HEADER DE NOVO PROTEIN 27-JUL-17 5WLJ TITLE DE NOVO DESIGN OF POLYNUCLEAR TRANSITION METAL CLUSTERS IN HELIX TITLE 2 BUNDLES-4EH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO METAL BINDING HELICAL BUNDLE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS PROTEIN DESIGN, HELICAL BUNDLE, METAL ION BINDING, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.-Q.ZHANG,L.LIU,W.F.DEGRADO REVDAT 5 04-OCT-23 5WLJ 1 LINK REVDAT 4 01-JAN-20 5WLJ 1 REMARK REVDAT 3 07-FEB-18 5WLJ 1 JRNL REVDAT 2 31-JAN-18 5WLJ 1 JRNL REVDAT 1 03-JAN-18 5WLJ 0 JRNL AUTH S.Q.ZHANG,M.CHINO,L.LIU,Y.TANG,X.HU,W.F.DEGRADO,A.LOMBARDI JRNL TITL DE NOVO DESIGN OF TETRANUCLEAR TRANSITION METAL CLUSTERS JRNL TITL 2 STABILIZED BY HYDROGEN-BONDED NETWORKS IN HELICAL BUNDLES. JRNL REF J. AM. CHEM. SOC. V. 140 1294 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29249157 JRNL DOI 10.1021/JACS.7B08261 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : 4.80000 REMARK 3 B12 (A**2) : -0.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 977 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 970 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1320 ; 1.094 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2246 ; 1.517 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 111 ; 3.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;45.471 ;24.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;13.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 146 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1055 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 178 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 436 ; 0.406 ; 0.945 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 433 ; 0.405 ; 0.943 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 542 ; 0.539 ; 1.418 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 542 ; 0.538 ; 1.418 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 541 ; 0.633 ; 1.100 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 542 ; 0.632 ; 1.100 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 773 ; 0.796 ; 1.612 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3892 ; 2.305 ;19.760 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3798 ; 1.320 ;18.291 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1946 ; 0.550 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 33 ;35.109 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2025 ; 8.081 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4209 -4.2996 8.0475 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0717 REMARK 3 T33: 0.0118 T12: 0.0114 REMARK 3 T13: 0.0006 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.7373 L22: 13.9666 REMARK 3 L33: 3.1501 L12: -6.1619 REMARK 3 L13: 2.4848 L23: -4.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0290 S13: -0.2136 REMARK 3 S21: 0.0905 S22: 0.1042 S23: 0.2647 REMARK 3 S31: 0.1228 S32: -0.0435 S33: -0.0924 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5787 -1.9653 4.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0947 REMARK 3 T33: 0.0051 T12: 0.0188 REMARK 3 T13: -0.0053 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.6626 L22: 15.9919 REMARK 3 L33: 2.0030 L12: -5.6762 REMARK 3 L13: -0.4742 L23: 0.7482 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.1570 S13: 0.0802 REMARK 3 S21: 0.0277 S22: 0.1467 S23: -0.2170 REMARK 3 S31: 0.0241 S32: 0.0360 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 27 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0443 34.8988 4.8542 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.1374 REMARK 3 T33: 0.1570 T12: 0.1030 REMARK 3 T13: 0.0471 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.9147 L22: 25.3321 REMARK 3 L33: 0.7163 L12: -7.4220 REMARK 3 L13: 0.0346 L23: 0.6528 REMARK 3 S TENSOR REMARK 3 S11: 0.2471 S12: 0.0680 S13: 0.1296 REMARK 3 S21: -0.9060 S22: -0.0952 S23: -0.3245 REMARK 3 S31: -0.0778 S32: -0.0088 S33: -0.1520 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 27 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2088 35.4785 12.2258 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.1021 REMARK 3 T33: 0.2377 T12: 0.0630 REMARK 3 T13: 0.0038 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 10.1955 L22: 19.2519 REMARK 3 L33: 2.5536 L12: -12.6319 REMARK 3 L13: -2.8652 L23: 4.5608 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.2909 S13: 0.5147 REMARK 3 S21: -0.0127 S22: 0.3368 S23: -0.9328 REMARK 3 S31: -0.0430 S32: 0.1304 S33: -0.2777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE-MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 6% (V/V) ISOPROPANOL AND REMARK 280 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.46267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.92533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.92533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.46267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -326.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.46267 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -281.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.46267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 104 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN C 103 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 12 ZN ZN A 104 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 ASP A 11 OD2 55.7 REMARK 620 3 HIS A 15 NE2 110.2 83.2 REMARK 620 4 HOH A 212 O 104.0 159.7 107.0 REMARK 620 5 ASP B 11 OD2 104.0 74.0 9.2 115.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 HOH A 224 O 106.4 REMARK 620 3 HOH A 229 O 134.8 75.3 REMARK 620 4 HIS B 15 NE2 112.7 114.5 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE1 REMARK 620 2 GLU A 12 OE2 51.2 REMARK 620 3 GLU A 12 OE1 0.0 51.2 REMARK 620 4 GLU A 12 OE2 51.2 0.0 51.2 REMARK 620 5 GLU B 12 OE1 90.1 81.2 90.1 81.2 REMARK 620 6 GLU B 12 OE2 80.7 117.1 80.7 117.1 58.3 REMARK 620 7 GLU B 12 OE1 90.1 81.2 90.1 81.2 0.0 58.3 REMARK 620 8 GLU B 12 OE2 80.7 117.1 80.7 117.1 58.3 0.0 58.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE1 REMARK 620 2 GLU A 12 OE2 38.6 REMARK 620 3 GLU B 12 OE2 104.3 88.4 REMARK 620 4 HIS B 15 ND1 101.5 139.5 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE2 REMARK 620 2 HIS A 15 ND1 116.8 REMARK 620 3 GLU B 12 OE2 84.7 139.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE1 REMARK 620 2 ASP A 21 OD1 104.4 REMARK 620 3 HOH A 213 O 95.9 101.6 REMARK 620 4 ASP B 21 OD2 50.1 126.5 50.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 11 OD1 REMARK 620 2 ASP C 11 OD2 53.5 REMARK 620 3 HIS C 15 NE2 112.2 83.3 REMARK 620 4 HOH C 209 O 114.4 167.8 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 12 OE1 REMARK 620 2 GLU C 12 OE2 53.2 REMARK 620 3 GLU C 12 OE1 0.0 53.2 REMARK 620 4 GLU C 12 OE2 53.2 0.0 53.2 REMARK 620 5 GLU D 12 OE1 80.5 79.6 80.5 79.6 REMARK 620 6 GLU D 12 OE2 79.5 118.9 79.5 118.9 53.7 REMARK 620 7 GLU D 12 OE1 80.5 79.6 80.5 79.6 0.0 53.7 REMARK 620 8 GLU D 12 OE2 79.5 118.9 79.5 118.9 53.7 0.0 53.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 12 OE1 REMARK 620 2 GLU C 12 OE2 42.8 REMARK 620 3 GLU D 12 OE2 96.5 87.5 REMARK 620 4 HIS D 15 ND1 93.1 133.5 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 12 OE2 REMARK 620 2 HIS C 15 ND1 117.4 REMARK 620 3 GLU D 12 OE1 100.0 95.1 REMARK 620 4 GLU D 12 OE2 89.8 136.4 44.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 216 O REMARK 620 2 ASP D 11 OD1 124.4 REMARK 620 3 HIS D 15 NE2 116.9 7.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE B 0 and ILE B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 26 and NH2 B REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ILE C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 26 and NH2 C REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ILE D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 26 and NH2 D REMARK 800 27 DBREF 5WLJ A 0 27 PDB 5WLJ 5WLJ 0 27 DBREF 5WLJ B 0 27 PDB 5WLJ 5WLJ 0 27 DBREF 5WLJ C 0 27 PDB 5WLJ 5WLJ 0 27 DBREF 5WLJ D 0 27 PDB 5WLJ 5WLJ 0 27 SEQRES 1 A 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP GLU SEQRES 2 A 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 A 28 LEU NH2 SEQRES 1 B 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP GLU SEQRES 2 B 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 B 28 LEU NH2 SEQRES 1 C 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP GLU SEQRES 2 C 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 C 28 LEU NH2 SEQRES 1 D 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP GLU SEQRES 2 D 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 D 28 LEU NH2 HET ACE A 0 3 HET NH2 A 27 1 HET ACE B 0 3 HET NH2 B 27 1 HET ACE C 0 3 HET NH2 C 27 1 HET ACE D 0 3 HET NH2 D 27 1 HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET ZN A 104 3 HET ZN C 101 1 HET ZN C 102 1 HET ZN C 103 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION FORMUL 1 ACE 4(C2 H4 O) FORMUL 1 NH2 4(H2 N) FORMUL 5 ZN 7(ZN 2+) FORMUL 12 HOH *112(H2 O) HELIX 1 AA1 ILE A 1 LEU A 26 1 26 HELIX 2 AA2 ILE B 1 LEU B 26 1 26 HELIX 3 AA3 ILE C 1 LEU C 26 1 26 HELIX 4 AA4 ILE D 1 LEU D 26 1 26 LINK C ACE A 0 N ILE A 1 1555 1555 1.33 LINK C LEU A 26 N NH2 A 27 1555 1555 1.35 LINK C ACE B 0 N ILE B 1 1555 1555 1.33 LINK C LEU B 26 N NH2 B 27 1555 1555 1.35 LINK C ACE C 0 N ILE C 1 1555 1555 1.34 LINK C LEU C 26 N NH2 C 27 1555 1555 1.35 LINK C ACE D 0 N ILE D 1 1555 1555 1.33 LINK C LEU D 26 N NH2 D 27 1555 1555 1.35 LINK OD1AASP A 11 ZN ZN A 101 1555 1555 2.03 LINK OD2AASP A 11 ZN ZN A 101 1555 1555 2.57 LINK OD2BASP A 11 ZN ZN A 102 1555 1555 1.79 LINK OE1 GLU A 12 ZN B ZN A 104 1555 1555 2.63 LINK OE1 GLU A 12 ZN A ZN A 104 1555 1555 1.80 LINK OE2 GLU A 12 ZN B ZN A 104 1555 1555 2.36 LINK OE2 GLU A 12 ZN C ZN A 104 1555 1555 2.41 LINK OE1 GLU A 12 ZN B ZN A 104 1555 6555 2.63 LINK OE2 GLU A 12 ZN B ZN A 104 1555 6555 2.36 LINK OE2 GLU A 12 ZN A ZN A 104 1555 6555 1.83 LINK NE2 HIS A 15 ZN ZN A 101 1555 1555 2.02 LINK ND1 HIS A 15 ZN C ZN A 104 1555 1555 1.90 LINK OE1 GLU A 20 ZN ZN A 103 1555 1555 1.94 LINK OD1 ASP A 21 ZN ZN A 103 1555 1555 1.92 LINK ZN ZN A 101 O HOH A 212 1555 1555 2.08 LINK ZN ZN A 101 OD2 ASP B 11 6555 1555 1.86 LINK ZN ZN A 102 O HOH A 224 1555 1555 2.28 LINK ZN ZN A 102 O BHOH A 229 1555 1555 2.27 LINK ZN ZN A 102 NE2 HIS B 15 6555 1555 2.06 LINK ZN ZN A 103 O HOH A 213 1555 1555 2.02 LINK ZN ZN A 103 OD2 ASP B 21 4555 1555 1.91 LINK ZN B ZN A 104 OE1 GLU B 12 1555 1555 2.31 LINK ZN B ZN A 104 OE2 GLU B 12 1555 1555 2.17 LINK ZN A ZN A 104 OE2 GLU B 12 1555 1555 2.16 LINK ZN B ZN A 104 OE1 GLU B 12 6555 1555 2.31 LINK ZN B ZN A 104 OE2 GLU B 12 6555 1555 2.17 LINK ZN C ZN A 104 OE2 GLU B 12 6555 1555 1.83 LINK ZN A ZN A 104 ND1 HIS B 15 1555 1555 1.95 LINK OD1BASP C 11 ZN B ZN C 101 1555 1555 1.98 LINK OD2BASP C 11 ZN B ZN C 101 1555 1555 2.69 LINK OE1 GLU C 12 ZN B ZN C 103 1555 1555 2.59 LINK OE1 GLU C 12 ZN A ZN C 103 1555 1555 1.82 LINK OE2 GLU C 12 ZN B ZN C 103 1555 1555 2.21 LINK OE2 GLU C 12 ZN C ZN C 103 1555 1555 2.25 LINK OE1 GLU C 12 ZN B ZN C 103 1555 6555 2.59 LINK OE2 GLU C 12 ZN A ZN C 103 1555 6555 1.78 LINK OE2 GLU C 12 ZN B ZN C 103 1555 6555 2.21 LINK NE2 HIS C 15 ZN B ZN C 101 1555 1555 2.05 LINK ND1 HIS C 15 ZN C ZN C 103 1555 1555 2.02 LINK ZN B ZN C 101 O HOH C 209 1555 1555 2.51 LINK ZN C ZN C 102 O HOH C 216 1555 1555 2.43 LINK ZN C ZN C 102 OD1CASP D 11 6555 1555 1.98 LINK ZN C ZN C 102 NE2 HIS D 15 6555 1555 2.07 LINK ZN B ZN C 103 OE1 GLU D 12 1555 1555 2.58 LINK ZN C ZN C 103 OE1 GLU D 12 1555 1555 1.74 LINK ZN B ZN C 103 OE2 GLU D 12 1555 1555 2.20 LINK ZN A ZN C 103 OE2 GLU D 12 1555 1555 2.29 LINK ZN B ZN C 103 OE1 GLU D 12 6555 1555 2.58 LINK ZN B ZN C 103 OE2 GLU D 12 6555 1555 2.20 LINK ZN C ZN C 103 OE2 GLU D 12 6555 1555 1.84 LINK ZN A ZN C 103 ND1 HIS D 15 1555 1555 1.99 SITE 1 AC1 4 ASP A 11 HIS A 15 HOH A 212 ASP B 11 SITE 1 AC2 5 ASP A 11 HOH A 205 HOH A 224 HOH A 229 SITE 2 AC2 5 HIS B 15 SITE 1 AC3 4 GLU A 20 ASP A 21 HOH A 213 ASP B 21 SITE 1 AC4 4 GLU A 12 HIS A 15 GLU B 12 HIS B 15 SITE 1 AC5 5 ASP C 11 ARG C 14 HIS C 15 HOH C 209 SITE 2 AC5 5 ASP D 11 SITE 1 AC6 5 ASP C 11 HOH C 216 ASP D 11 ARG D 14 SITE 2 AC6 5 HIS D 15 SITE 1 AC7 4 GLU C 12 HIS C 15 GLU D 12 HIS D 15 SITE 1 AC8 7 GLU B 2 GLU B 3 LEU B 4 LEU B 5 SITE 2 AC8 7 HOH B 203 TRP D 25 LEU D 26 SITE 1 AC9 8 GLU A 2 LEU A 5 ILE B 22 GLU B 23 SITE 2 AC9 8 LYS B 24 TRP B 25 ILE D 1 GLU D 2 SITE 1 AD1 9 LYS A 24 TRP A 25 LEU A 26 NH2 A 27 SITE 2 AD1 9 GLU C 2 GLU C 3 LEU C 4 LEU C 5 SITE 3 AD1 9 HOH C 207 SITE 1 AD2 7 ILE A 1 GLU A 2 HOH A 219 ILE C 22 SITE 2 AD2 7 GLU C 23 LYS C 24 TRP C 25 SITE 1 AD3 7 TRP B 25 LEU B 26 GLU D 2 GLU D 3 SITE 2 AD3 7 LEU D 4 LEU D 5 HOH D 201 SITE 1 AD4 7 ILE B 1 GLU B 2 ILE D 22 GLU D 23 SITE 2 AD4 7 LYS D 24 TRP D 25 HOH D 212 CRYST1 80.828 80.828 64.388 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012372 0.007143 0.000000 0.00000 SCALE2 0.000000 0.014286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015531 0.00000 HETATM 1 C ACE A 0 2.647 -20.223 14.712 1.00 25.26 C ANISOU 1 C ACE A 0 4196 2340 3060 958 -339 328 C HETATM 2 O ACE A 0 1.873 -19.284 14.603 1.00 24.39 O ANISOU 2 O ACE A 0 4071 2268 2928 877 -223 447 O HETATM 3 CH3 ACE A 0 2.202 -21.526 15.342 1.00 28.05 C ANISOU 3 CH3 ACE A 0 4536 2432 3687 906 -258 531 C