HEADER IMMUNE SYSTEM 25-JUL-17 5WL1 TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH PG COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS ANTIGEN PRESENTING MOLECULE, PG, PHOSPHOLIPID, MHC, CD1B, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHINE,S.GRAS,J.ROSSJOHN REVDAT 2 29-JUL-20 5WL1 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 01-NOV-17 5WL1 0 JRNL AUTH A.SHAHINE,I.VAN RHIJN,T.Y.CHENG,S.IWANY,S.GRAS,D.B.MOODY, JRNL AUTH 2 J.ROSSJOHN JRNL TITL A MOLECULAR BASIS OF HUMAN T CELL RECEPTOR AUTOREACTIVITY JRNL TITL 2 TOWARD SELF-PHOSPHOLIPIDS. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 29054999 JRNL DOI 10.1126/SCIIMMUNOL.AAO1384 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 87712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 4336 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6318 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2350 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6006 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 312 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 289 REMARK 3 SOLVENT ATOMS : 657 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48130 REMARK 3 B22 (A**2) : -0.90680 REMARK 3 B33 (A**2) : 0.42550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.180 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.068 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.066 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.068 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.061 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6581 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11836 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1860 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 73 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 945 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6581 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 474 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7680 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.69 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 109} REMARK 3 ORIGIN FOR THE GROUP (A): -1.2623 -13.4363 10.0200 REMARK 3 T TENSOR REMARK 3 T11: -0.0410 T22: 0.0129 REMARK 3 T33: -0.0016 T12: -0.0177 REMARK 3 T13: -0.0013 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.1856 L22: 0.5916 REMARK 3 L33: 0.5169 L12: -0.1773 REMARK 3 L13: -0.3089 L23: -0.4525 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0059 S13: 0.0099 REMARK 3 S21: -0.0033 S22: -0.0229 S23: -0.0770 REMARK 3 S31: 0.0185 S32: 0.0034 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|110 - 175} REMARK 3 ORIGIN FOR THE GROUP (A): -6.0759 -24.2327 6.0458 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: 0.0018 REMARK 3 T33: -0.0099 T12: -0.0082 REMARK 3 T13: 0.0034 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2194 L22: 0.0631 REMARK 3 L33: 0.2708 L12: -0.0972 REMARK 3 L13: -0.0891 L23: 0.2673 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0157 S13: -0.0352 REMARK 3 S21: 0.0062 S22: -0.0033 S23: -0.0220 REMARK 3 S31: 0.0160 S32: 0.0016 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|176 - 283} REMARK 3 ORIGIN FOR THE GROUP (A): -32.6259 2.0384 17.4401 REMARK 3 T TENSOR REMARK 3 T11: 0.0023 T22: -0.0047 REMARK 3 T33: -0.0037 T12: 0.0308 REMARK 3 T13: -0.0035 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.6051 L22: 0.2989 REMARK 3 L33: 0.0182 L12: -0.3052 REMARK 3 L13: 0.0845 L23: -0.2600 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0119 S13: -0.0076 REMARK 3 S21: -0.0121 S22: -0.0097 S23: 0.0117 REMARK 3 S31: -0.0213 S32: 0.0060 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|1 - 98} REMARK 3 ORIGIN FOR THE GROUP (A): -14.8638 7.1156 5.7924 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: -0.0090 REMARK 3 T33: -0.0164 T12: 0.0256 REMARK 3 T13: 0.0016 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.4380 L22: 0.4794 REMARK 3 L33: 0.0000 L12: -0.1817 REMARK 3 L13: -0.0995 L23: 0.0832 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0171 S13: 0.0241 REMARK 3 S21: 0.0122 S22: -0.0208 S23: 0.0066 REMARK 3 S31: -0.0383 S32: 0.0033 S33: 0.0157 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9573 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 32.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.2M SODIUM MALONATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.94450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.94450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H32 D3D A 423 O HOH A 501 1.35 REMARK 500 H ARG A 278 O HOH A 502 1.49 REMARK 500 O2 D3D A 423 O HOH A 501 2.15 REMARK 500 C ASN A 283 O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -116.21 53.53 REMARK 500 ASP A 33 -116.43 53.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 992 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B 360 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 361 DISTANCE = 7.03 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CUY A 401 REMARK 610 D3D A 423 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 420 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 259 O REMARK 620 2 TRP A 277 O 89.0 REMARK 620 3 HOH A 507 O 134.7 134.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 52 OG REMARK 620 2 ASP B 53 O 83.3 REMARK 620 3 TYR B 63 O 111.8 115.1 REMARK 620 4 HOH B 328 O 87.0 103.3 138.5 REMARK 620 N 1 2 3 DBREF 5WL1 A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 5WL1 B 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 5WL1 GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 5WL1 SER A 280 UNP P29016 EXPRESSION TAG SEQADV 5WL1 GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 5WL1 LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 5WL1 ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 5WL1 ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 5WL1 ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 5WL1 PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 5WL1 GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 5WL1 ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 5WL1 GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 5WL1 LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 5WL1 ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 5WL1 GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 5WL1 TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 5WL1 GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 5WL1 HIS A 301 UNP P29016 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET HET NAG C 1 25 HET FUC C 2 21 HET NAG C 3 28 HET FUC C 4 21 HET NAG D 1 25 HET NAG D 2 27 HET BMA D 3 20 HET MAN D 4 21 HET FUC D 5 21 HET NAG E 1 25 HET NAG E 2 27 HET BMA E 3 20 HET MAN E 4 21 HET MAN E 5 21 HET FUC E 6 21 HET FUC E 7 21 HET CUY A 401 87 HET IOD A 402 1 HET CL A 419 1 HET NA A 420 1 HET EDO A 421 10 HET EDO A 422 10 HET D3D A 423 120 HET EDO B 101 10 HET NA B 102 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CUY TETRACOSYL OCTADECANOATE HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM D3D (19S,22R,25R)-22,25,26-TRIHYDROXY-16,22-DIOXO-17,21,23- HETNAM 2 D3D TRIOXA-22LAMBDA~5~-PHOSPHAHEXACOSAN-19-YL (9E)- HETNAM 3 D3D OCTADEC-9-ENOATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 FUC 5(C6 H12 O5) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 3(C6 H12 O6) FORMUL 6 CUY C42 H84 O2 FORMUL 7 IOD I 1- FORMUL 8 CL CL 1- FORMUL 9 NA 2(NA 1+) FORMUL 10 EDO 3(C2 H6 O2) FORMUL 12 D3D C40 H77 O10 P FORMUL 15 HOH *657(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 GLY A 153 GLU A 164 1 12 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N ASP A 41 O THR A 46 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N SER A 17 O GLN A 25 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O ILE A 96 N SER A 16 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 SER A 193 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 SER A 193 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.13 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.06 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.02 SSBOND 4 CYS B 25 CYS B 80 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 57 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 128 C1 NAG D 1 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 4 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O6 NAG D 1 C1 FUC D 5 1555 1555 1.41 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.42 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK O3 NAG E 1 C1 FUC E 6 1555 1555 1.43 LINK O6 NAG E 1 C1 FUC E 7 1555 1555 1.38 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.41 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.41 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.39 LINK O LEU A 259 NA NA A 420 1555 1555 2.81 LINK O TRP A 277 NA NA A 420 1555 1555 2.74 LINK NA NA A 420 O HOH A 507 1555 3455 2.86 LINK OG SER B 52 NA NA B 102 1555 1555 2.85 LINK O ASP B 53 NA NA B 102 1555 1555 2.66 LINK O TYR B 63 NA NA B 102 1555 1555 2.86 LINK NA NA B 102 O HOH B 328 1555 1555 2.77 CISPEP 1 TYR A 92 PRO A 93 0 -6.67 CISPEP 2 TYR A 212 PRO A 213 0 1.53 CISPEP 3 HIS B 31 PRO B 32 0 5.87 CRYST1 57.889 80.280 92.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010787 0.00000