HEADER IMMUNE SYSTEM 25-JUL-17 5WKE TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH PS COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS ANTIGEN PRESENTING MOLECULE, PS, PHOSPHOLIPID, MHC, CD1B, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHINE,S.GRAS,J.ROSSJOHN REVDAT 2 29-JUL-20 5WKE 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 01-NOV-17 5WKE 0 JRNL AUTH A.SHAHINE,I.VAN RHIJN,T.Y.CHENG,S.IWANY,S.GRAS,D.B.MOODY, JRNL AUTH 2 J.ROSSJOHN JRNL TITL A MOLECULAR BASIS OF HUMAN T CELL RECEPTOR AUTOREACTIVITY JRNL TITL 2 TOWARD SELF-PHOSPHOLIPIDS. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 29054999 JRNL DOI 10.1126/SCIIMMUNOL.AAO1384 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3202 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2300 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3046 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 241 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07720 REMARK 3 B22 (A**2) : -0.25420 REMARK 3 B33 (A**2) : -1.82300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.125 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.118 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.116 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3410 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4643 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1564 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 74 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 489 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3410 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 449 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4239 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 109} REMARK 3 ORIGIN FOR THE GROUP (A): 0.2292 13.2420 -8.8565 REMARK 3 T TENSOR REMARK 3 T11: -0.0581 T22: 0.0093 REMARK 3 T33: 0.0048 T12: 0.0044 REMARK 3 T13: -0.0198 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.8931 REMARK 3 L33: 0.4060 L12: -0.0485 REMARK 3 L13: 0.0759 L23: -0.3493 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0154 S13: 0.0025 REMARK 3 S21: 0.0263 S22: -0.0216 S23: -0.0819 REMARK 3 S31: 0.0149 S32: 0.0157 S33: 0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|110 - 175} REMARK 3 ORIGIN FOR THE GROUP (A): -4.7131 24.3329 -5.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: -0.0146 REMARK 3 T33: -0.0103 T12: 0.0137 REMARK 3 T13: -0.0150 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1123 L22: 0.1411 REMARK 3 L33: 0.4679 L12: 0.2219 REMARK 3 L13: 0.0254 L23: 0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0041 S13: 0.0296 REMARK 3 S21: 0.0169 S22: -0.0077 S23: -0.0315 REMARK 3 S31: -0.0225 S32: -0.0010 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|176 - 282} REMARK 3 ORIGIN FOR THE GROUP (A): -31.2063 -2.9884 -14.3170 REMARK 3 T TENSOR REMARK 3 T11: -0.0065 T22: -0.0135 REMARK 3 T33: -0.0008 T12: -0.0245 REMARK 3 T13: 0.0093 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4290 L22: 0.4715 REMARK 3 L33: 0.3465 L12: 0.4358 REMARK 3 L13: -0.2402 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0085 S13: 0.0276 REMARK 3 S21: 0.0083 S22: -0.0110 S23: 0.0391 REMARK 3 S31: 0.0031 S32: -0.0105 S33: 0.0192 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|3 - 98} REMARK 3 ORIGIN FOR THE GROUP (A): -11.7280 -7.8391 -4.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: -0.0516 REMARK 3 T33: -0.0179 T12: -0.0228 REMARK 3 T13: -0.0041 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.8321 L22: 1.2830 REMARK 3 L33: 0.2050 L12: 0.4372 REMARK 3 L13: 0.4158 L23: 0.3442 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0114 S13: -0.0526 REMARK 3 S21: 0.0106 S22: -0.0189 S23: -0.0080 REMARK 3 S31: 0.0362 S32: -0.0124 S33: -0.0003 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9753 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 40.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 3350, 0.2M SODIUM MALONATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.39500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.39500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 283 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 96 CE NZ REMARK 470 MET B 101 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TRP A 23 CE2 CZ2 CZ3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -114.90 56.65 REMARK 500 ASP A 43 -71.41 -62.86 REMARK 500 ASP A 43 -71.41 -61.51 REMARK 500 PHE A 123 -50.35 -122.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.95 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CUY A 401 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 FUC C 2 REMARK 615 NAG C 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 665 O REMARK 620 2 HOH A 707 O 60.7 REMARK 620 3 ARG B 99 O 76.2 101.1 REMARK 620 4 MET B 101 O 151.5 145.6 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 ASN B 23 O 116.7 REMARK 620 3 GLU B 71 OE1 120.3 117.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 73 O REMARK 620 2 ASP B 78 OD2 127.7 REMARK 620 3 TYR B 80 OH 102.9 113.3 REMARK 620 N 1 2 DBREF 5WKE A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 5WKE B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 5WKE GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 5WKE SER A 280 UNP P29016 EXPRESSION TAG SEQADV 5WKE GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 5WKE LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 5WKE ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 5WKE ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 5WKE ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 5WKE PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 5WKE GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 5WKE ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 5WKE GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 5WKE LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 5WKE ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 5WKE GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 5WKE TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 5WKE GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 5WKE HIS A 301 UNP P29016 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET HET NAG C 1 14 HET FUC C 2 10 HET NAG C 3 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET FUC D 6 10 HET FUC D 7 10 HET CUY A 401 35 HET NAG A 402 14 HET EDO A 413 4 HET EDO A 414 4 HET CL A 415 1 HET CL A 416 1 HET CL A 417 1 HET CL A 418 1 HET CL A 419 1 HET P50 A 420 51 HET NA B 201 1 HET NA B 202 1 HET NA B 203 1 HET EDO B 204 4 HET CL B 205 1 HET CL B 206 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CUY TETRACOSYL OCTADECANOATE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM P50 (19S,22S,25R)-25-AMINO-22-HYDROXY-16,22,26-TRIOXO-17, HETNAM 2 P50 21,23-TRIOXA-22LAMBDA~5~-PHOSPHAHEXACOSAN-19-YL (9Z)- HETNAM 3 P50 OCTADEC-9-ENOATE HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 FUC 3(C6 H12 O5) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 5 CUY C42 H84 O2 FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 CL 7(CL 1-) FORMUL 14 P50 C40 H76 N O9 P FORMUL 15 NA 3(NA 1+) FORMUL 21 HOH *331(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 TYR A 151 GLU A 164 1 14 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N ASP A 41 O THR A 46 SHEET 3 AA1 8 ALA A 24 LEU A 32 -1 N GLY A 30 O ILE A 37 SHEET 4 AA1 8 SER A 9 PHE A 18 -1 N THR A 15 O GLN A 27 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O PHE A 94 N PHE A 18 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O LEU A 124 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 GLY A 198 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O GLN A 203 N GLY A 194 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 GLY A 198 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O GLN A 203 N GLY A 194 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O ILE A 273 N VAL A 263 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O SER B 30 N LYS B 8 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O PHE B 64 N PHE B 32 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O SER B 30 N LYS B 8 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O PHE B 64 N PHE B 32 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 ILE B 37 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 HIS B 86 -1 O ARG B 83 N ASP B 40 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.09 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.04 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.02 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 57 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 128 C1 NAG C 1 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O3 NAG D 1 C1 FUC D 6 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 7 1555 1555 1.40 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.41 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.38 LINK O HOH A 665 NA NA B 202 1555 1555 2.65 LINK O HOH A 707 NA NA B 202 1555 1555 2.55 LINK OG SER B 22 NA NA B 203 1555 1555 2.36 LINK O ASN B 23 NA NA B 203 1555 1555 2.84 LINK OE1 GLU B 71 NA NA B 203 1555 1555 3.05 LINK O THR B 73 NA NA B 201 1555 1555 2.51 LINK OD2 ASP B 78 NA NA B 201 1555 1555 2.96 LINK OH TYR B 80 NA NA B 201 1555 1555 2.43 LINK O ARG B 99 NA NA B 202 1555 1555 2.80 LINK O MET B 101 NA NA B 202 1555 1555 2.54 CISPEP 1 TYR A 92 PRO A 93 0 -1.91 CISPEP 2 TYR A 212 PRO A 213 0 0.49 CISPEP 3 HIS B 33 PRO B 34 0 4.67 CRYST1 57.250 78.550 84.790 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011794 0.00000