HEADER DE NOVO PROTEIN 27-JUL-17 5WLL TITLE DE NOVO DESIGN OF POLYNUCLEAR TRANSITION METAL CLUSTERS IN HELIX TITLE 2 BUNDLES-4DH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICAL BUNDLE 4DH1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS PROTEIN DESIGN, HELICAL BUNDLE, METAL BINDING, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.-Q.ZHANG,L.LIU,W.F.DEGRADO REVDAT 4 01-JAN-20 5WLL 1 REMARK REVDAT 3 07-FEB-18 5WLL 1 JRNL REVDAT 2 31-JAN-18 5WLL 1 JRNL REVDAT 1 03-JAN-18 5WLL 0 JRNL AUTH S.Q.ZHANG,M.CHINO,L.LIU,Y.TANG,X.HU,W.F.DEGRADO,A.LOMBARDI JRNL TITL DE NOVO DESIGN OF TETRANUCLEAR TRANSITION METAL CLUSTERS JRNL TITL 2 STABILIZED BY HYDROGEN-BONDED NETWORKS IN HELICAL BUNDLES. JRNL REF J. AM. CHEM. SOC. V. 140 1294 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29249157 JRNL DOI 10.1021/JACS.7B08261 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 15869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 387 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 28.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.5140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 958 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 961 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1290 ; 1.162 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2203 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 106 ; 4.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;36.505 ;23.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 199 ;15.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 145 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1017 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 185 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 430 ; 0.328 ; 1.666 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 427 ; 0.328 ; 1.665 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 533 ; 0.548 ; 2.495 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 533 ; 0.548 ; 2.495 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 528 ; 0.360 ; 1.797 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 528 ; 0.345 ; 1.798 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 755 ; 0.593 ; 2.658 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3643 ; 3.086 ;31.048 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3643 ; 3.085 ;31.042 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5210 -4.2550 8.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0291 REMARK 3 T33: 0.0060 T12: 0.0101 REMARK 3 T13: -0.0025 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.7322 L22: 9.7322 REMARK 3 L33: 2.0258 L12: -5.1548 REMARK 3 L13: 2.0068 L23: -3.3156 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: -0.0828 S13: -0.1234 REMARK 3 S21: 0.2884 S22: 0.1475 S23: 0.1068 REMARK 3 S31: -0.0458 S32: 0.0983 S33: -0.0694 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5240 -2.1710 4.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0309 REMARK 3 T33: 0.0069 T12: 0.0065 REMARK 3 T13: 0.0003 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7475 L22: 8.7414 REMARK 3 L33: 1.6410 L12: -2.2910 REMARK 3 L13: -0.6114 L23: 1.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.0106 S13: 0.0863 REMARK 3 S21: -0.1292 S22: 0.1148 S23: -0.1883 REMARK 3 S31: -0.0090 S32: -0.0055 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 27 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1560 35.0290 4.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0801 REMARK 3 T33: 0.0503 T12: 0.0371 REMARK 3 T13: 0.0056 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9112 L22: 7.0034 REMARK 3 L33: 0.0624 L12: -2.0227 REMARK 3 L13: -0.0943 L23: 0.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.0035 S13: 0.0224 REMARK 3 S21: -0.2100 S22: -0.0584 S23: -0.1076 REMARK 3 S31: -0.0116 S32: -0.0525 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 27 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9750 35.1810 12.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.0277 REMARK 3 T33: 0.0813 T12: 0.0333 REMARK 3 T13: 0.0024 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 8.5942 L22: 12.2222 REMARK 3 L33: 1.5514 L12: -8.9347 REMARK 3 L13: -2.5328 L23: 3.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: -0.2660 S13: 0.5059 REMARK 3 S21: -0.1030 S22: 0.3504 S23: -0.6512 REMARK 3 S31: -0.0717 S32: 0.0984 S33: -0.2132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE-MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.84400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0% PEG1000, 1.0 M AMSO4 AND 0.1 M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.64100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.28200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.28200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.64100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -290.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.64100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -256.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.64100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 209 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 201 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 HIS A 15 ND1 108.2 REMARK 620 3 ASP B 12 OD2 93.2 100.1 REMARK 620 4 HOH B 203 O 143.3 108.1 74.8 REMARK 620 5 HOH B 203 O 143.2 108.1 74.9 0.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 ASP B 12 OD1 95.6 REMARK 620 3 HIS B 15 ND1 143.0 103.3 REMARK 620 4 HOH A 209 O 68.5 155.4 100.4 REMARK 620 5 HOH A 209 O 68.5 155.4 100.4 0.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE1 REMARK 620 2 ASP A 21 OD1 104.9 REMARK 620 3 HOH A 213 O 96.4 111.3 REMARK 620 4 ASP B 21 OD2 48.7 130.0 50.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 12 OD1 REMARK 620 2 HIS C 15 ND1 103.5 REMARK 620 3 ASP D 12 OD2 112.6 97.6 REMARK 620 4 HOH D 201 O 151.8 104.5 66.6 REMARK 620 5 HOH D 201 O 151.8 104.5 66.6 0.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 12 OD2 REMARK 620 2 ASP D 12 OD1 118.8 REMARK 620 3 HIS D 15 ND1 105.1 103.7 REMARK 620 4 HOH C 204 O 73.1 140.2 109.3 REMARK 620 5 HOH C 204 O 73.2 140.2 109.3 0.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE B 0 and ILE B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 26 and NH2 B REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ILE C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 26 and NH2 C REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ILE D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 26 and NH2 D REMARK 800 27 DBREF 5WLL A 0 27 PDB 5WLL 5WLL 0 27 DBREF 5WLL B 0 27 PDB 5WLL 5WLL 0 27 DBREF 5WLL C 0 27 PDB 5WLL 5WLL 0 27 DBREF 5WLL D 0 27 PDB 5WLL 5WLL 0 27 SEQRES 1 A 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP ASP SEQRES 2 A 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 A 28 LEU NH2 SEQRES 1 B 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP ASP SEQRES 2 B 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 B 28 LEU NH2 SEQRES 1 C 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP ASP SEQRES 2 C 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 C 28 LEU NH2 SEQRES 1 D 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE LEU GLU ASP ASP SEQRES 2 D 28 ALA ARG HIS VAL ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 D 28 LEU NH2 HET ACE A 0 3 HET NH2 A 27 1 HET ACE B 0 3 HET NH2 B 27 1 HET ACE C 0 3 HET NH2 C 27 1 HET ACE D 0 3 HET NH2 D 27 1 HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET GOL B 101 6 HET GOL B 102 6 HET ZN C 101 1 HET ZN C 102 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ACE 4(C2 H4 O) FORMUL 1 NH2 4(H2 N) FORMUL 5 ZN 5(ZN 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 12 HOH *74(H2 O) HELIX 1 AA1 ILE A 1 LEU A 26 1 26 HELIX 2 AA2 ILE B 1 LEU B 26 1 26 HELIX 3 AA3 ILE C 1 LEU C 26 1 26 HELIX 4 AA4 ILE D 1 LEU D 26 1 26 LINK C ACE A 0 N ILE A 1 1555 1555 1.33 LINK OD1 ASP A 12 ZN ZN A 101 1555 1555 2.54 LINK OD1 ASP A 12 ZN ZN A 103 1555 1555 2.65 LINK ND1 HIS A 15 ZN ZN A 101 1555 1555 2.11 LINK OE1 GLU A 20 ZN ZN A 102 1555 1555 1.96 LINK OD1 ASP A 21 ZN ZN A 102 1555 1555 1.91 LINK C LEU A 26 N NH2 A 27 1555 1555 1.35 LINK C ACE B 0 N ILE B 1 1555 1555 1.34 LINK OD1 ASP B 12 ZN ZN A 103 1555 1555 2.31 LINK OD2 ASP B 12 ZN ZN A 101 1555 1555 2.25 LINK ND1 HIS B 15 ZN ZN A 103 1555 1555 2.15 LINK C LEU B 26 N NH2 B 27 1555 1555 1.35 LINK C ACE C 0 N ILE C 1 1555 1555 1.34 LINK OD1 ASP C 12 ZN ZN C 101 1555 1555 2.28 LINK OD2 ASP C 12 ZN ZN C 102 1555 1555 2.48 LINK ND1 HIS C 15 ZN ZN C 101 1555 1555 2.15 LINK C LEU C 26 N NH2 C 27 1555 1555 1.36 LINK C ACE D 0 N ILE D 1 1555 1555 1.33 LINK OD1 ASP D 12 ZN ZN C 102 1555 1555 2.41 LINK OD2 ASP D 12 ZN ZN C 101 1555 1555 2.47 LINK ND1 HIS D 15 ZN ZN C 102 1555 1555 2.11 LINK C LEU D 26 N NH2 D 27 1555 1555 1.33 LINK ZN ZN A 101 O HOH B 203 1555 1555 2.07 LINK ZN ZN A 102 O HOH A 213 1555 1555 1.92 LINK ZN ZN A 103 O HOH A 209 1555 1555 2.33 LINK ZN ZN C 101 O HOH D 201 1555 1555 2.12 LINK ZN ZN C 102 O HOH C 204 1555 1555 1.95 LINK OD2 ASP B 21 ZN ZN A 102 1555 4555 1.82 LINK ZN ZN A 101 O HOH B 203 1555 6555 2.07 LINK ZN ZN A 103 O HOH A 209 1555 6555 2.33 LINK ZN ZN C 101 O HOH D 201 1555 6555 2.12 LINK ZN ZN C 102 O HOH C 204 1555 6555 1.95 SITE 1 AC1 5 ASP A 12 HIS A 15 ZN A 103 ASP B 12 SITE 2 AC1 5 HOH B 203 SITE 1 AC2 4 GLU A 20 ASP A 21 HOH A 213 ASP B 21 SITE 1 AC3 5 ASP A 12 ZN A 101 HOH A 209 ASP B 12 SITE 2 AC3 5 HIS B 15 SITE 1 AC4 1 TRP C 25 SITE 1 AC5 6 LYS A 7 ASP A 11 LYS A 24 ARG B 14 SITE 2 AC5 6 HIS B 15 GLU B 18 SITE 1 AC6 5 ASP C 12 HIS C 15 ZN C 102 ASP D 12 SITE 2 AC6 5 HOH D 201 SITE 1 AC7 5 ASP C 12 ZN C 101 HOH C 204 ASP D 12 SITE 2 AC7 5 HIS D 15 SITE 1 AC8 7 GLU B 2 GLU B 3 LEU B 4 LEU B 5 SITE 2 AC8 7 HOH B 205 TRP D 25 LEU D 26 SITE 1 AC9 8 GLU A 2 LEU A 5 ILE B 22 GLU B 23 SITE 2 AC9 8 LYS B 24 TRP B 25 ILE D 1 GLU D 2 SITE 1 AD1 9 LYS A 24 TRP A 25 LEU A 26 GLU C 2 SITE 2 AD1 9 GLU C 3 LEU C 4 LEU C 5 HOH C 209 SITE 3 AD1 9 LEU D 26 SITE 1 AD2 7 ILE A 1 GLU A 2 ILE C 22 GLU C 23 SITE 2 AD2 7 LYS C 24 TRP C 25 HOH C 212 SITE 1 AD3 7 TRP B 25 LEU B 26 GLU D 2 GLU D 3 SITE 2 AD3 7 LEU D 4 LEU D 5 HOH D 205 SITE 1 AD4 7 ILE B 1 GLU B 2 ILE C 1 ILE D 22 SITE 2 AD4 7 GLU D 23 LYS D 24 TRP D 25 CRYST1 80.782 80.782 64.923 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012379 0.007147 0.000000 0.00000 SCALE2 0.000000 0.014294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015403 0.00000 HETATM 1 C ACE A 0 2.798 -20.185 14.858 1.00 23.67 C ANISOU 1 C ACE A 0 3110 2781 3099 847 -401 349 C HETATM 2 O ACE A 0 1.992 -19.258 14.745 1.00 23.10 O ANISOU 2 O ACE A 0 3038 2726 3012 802 -323 373 O HETATM 3 CH3 ACE A 0 2.348 -21.531 15.381 1.00 24.88 C ANISOU 3 CH3 ACE A 0 3249 2797 3408 904 -356 513 C