HEADER GENE REGULATION/DNA 24-JUL-17 5WJQ TITLE MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (28-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (28-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ZINC FINGER PROTEIN 568; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: ZNF568, CHATO, ZFP568; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS C2H2 TYPE ZINC FINGERS, DNA BINDING, TRANSFERASE-DNA COMPLEX, GENE KEYWDS 2 REGULATION, GENE REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PATEL,X.CHENG REVDAT 4 04-OCT-23 5WJQ 1 REMARK REVDAT 3 01-JAN-20 5WJQ 1 REMARK REVDAT 2 18-SEP-19 5WJQ 1 JRNL REVDAT 1 07-MAR-18 5WJQ 0 JRNL AUTH A.PATEL,P.YANG,M.TINKHAM,M.PRADHAN,M.A.SUN,Y.WANG,D.HOANG, JRNL AUTH 2 G.WOLF,J.R.HORTON,X.ZHANG,T.MACFARLAN,X.CHENG JRNL TITL DNA CONFORMATION INDUCES ADAPTABLE BINDING BY TANDEM ZINC JRNL TITL 2 FINGER PROTEINS. JRNL REF CELL V. 173 221 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 29551271 JRNL DOI 10.1016/J.CELL.2018.02.058 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8673 - 5.8031 0.99 2627 129 0.1582 0.2039 REMARK 3 2 5.8031 - 4.6098 1.00 2668 141 0.1611 0.2347 REMARK 3 3 4.6098 - 4.0281 1.00 2637 133 0.1634 0.2182 REMARK 3 4 4.0281 - 3.6603 1.00 2652 140 0.1887 0.2498 REMARK 3 5 3.6603 - 3.3982 0.98 2574 138 0.1861 0.3345 REMARK 3 6 3.3982 - 3.1980 0.96 2472 134 0.2254 0.2841 REMARK 3 7 3.1980 - 3.0380 0.98 2652 142 0.2896 0.3670 REMARK 3 8 3.0380 - 2.9058 1.00 2615 140 0.2865 0.3824 REMARK 3 9 2.9058 - 2.7940 1.00 2641 142 0.3073 0.3641 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3497 REMARK 3 ANGLE : 1.039 4946 REMARK 3 CHIRALITY : 0.054 519 REMARK 3 PLANARITY : 0.006 445 REMARK 3 DIHEDRAL : 19.282 1873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 42.3439 4.3969 102.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.4080 REMARK 3 T33: 0.5205 T12: 0.0274 REMARK 3 T13: -0.0179 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 4.8429 L22: 1.4269 REMARK 3 L33: 1.3151 L12: 0.8244 REMARK 3 L13: 1.3831 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.2701 S12: 0.1663 S13: -0.1429 REMARK 3 S21: 0.0757 S22: 0.0426 S23: -0.2334 REMARK 3 S31: 0.0365 S32: 0.1755 S33: 0.1516 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.95600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5V3M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE 16% POLYETHYLENE REMARK 280 GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 90.32050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.61950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 90.32050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.61950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C TRS A 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 383 REMARK 465 PRO D 384 REMARK 465 LEU D 385 REMARK 465 GLY D 667 REMARK 465 ARG D 668 REMARK 465 ARG D 669 REMARK 465 LEU D 670 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 392 CG CD CE NZ REMARK 470 GLN D 394 CD OE1 NE2 REMARK 470 GLU D 395 CG CD OE1 OE2 REMARK 470 LYS D 398 CG CD CE NZ REMARK 470 ASP D 415 CG OD1 OD2 REMARK 470 GLU D 416 CG CD OE1 OE2 REMARK 470 LYS D 417 CG CD CE NZ REMARK 470 LYS D 422 CG CD CE NZ REMARK 470 LYS D 448 CG CD CE NZ REMARK 470 LYS D 504 CG CD CE NZ REMARK 470 LYS D 510 CG CD CE NZ REMARK 470 LYS D 560 CG CD CE NZ REMARK 470 LYS D 562 CG CD CE NZ REMARK 470 LYS D 566 CG CD CE NZ REMARK 470 LYS D 588 CG CD CE NZ REMARK 470 LYS D 590 CG CD CE NZ REMARK 470 GLU D 606 CG CD OE1 OE2 REMARK 470 GLU D 612 O CG CD OE1 OE2 REMARK 470 GLU D 616 CG CD OE1 OE2 REMARK 470 LYS D 622 CD CE NZ REMARK 470 GLU D 640 CG CD OE1 OE2 REMARK 470 LYS D 641 CG CD CE NZ REMARK 470 TYR D 643 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 644 CG CD CE NZ REMARK 470 GLN D 646 CG CD OE1 NE2 REMARK 470 GLN D 647 CG CD OE1 NE2 REMARK 470 LYS D 650 CG CD CE NZ REMARK 470 ILE D 653 CG1 CG2 CD1 REMARK 470 THR D 659 OG1 CG2 REMARK 470 GLN D 662 CG CD OE1 NE2 REMARK 470 ARG D 663 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 664 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS D 477 N TRS D 711 2.17 REMARK 500 OP1 DC A 14 NH1 ARG D 541 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 10 O3' DG A 10 C3' -0.040 REMARK 500 DA A 21 O3' DA A 21 C3' -0.048 REMARK 500 DC A 27 O3' DC A 27 C3' -0.041 REMARK 500 DC B 3 O3' DC B 3 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC B 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS D 410 0.58 -65.67 REMARK 500 LYS D 422 -82.41 -66.22 REMARK 500 THR D 460 -62.83 -27.96 REMARK 500 ASP D 479 -77.98 -109.41 REMARK 500 CYS D 480 -165.79 -74.02 REMARK 500 HIS D 503 99.28 -69.88 REMARK 500 GLN D 647 -7.03 73.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 393 SG REMARK 620 2 CYS D 396 SG 107.9 REMARK 620 3 HIS D 409 NE2 115.3 84.1 REMARK 620 4 HIS D 413 NE2 119.3 120.2 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 421 SG REMARK 620 2 CYS D 424 SG 104.4 REMARK 620 3 HIS D 437 NE2 99.0 96.6 REMARK 620 4 HIS D 441 NE2 106.8 135.0 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 449 SG REMARK 620 2 HIS D 465 NE2 125.7 REMARK 620 3 HIS D 469 NE2 120.0 88.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 477 SG REMARK 620 2 CYS D 480 SG 102.5 REMARK 620 3 HIS D 493 NE2 123.5 96.7 REMARK 620 4 HIS D 497 NE2 96.5 132.2 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 705 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 505 SG REMARK 620 2 CYS D 508 SG 114.9 REMARK 620 3 HIS D 521 NE2 110.5 95.6 REMARK 620 4 HIS D 525 NE2 103.0 134.5 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 706 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 533 SG REMARK 620 2 CYS D 536 SG 91.9 REMARK 620 3 HIS D 549 NE2 134.8 102.5 REMARK 620 4 HIS D 553 NE2 99.0 113.7 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 707 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 561 SG REMARK 620 2 CYS D 564 SG 94.4 REMARK 620 3 HIS D 577 NE2 120.6 100.0 REMARK 620 4 HIS D 581 NE2 110.7 148.3 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 708 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 589 SG REMARK 620 2 HIS D 605 NE2 97.3 REMARK 620 3 HIS D 609 NE2 134.6 98.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 709 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 617 SG REMARK 620 2 CYS D 620 SG 119.3 REMARK 620 3 HIS D 633 NE2 115.6 94.5 REMARK 620 4 HIS D 637 NE2 91.6 127.4 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS D 711 DBREF 5WJQ A 1 28 PDB 5WJQ 5WJQ 1 28 DBREF 5WJQ B 1 28 PDB 5WJQ 5WJQ 1 28 DBREF 5WJQ D 388 668 UNP E9PYI1 ZN568_MOUSE 388 668 SEQADV 5WJQ GLY D 383 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ PRO D 384 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ LEU D 385 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ GLY D 386 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ SER D 387 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ ARG D 669 UNP E9PYI1 EXPRESSION TAG SEQADV 5WJQ LEU D 670 UNP E9PYI1 EXPRESSION TAG SEQRES 1 A 28 DT DG DT DG DG DG DC DG DT DG DG DC DA SEQRES 2 A 28 DC DA DG DG DT DA DA DA DA DA DG DG DG SEQRES 3 A 28 DC DA SEQRES 1 B 28 DT DG DC DC DC DT DT DT DT DT DA DC DC SEQRES 2 B 28 DT DG DT DG DC DC DA DC DG DC DC DC DA SEQRES 3 B 28 DC DA SEQRES 1 D 288 GLY PRO LEU GLY SER GLU LYS PRO TYR LYS CYS GLN GLU SEQRES 2 D 288 CYS GLY LYS ALA PHE PRO SER ASN ALA GLN LEU SER LEU SEQRES 3 D 288 HIS HIS ARG VAL HIS THR ASP GLU LYS CYS PHE GLU CYS SEQRES 4 D 288 LYS GLU CYS GLY LYS ALA PHE MET ARG PRO SER HIS LEU SEQRES 5 D 288 LEU ARG HIS GLN ARG ILE HIS THR GLY GLU LYS PRO HIS SEQRES 6 D 288 LYS CYS LYS GLU CYS GLY LYS ALA PHE ARG TYR ASP THR SEQRES 7 D 288 GLN LEU SER LEU HIS LEU LEU THR HIS ALA GLY ALA ARG SEQRES 8 D 288 ARG PHE GLU CYS LYS ASP CYS ASP LYS VAL TYR SER CYS SEQRES 9 D 288 ALA SER GLN LEU ALA LEU HIS GLN MET SER HIS THR GLY SEQRES 10 D 288 GLU LYS PRO HIS LYS CYS LYS GLU CYS GLY LYS GLY PHE SEQRES 11 D 288 ILE SER ASP SER HIS LEU LEU ARG HIS GLN SER VAL HIS SEQRES 12 D 288 THR GLY GLU THR PRO TYR LYS CYS LYS GLU CYS GLY LYS SEQRES 13 D 288 GLY PHE ARG ARG GLY SER GLU LEU ALA ARG HIS GLN ARG SEQRES 14 D 288 ALA HIS SER GLY ASP LYS PRO TYR LYS CYS LYS GLU CYS SEQRES 15 D 288 GLY LYS SER PHE THR CYS THR THR GLU LEU PHE ARG HIS SEQRES 16 D 288 GLN LYS VAL HIS THR GLY ASP ARG PRO HIS LYS CYS LYS SEQRES 17 D 288 GLU CYS GLY LYS ALA PHE ILE ARG ARG SER GLU LEU THR SEQRES 18 D 288 HIS HIS GLU ARG SER HIS SER GLY GLU LYS PRO TYR GLU SEQRES 19 D 288 CYS LYS GLU CYS GLY LYS THR PHE GLY ARG GLY SER GLU SEQRES 20 D 288 LEU SER ARG HIS GLN LYS ILE HIS THR GLY GLU LYS PRO SEQRES 21 D 288 TYR LYS CYS GLN GLN CYS GLY LYS ALA PHE ILE ARG GLY SEQRES 22 D 288 SER HIS LEU THR GLN HIS GLN ARG ILE HIS THR GLY ARG SEQRES 23 D 288 ARG LEU HET TRS A 101 8 HET TRS A 102 8 HET TRS A 103 8 HET TRS A 104 8 HET ZN D 701 1 HET ZN D 702 1 HET ZN D 703 1 HET ZN D 704 1 HET ZN D 705 1 HET ZN D 706 1 HET ZN D 707 1 HET ZN D 708 1 HET ZN D 709 1 HET ZN D 710 1 HET TRS D 711 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ZN ZINC ION HETSYN TRS TRIS BUFFER FORMUL 4 TRS 5(C4 H12 N O3 1+) FORMUL 8 ZN 10(ZN 2+) FORMUL 19 HOH *31(H2 O) HELIX 1 AA1 SER D 402 HIS D 410 1 9 HELIX 2 AA2 HIS D 410 ASP D 415 1 6 HELIX 3 AA3 ARG D 430 GLY D 443 1 14 HELIX 4 AA4 TYR D 458 LEU D 467 1 10 HELIX 5 AA5 CYS D 486 GLY D 499 1 14 HELIX 6 AA6 SER D 514 GLN D 522 1 9 HELIX 7 AA7 GLN D 522 GLY D 527 1 6 HELIX 8 AA8 ARG D 542 GLY D 555 1 14 HELIX 9 AA9 CYS D 570 GLY D 583 1 14 HELIX 10 AB1 ARG D 598 GLY D 611 1 14 HELIX 11 AB2 ARG D 626 LYS D 635 1 10 HELIX 12 AB3 ARG D 654 ARG D 663 1 10 SHEET 1 AA1 2 TYR D 391 LYS D 392 0 SHEET 2 AA1 2 ALA D 399 PHE D 400 -1 O PHE D 400 N TYR D 391 SHEET 1 AA2 2 PHE D 419 GLU D 420 0 SHEET 2 AA2 2 ALA D 427 PHE D 428 -1 O PHE D 428 N PHE D 419 SHEET 1 AA3 2 PHE D 475 GLU D 476 0 SHEET 2 AA3 2 VAL D 483 TYR D 484 -1 O TYR D 484 N PHE D 475 SHEET 1 AA4 2 HIS D 503 LYS D 504 0 SHEET 2 AA4 2 GLY D 511 PHE D 512 -1 O PHE D 512 N HIS D 503 SHEET 1 AA5 2 TYR D 531 LYS D 532 0 SHEET 2 AA5 2 GLY D 539 PHE D 540 -1 O PHE D 540 N TYR D 531 SHEET 1 AA6 2 TYR D 559 LYS D 560 0 SHEET 2 AA6 2 SER D 567 PHE D 568 -1 O PHE D 568 N TYR D 559 SHEET 1 AA7 2 HIS D 587 LYS D 588 0 SHEET 2 AA7 2 ALA D 595 PHE D 596 -1 O PHE D 596 N HIS D 587 SHEET 1 AA8 2 TYR D 615 GLU D 616 0 SHEET 2 AA8 2 THR D 623 PHE D 624 -1 O PHE D 624 N TYR D 615 SSBOND 1 CYS D 449 CYS D 452 1555 1555 2.94 LINK SG CYS D 393 ZN ZN D 701 1555 1555 2.51 LINK SG CYS D 396 ZN ZN D 701 1555 1555 2.23 LINK NE2 HIS D 409 ZN ZN D 701 1555 1555 2.30 LINK NE2 HIS D 413 ZN ZN D 701 1555 1555 2.05 LINK SG CYS D 421 ZN ZN D 702 1555 1555 2.56 LINK SG CYS D 424 ZN ZN D 702 1555 1555 2.17 LINK NE2 HIS D 437 ZN ZN D 702 1555 1555 2.05 LINK NE2 HIS D 441 ZN ZN D 702 1555 1555 1.96 LINK SG CYS D 449 ZN ZN D 703 1555 1555 2.39 LINK NE2 HIS D 465 ZN ZN D 703 1555 1555 2.33 LINK NE2 HIS D 469 ZN ZN D 703 1555 1555 2.05 LINK SG CYS D 477 ZN ZN D 704 1555 1555 2.44 LINK SG CYS D 480 ZN ZN D 704 1555 1555 2.39 LINK NE2 HIS D 493 ZN ZN D 704 1555 1555 2.60 LINK NE2 HIS D 497 ZN ZN D 704 1555 1555 2.06 LINK SG CYS D 505 ZN ZN D 705 1555 1555 2.10 LINK SG CYS D 508 ZN ZN D 705 1555 1555 2.39 LINK NE2 HIS D 521 ZN ZN D 705 1555 1555 2.12 LINK NE2 HIS D 525 ZN ZN D 705 1555 1555 2.04 LINK SG CYS D 533 ZN ZN D 706 1555 1555 2.33 LINK SG CYS D 536 ZN ZN D 706 1555 1555 2.36 LINK NE2 HIS D 549 ZN ZN D 706 1555 1555 2.62 LINK NE2 HIS D 553 ZN ZN D 706 1555 1555 2.05 LINK SG CYS D 561 ZN ZN D 707 1555 1555 2.39 LINK SG CYS D 564 ZN ZN D 707 1555 1555 2.57 LINK NE2 HIS D 577 ZN ZN D 707 1555 1555 2.32 LINK NE2 HIS D 581 ZN ZN D 707 1555 1555 1.90 LINK SG CYS D 589 ZN ZN D 708 1555 1555 2.35 LINK NE2 HIS D 605 ZN ZN D 708 1555 1555 1.98 LINK NE2 HIS D 609 ZN ZN D 708 1555 1555 2.55 LINK SG CYS D 617 ZN ZN D 709 1555 1555 2.44 LINK SG CYS D 620 ZN ZN D 709 1555 1555 2.11 LINK NE2 HIS D 633 ZN ZN D 709 1555 1555 2.34 LINK NE2 HIS D 637 ZN ZN D 709 1555 1555 1.91 LINK SG CYS D 648 ZN ZN D 710 1555 1555 2.34 SITE 1 AC1 4 DA A 28 DT B 1 DG B 2 DC B 3 SITE 1 AC2 5 DG A 24 DG A 25 DG A 26 DC B 5 SITE 2 AC2 5 DT B 6 SITE 1 AC3 3 DG A 8 DG B 22 DC B 23 SITE 1 AC4 5 DG A 4 DG A 5 DG A 6 DC B 25 SITE 2 AC4 5 DA B 26 SITE 1 AC5 4 CYS D 393 CYS D 396 HIS D 409 HIS D 413 SITE 1 AC6 4 CYS D 421 CYS D 424 HIS D 437 HIS D 441 SITE 1 AC7 4 CYS D 449 CYS D 452 HIS D 465 HIS D 469 SITE 1 AC8 4 CYS D 477 CYS D 480 HIS D 493 HIS D 497 SITE 1 AC9 4 CYS D 505 CYS D 508 HIS D 521 HIS D 525 SITE 1 AD1 4 CYS D 533 CYS D 536 HIS D 549 HIS D 553 SITE 1 AD2 4 CYS D 561 CYS D 564 HIS D 577 HIS D 581 SITE 1 AD3 4 CYS D 589 CYS D 592 HIS D 605 HIS D 609 SITE 1 AD4 4 CYS D 617 CYS D 620 HIS D 633 HIS D 637 SITE 1 AD5 4 CYS D 645 CYS D 648 HIS D 661 HIS D 665 SITE 1 AD6 6 GLU D 476 CYS D 477 ASP D 479 CYS D 480 SITE 2 AD6 6 ASP D 481 LYS D 482 CRYST1 180.641 35.239 81.912 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012208 0.00000