.1178 0.99 2686 141 0.1467 0.1593 REMARK 3 14 2.1178 - 2.0661 0.99 2669 153 0.1554 0.1849 REMARK 3 15 2.0661 - 2.0192 0.99 2670 142 0.1649 0.2061 REMARK 3 16 2.0192 - 1.9762 0.99 2659 146 0.1672 0.1780 REMARK 3 17 1.9762 - 1.9367 0.99 2660 143 0.1679 0.1724 REMARK 3 18 1.9367 - 1.9002 0.99 2652 136 0.1742 0.1934 REMARK 3 19 1.9002 - 1.8662 0.98 2620 150 0.1805 0.2330 REMARK 3 20 1.8662 - 1.8346 0.99 2656 150 0.1830 0.1944 REMARK 3 21 1.8346 - 1.8050 0.98 2622 155 0.2037 0.2236 REMARK 3 22 1.8050 - 1.7772 0.98 2632 132 0.2136 0.2271 REMARK 3 23 1.7772 - 1.7511 0.98 2642 133 0.2274 0.2778 REMARK 3 24 1.7511 - 1.7265 0.97 2564 133 0.2416 0.2469 REMARK 3 25 1.7265 - 1.7031 0.96 2605 119 0.2580 0.3090 REMARK 3 26 1.7031 - 1.6810 0.94 2507 131 0.2864 0.3152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3497 REMARK 3 ANGLE : 0.888 4719 REMARK 3 CHIRALITY : 0.057 528 REMARK 3 PLANARITY : 0.005 580 REMARK 3 DIHEDRAL : 5.063 2669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 30.0019 25.2691 -1.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0932 REMARK 3 T33: 0.1015 T12: -0.0033 REMARK 3 T13: 0.0099 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.5165 L22: 0.6705 REMARK 3 L33: 1.3537 L12: -0.3208 REMARK 3 L13: -0.0243 L23: -0.1830 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.0847 S13: -0.0192 REMARK 3 S21: 0.0469 S22: 0.0145 S23: -0.0224 REMARK 3 S31: 0.0375 S32: -0.0639 S33: 0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 6.2027 26.7352 -7.4966 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2831 REMARK 3 T33: 0.2195 T12: -0.0188 REMARK 3 T13: 0.0341 T23: -0.0894 REMARK 3 L TENSOR REMARK 3 L11: 1.5015 L22: 0.9548 REMARK 3 L33: 1.0458 L12: -1.0223 REMARK 3 L13: -0.3849 L23: 0.4866 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.2795 S13: -0.3260 REMARK 3 S21: 0.0277 S22: -0.2109 S23: 0.4369 REMARK 3 S31: 0.0836 S32: -0.4837 S33: -0.1786 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 5.4894 60.3576 4.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.1369 REMARK 3 T33: 0.1936 T12: 0.0121 REMARK 3 T13: 0.0719 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.0971 L22: 1.6307 REMARK 3 L33: 1.0881 L12: -0.9174 REMARK 3 L13: -0.5781 L23: 1.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.1488 S12: 0.1221 S13: 0.1627 REMARK 3 S21: -0.2995 S22: -0.1194 S23: -0.3097 REMARK 3 S31: -0.1488 S32: 0.0607 S33: 0.0090 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91810 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 6.5), 0.2 M REMARK 280 AMMONIUM ACETATE AND 20-26 % (W/V) 2-METHYL-2,4-PENTANEDIOL (MPD) REMARK 280 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.90800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.81600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.86200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 144.77000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.95400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.90800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 115.81600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 144.77000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 86.86200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.95400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 382 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 352 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 369 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 394 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 453 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 145 REMARK 465 THR A 146 REMARK 465 LYS A 147 REMARK 465 ALA A 148 REMARK 465 GLU A 149 REMARK 465 LYS B 144 REMARK 465 GLY B 145 REMARK 465 THR B 146 REMARK 465 LYS B 147 REMARK 465 ALA B 148 REMARK 465 GLU B 149 REMARK 465 GLY C 145 REMARK 465 THR C 146 REMARK 465 LYS C 147 REMARK 465 ALA C 148 REMARK 465 GLU C 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 322 O HOH C 409 1.71 REMARK 500 O HOH A 315 O HOH A 404 1.80 REMARK 500 O HOH C 317 O HOH C 339 1.85 REMARK 500 O HOH A 344 O HOH A 430 1.90 REMARK 500 O HOH C 354 O HOH C 427 1.93 REMARK 500 O HOH C 406 O HOH C 428 1.94 REMARK 500 O HOH A 440 O HOH B 391 1.95 REMARK 500 NZ LYS C 144 O HOH C 301 1.97 REMARK 500 O HOH B 376 O HOH B 429 1.97 REMARK 500 O HOH B 315 O HOH B 316 1.99 REMARK 500 O HOH C 323 O HOH C 384 2.10 REMARK 500 OD2 ASP C 39 O HOH C 302 2.16 REMARK 500 OE2 GLU B 72 O HOH B 301 2.18 REMARK 500 O HOH C 431 O HOH C 441 2.19 REMARK 500 O HOH A 391 O HOH B 411 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 441 O HOH C 420 8665 1.49 REMARK 500 OH TYR A 60 OD2 ASP B 71 5554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 -64.07 -104.20 REMARK 500 TRP A 92 -38.79 -160.79 REMARK 500 HIS A 120 -141.91 57.12 REMARK 500 GLU B 47 -37.27 84.01 REMARK 500 GLU B 72 -65.93 -105.67 REMARK 500 ASN B 78 74.78 53.80 REMARK 500 TRP B 92 -31.11 -159.49 REMARK 500 HIS B 120 -147.13 61.52 REMARK 500 TRP C 92 -29.12 -156.82 REMARK 500 HIS C 120 -146.30 60.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 439 DISTANCE = 5.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 201 DBREF 5WID A 1 149 UNP Q8TPV5 Q8TPV5_METAC 1 149 DBREF 5WID B 1 149 UNP Q8TPV5 Q8TPV5_METAC 1 149 DBREF 5WID C 1 149 UNP Q8TPV5 Q8TPV5_METAC 1 149 SEQRES 1 A 149 MET LYS ALA ILE VAL VAL TYR LEU SER THR SER GLY ASN SEQRES 2 A 149 THR LYS ALA MET ALA GLU ALA ILE GLY ASN GLY ILE GLU SEQRES 3 A 149 SER LYS ASN VAL ASP VAL GLN VAL ILE SER PHE TYR ASP SEQRES 4 A 149 VAL LYS LEU ASP GLU LEU LYS GLU ALA GLU ALA ILE ALA SEQRES 5 A 149 VAL GLY SER SER THR PHE TYR TYR LYS MET LEU LEU PRO SEQRES 6 A 149 MET GLU LYS PHE MET ASP GLU THR LEU VAL ALA SER ASN SEQRES 7 A 149 PRO GLN GLY LYS ILE GLY ALA ALA PHE GLY SER TYR GLY SEQRES 8 A 149 TRP SER GLY GLU ALA PRO ILE LEU ILE ALA GLU LYS MET SEQRES 9 A 149 ARG GLU MET GLY MET THR VAL MET ASP PRO VAL LEU ARG SEQRES 10 A 149 ILE LEU HIS LYS PRO THR ASP LYS ASP LEU GLN GLU CYS SEQRES 11 A 149 LYS ARG LEU GLY ILE ASP ILE ALA GLU LYS VAL LYS HIS SEQRES 12 A 149 LYS GLY THR LYS ALA GLU SEQRES 1 B 149 MET LYS ALA ILE VAL VAL TYR LEU SER THR SER GLY ASN SEQRES 2 B 149 THR LYS ALA MET ALA GLU ALA ILE GLY ASN GLY ILE GLU SEQRES 3 B 149 SER LYS ASN VAL ASP VAL GLN VAL ILE SER PHE TYR ASP SEQRES 4 B 149 VAL LYS LEU ASP GLU LEU LYS GLU ALA GLU ALA ILE ALA SEQRES 5 B 149 VAL GLY SER SER THR PHE TYR TYR LYS MET LEU LEU PRO SEQRES 6 B 149 MET GLU LYS PHE MET ASP GLU THR LEU VAL ALA SER ASN SEQRES 7 B 149 PRO GLN GLY LYS ILE GLY ALA ALA PHE GLY SER TYR GLY SEQRES 8 B 149 TRP SER GLY GLU ALA PRO ILE LEU ILE ALA GLU LYS MET SEQRES 9 B 149 ARG GLU MET GLY MET THR VAL MET ASP PRO VAL LEU ARG SEQRES 10 B 149 ILE LEU HIS LYS PRO THR ASP LYS ASP LEU GLN GLU CYS SEQRES 11 B 149 LYS ARG LEU GLY ILE ASP ILE ALA GLU LYS VAL LYS HIS SEQRES 12 B 149 LYS GLY THR LYS ALA GLU SEQRES 1 C 149 MET LYS ALA ILE VAL VAL TYR LEU SER THR SER GLY ASN SEQRES 2 C 149 THR LYS ALA MET ALA GLU ALA ILE GLY ASN GLY ILE GLU SEQRES 3 C 149 SER LYS ASN VAL ASP VAL GLN VAL ILE SER PHE TYR ASP SEQRES 4 C 149 VAL LYS LEU ASP GLU LEU LYS GLU ALA GLU ALA ILE ALA SEQRES 5 C 149 VAL GLY SER SER THR PHE TYR TYR LYS MET LEU LEU PRO SEQRES 6 C 149 MET GLU LYS PHE MET ASP GLU THR LEU VAL ALA SER ASN SEQRES 7 C 149 PRO GLN GLY LYS ILE GLY ALA ALA PHE GLY SER TYR GLY SEQRES 8 C 149 TRP SER GLY GLU ALA PRO ILE LEU ILE ALA GLU LYS MET SEQRES 9 C 149 ARG GLU MET GLY MET THR VAL MET ASP PRO VAL LEU ARG SEQRES 10 C 149 ILE LEU HIS LYS PRO THR ASP LYS ASP LEU GLN GLU CYS SEQRES 11 C 149 LYS ARG LEU GLY ILE ASP ILE ALA GLU LYS VAL LYS HIS SEQRES 12 C 149 LYS GLY THR LYS ALA GLU HET FMN A 201 31 HET ACT A 202 4 HET ACT A 203 4 HET FMN B 201 31 HET MRD B 202 8 HET FMN C 201 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ACT ACETATE ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 4 FMN 3(C17 H21 N4 O9 P) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 8 MRD C6 H14 O2 FORMUL 10 HOH *474(H2 O) HELIX 1 AA1 GLY A 12 LYS A 28 1 17 HELIX 2 AA2 LYS A 41 ALA A 48 1 8 HELIX 3 AA3 LEU A 63 GLU A 72 1 10 HELIX 4 AA4 GLU A 72 SER A 77 1 6 HELIX 5 AA5 GLU A 95 MET A 107 1 13 HELIX 6 AA6 THR A 123 LYS A 144 1 22 HELIX 7 AA7 GLY B 12 LYS B 28 1 17 HELIX 8 AA8 TYR B 38 VAL B 40 5 3 HELIX 9 AA9 LYS B 41 LYS B 46 1 6 HELIX 10 AB1 LEU B 63 SER B 77 1 15 HELIX 11 AB2 GLY B 94 MET B 107 1 14 HELIX 12 AB3 THR B 123 HIS B 143 1 21 HELIX 13 AB4 GLY C 12 LYS C 28 1 17 HELIX 14 AB5 LYS C 41 ALA C 48 1 8 HELIX 15 AB6 LEU C 63 GLU C 72 1 10 HELIX 16 AB7 GLU C 72 SER C 77 1 6 HELIX 17 AB8 GLU C 95 MET C 107 1 13 HELIX 18 AB9 THR C 123 LYS C 144 1 22 SHEET 1 AA1 5 ASP A 31 SER A 36 0 SHEET 2 AA1 5 LYS A 2 LEU A 8 1 N VAL A 5 O ILE A 35 SHEET 3 AA1 5 ALA A 50 SER A 55 1 O ALA A 52 N VAL A 6 SHEET 4 AA1 5 ILE A 83 TYR A 90 1 O ALA A 85 N VAL A 53 SHEET 5 AA1 5 THR A 110 VAL A 111 1 O THR A 110 N GLY A 84 SHEET 1 AA2 5 ASP A 31 SER A 36 0 SHEET 2 AA2 5 LYS A 2 LEU A 8 1 N VAL A 5 O ILE A 35 SHEET 3 AA2 5 ALA A 50 SER A 55 1 O ALA A 52 N VAL A 6 SHEET 4 AA2 5 ILE A 83 TYR A 90 1 O ALA A 85 N VAL A 53 SHEET 5 AA2 5 LEU A 116 LEU A 119 1 O LEU A 116 N ALA A 86 SHEET 1 AA3 2 THR A 57 PHE A 58 0 SHEET 2 AA3 2 LYS A 61 MET A 62 -1 O LYS A 61 N PHE A 58 SHEET 1 AA4 5 ASP B 31 SER B 36 0 SHEET 2 AA4 5 LYS B 2 LEU B 8 1 N VAL B 5 O GLN B 33 SHEET 3 AA4 5 ALA B 50 SER B 55 1 O ALA B 52 N VAL B 6 SHEET 4 AA4 5 ILE B 83 TYR B 90 1 O ALA B 85 N VAL B 53 SHEET 5 AA4 5 THR B 110 VAL B 111 1 O THR B 110 N GLY B 84 SHEET 1 AA5 5 ASP B 31 SER B 36 0 SHEET 2 AA5 5 LYS B 2 LEU B 8 1 N VAL B 5 O GLN B 33 SHEET 3 AA5 5 ALA B 50 SER B 55 1 O ALA B 52 N VAL B 6 SHEET 4 AA5 5 ILE B 83 TYR B 90 1 O ALA B 85 N VAL B 53 SHEET 5 AA5 5 LEU B 116 LEU B 119 1 O LEU B 116 N ALA B 86 SHEET 1 AA6 2 THR B 57 PHE B 58 0 SHEET 2 AA6 2 LYS B 61 MET B 62 -1 O LYS B 61 N PHE B 58 SHEET 1 AA7 5 ASP C 31 SER C 36 0 SHEET 2 AA7 5 LYS C 2 LEU C 8 1 N VAL C 5 O GLN C 33 SHEET 3 AA7 5 ALA C 50 SER C 55 1 O ALA C 52 N VAL C 6 SHEET 4 AA7 5 ILE C 83 TYR C 90 1 O ALA C 85 N VAL C 53 SHEET 5 AA7 5 THR C 110 VAL C 111 1 O THR C 110 N GLY C 84 SHEET 1 AA8 5 ASP C 31 SER C 36 0 SHEET 2 AA8 5 LYS C 2 LEU C 8 1 N VAL C 5 O GLN C 33 SHEET 3 AA8 5 ALA C 50 SER C 55 1 O ALA C 52 N VAL C 6 SHEET 4 AA8 5 ILE C 83 TYR C 90 1 O ALA C 85 N VAL C 53 SHEET 5 AA8 5 LEU C 116 LEU C 119 1 O LEU C 116 N ALA C 86 SHEET 1 AA9 2 THR C 57 PHE C 58 0 SHEET 2 AA9 2 LYS C 61 MET C 62 -1 O LYS C 61 N PHE C 58 CISPEP 1 ASP A 113 PRO A 114 0 -0.23 CISPEP 2 ASP B 113 PRO B 114 0 -3.59 CISPEP 3 ASP C 113 PRO C 114 0 -1.10 SITE 1 AC1 20 SER A 9 THR A 10 SER A 11 GLY A 12 SITE 2 AC1 20 ASN A 13 THR A 14 SER A 56 THR A 57 SITE 3 AC1 20 PHE A 58 TYR A 59 TYR A 60 SER A 89 SITE 4 AC1 20 TYR A 90 GLY A 91 TRP A 92 SER A 93 SITE 5 AC1 20 GLY A 94 HOH A 319 HOH A 355 MRD B 202 SITE 1 AC2 2 GLY A 91 HOH A 400 SITE 1 AC3 3 TYR A 7 LYS A 15 HOH A 338 SITE 1 AC4 20 SER B 9 THR B 10 SER B 11 GLY B 12 SITE 2 AC4 20 ASN B 13 THR B 14 SER B 56 THR B 57 SITE 3 AC4 20 PHE B 58 TYR B 59 TYR B 60 SER B 89 SITE 4 AC4 20 TYR B 90 GLY B 91 TRP B 92 SER B 93 SITE 5 AC4 20 GLY B 94 HOH B 326 HOH B 328 TYR C 38 SITE 1 AC5 4 FMN A 201 TYR B 59 HOH B 309 FMN C 201 SITE 1 AC6 22 THR A 10 PHE A 58 MRD B 202 SER C 9 SITE 2 AC6 22 THR C 10 SER C 11 GLY C 12 ASN C 13 SITE 3 AC6 22 THR C 14 SER C 56 THR C 57 PHE C 58 SITE 4 AC6 22 TYR C 59 TYR C 60 SER C 89 TYR C 90 SITE 5 AC6 22 GLY C 91 TRP C 92 SER C 93 GLY C 94 SITE 6 AC6 22 HOH C 322 HOH C 357 CRYST1 112.773 112.773 173.724 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008867 0.005120 0.000000 0.00000 SCALE2 0.000000 0.010239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005756 0.00000