HEADER DE NOVO PROTEIN 27-JUL-17 5WLM TITLE DE NOVO DESIGN OF POLYNUCLEAR TRANSITION METAL CLUSTERS IN HELIX TITLE 2 BUNDLES-4DH2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICAL BUNDLE 4DH2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS PROTEIN DESIGN, HELICAL BUNDLE, METAL BINDING, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.-Q.ZHANG,L.LIU,W.F.DEGRADO REVDAT 7 04-OCT-23 5WLM 1 REMARK REVDAT 6 13-APR-22 5WLM 1 COMPND REMARK DBREF LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 01-JAN-20 5WLM 1 REMARK REVDAT 4 30-MAY-18 5WLM 1 REMARK REVDAT 3 07-FEB-18 5WLM 1 JRNL REVDAT 2 31-JAN-18 5WLM 1 JRNL REVDAT 1 03-JAN-18 5WLM 0 JRNL AUTH S.Q.ZHANG,M.CHINO,L.LIU,Y.TANG,X.HU,W.F.DEGRADO,A.LOMBARDI JRNL TITL DE NOVO DESIGN OF TETRANUCLEAR TRANSITION METAL CLUSTERS JRNL TITL 2 STABILIZED BY HYDROGEN-BONDED NETWORKS IN HELICAL BUNDLES. JRNL REF J. AM. CHEM. SOC. V. 140 1294 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29249157 JRNL DOI 10.1021/JACS.7B08261 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 474 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.1930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.65000 REMARK 3 B22 (A**2) : -10.65000 REMARK 3 B33 (A**2) : 21.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 928 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 940 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1248 ; 1.117 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2156 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 100 ; 3.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;37.418 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 200 ;16.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 144 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 976 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 168 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 424 ; 0.191 ; 1.590 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 422 ; 0.191 ; 1.590 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 524 ; 0.254 ; 2.383 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 524 ; 0.254 ; 2.383 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 504 ; 0.165 ; 1.611 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 505 ; 0.165 ; 1.611 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 725 ; 0.251 ; 2.412 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3561 ; 1.390 ;29.433 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3558 ; 1.388 ;29.372 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.674 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5271 -4.6897 -5.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.1471 REMARK 3 T33: 0.0174 T12: 0.0262 REMARK 3 T13: -0.0004 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 7.1383 L22: 12.3023 REMARK 3 L33: 3.2750 L12: 6.5156 REMARK 3 L13: 1.2098 L23: 2.6351 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.1792 S13: -0.1532 REMARK 3 S21: 0.1027 S22: -0.0449 S23: 0.0840 REMARK 3 S31: 0.1080 S32: -0.1214 S33: 0.0623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4660 1.6246 -4.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.1456 REMARK 3 T33: 0.0060 T12: 0.0048 REMARK 3 T13: -0.0162 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 8.9220 L22: 14.2750 REMARK 3 L33: 2.6911 L12: 8.0381 REMARK 3 L13: -1.5454 L23: -2.5195 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0121 S13: 0.0937 REMARK 3 S21: -0.0762 S22: 0.0234 S23: 0.1105 REMARK 3 S31: 0.0237 S32: -0.0686 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 26 REMARK 3 ORIGIN FOR THE GROUP (A): -26.7275 -35.2790 -3.7256 REMARK 3 T TENSOR REMARK 3 T11: 0.4311 T22: 0.2827 REMARK 3 T33: 0.3585 T12: -0.1067 REMARK 3 T13: -0.0171 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 8.1512 L22: 9.7089 REMARK 3 L33: 1.6356 L12: 7.8748 REMARK 3 L13: -2.3222 L23: -1.5747 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: 0.2069 S13: 0.6505 REMARK 3 S21: 0.0271 S22: 0.3879 S23: 0.7494 REMARK 3 S31: -0.0886 S32: 0.0202 S33: -0.2869 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 26 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5630 -33.6178 4.6687 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.2688 REMARK 3 T33: 0.3196 T12: -0.1275 REMARK 3 T13: 0.0628 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.6868 L22: 13.7190 REMARK 3 L33: 1.1918 L12: 4.4197 REMARK 3 L13: 0.0483 L23: -0.5306 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.0375 S13: 0.2910 REMARK 3 S21: 0.3488 S22: 0.1012 S23: 0.6753 REMARK 3 S31: 0.0710 S32: -0.0569 S33: -0.1547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE-MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M NICL2, 1.0 M LI2SO4 AND 0.1 M REMARK 280 TRIS PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.11033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.22067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.22067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.11033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -252.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 304 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 HIS A 15 ND1 97.1 REMARK 620 3 ASP B 12 OD2 88.0 107.0 REMARK 620 4 HOH B 304 O 160.3 97.0 101.0 REMARK 620 5 HOH B 304 O 160.3 97.0 101.0 0.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 HOH A 307 O 93.5 REMARK 620 3 HOH A 307 O 93.5 0.0 REMARK 620 4 HIS B 15 ND1 106.9 99.8 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 HOH A 306 O 116.7 REMARK 620 3 ASP B 21 OD1 74.6 120.9 REMARK 620 4 HOH B 303 O 110.3 125.0 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 12 OD2 REMARK 620 2 HOH C 303 O 97.2 REMARK 620 3 HOH C 303 O 97.2 0.0 REMARK 620 4 HIS D 15 ND1 101.6 102.8 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 15 ND1 REMARK 620 2 ASP D 12 OD2 111.3 REMARK 620 3 HOH D 304 O 97.9 96.9 REMARK 620 4 HOH D 304 O 97.9 96.9 0.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH2 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE B 0 and ILE B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NH2 B 101 and LEU B REMARK 800 26 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ILE C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NH2 C 101 and LEU C REMARK 800 26 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ILE D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NH2 D 101 and LEU D REMARK 800 26 DBREF 5WLM A 0 101 PDB 5WLM 5WLM 0 101 DBREF 5WLM B 0 101 PDB 5WLM 5WLM 0 101 DBREF 5WLM C 0 101 PDB 5WLM 5WLM 0 101 DBREF 5WLM D 0 101 PDB 5WLM 5WLM 0 101 SEQRES 1 A 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE ILE GLU ASP ASP SEQRES 2 A 28 VAL ARG HIS ILE ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 A 28 LEU NH2 SEQRES 1 B 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE ILE GLU ASP ASP SEQRES 2 B 28 VAL ARG HIS ILE ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 B 28 LEU NH2 SEQRES 1 C 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE ILE GLU ASP ASP SEQRES 2 C 28 VAL ARG HIS ILE ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 C 28 LEU NH2 SEQRES 1 D 28 ACE ILE GLU GLU LEU LEU ARG LYS ILE ILE GLU ASP ASP SEQRES 2 D 28 VAL ARG HIS ILE ALA GLU LEU GLU ASP ILE GLU LYS TRP SEQRES 3 D 28 LEU NH2 HET ACE A 0 3 HET NH2 A 101 1 HET ACE B 0 3 HET NH2 B 101 1 HET ACE C 0 3 HET NH2 C 101 1 HET ACE D 0 3 HET NH2 D 101 1 HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN C 201 1 HET ZN D 201 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION FORMUL 1 ACE 4(C2 H4 O) FORMUL 1 NH2 4(H2 N) FORMUL 5 ZN 5(ZN 2+) FORMUL 10 HOH *20(H2 O) HELIX 1 AA1 ILE A 1 LEU A 26 1 26 HELIX 2 AA2 ILE B 1 LEU B 26 1 26 HELIX 3 AA3 ILE C 1 LEU C 26 1 26 HELIX 4 AA4 ILE D 1 LEU D 26 1 26 LINK C ACE A 0 N ILE A 1 1555 1555 1.33 LINK C LEU A 26 N NH2 A 101 1555 1555 1.35 LINK C ACE B 0 N ILE B 1 1555 1555 1.34 LINK C LEU B 26 N NH2 B 101 1555 1555 1.35 LINK C ACE C 0 N ILE C 1 1555 1555 1.34 LINK C LEU C 26 N NH2 C 101 1555 1555 1.35 LINK C ACE D 0 N ILE D 1 1555 1555 1.34 LINK C LEU D 26 N NH2 D 101 1555 1555 1.34 LINK OD1 ASP A 12 ZN ZN A 201 1555 1555 2.65 LINK OD2 ASP A 12 ZN ZN B 201 1555 1555 2.04 LINK ND1 HIS A 15 ZN ZN A 201 1555 1555 2.10 LINK OD2 ASP A 21 ZN ZN A 202 1555 1555 2.23 LINK ZN ZN A 201 OD2 ASP B 12 1555 1555 2.01 LINK ZN ZN A 201 O HOH B 304 1555 1555 2.28 LINK ZN ZN A 201 O HOH B 304 1555 4555 2.28 LINK ZN ZN A 202 O HOH A 306 1555 1555 2.21 LINK ZN ZN A 202 OD1 ASP B 21 5554 1555 2.10 LINK ZN ZN A 202 O HOH B 303 1555 5554 2.46 LINK O HOH A 307 ZN ZN B 201 1555 1555 2.10 LINK O HOH A 307 ZN ZN B 201 4555 1555 2.10 LINK ND1 HIS B 15 ZN ZN B 201 1555 1555 2.18 LINK OD2 ASP C 12 ZN ZN D 201 1555 1555 2.01 LINK ND1 HIS C 15 ZN ZN C 201 1555 1555 2.20 LINK ZN ZN C 201 OD2 ASP D 12 1555 1555 1.94 LINK ZN ZN C 201 O HOH D 304 1555 1555 2.26 LINK ZN ZN C 201 O HOH D 304 1555 4555 2.26 LINK O HOH C 303 ZN ZN D 201 1555 1555 2.22 LINK O HOH C 303 ZN ZN D 201 4555 1555 2.22 LINK ND1 HIS D 15 ZN ZN D 201 1555 1555 2.07 SITE 1 AC1 4 GLU A 23 LYS A 24 TRP A 25 LEU A 26 SITE 1 AC2 5 ASP A 12 HIS A 15 ZN B 201 ASP B 12 SITE 2 AC2 5 HOH B 304 SITE 1 AC3 4 ASP A 21 HOH A 306 ASP B 21 HOH B 303 SITE 1 AC4 5 ASP A 12 ZN A 201 HOH A 307 ASP B 12 SITE 2 AC4 5 HIS B 15 SITE 1 AC5 5 ASP C 12 HIS C 15 ZN D 201 ASP D 12 SITE 2 AC5 5 HOH D 304 SITE 1 AC6 5 ASP C 12 ZN C 201 HOH C 303 ASP D 12 SITE 2 AC6 5 HIS D 15 SITE 1 AC7 6 GLU B 2 GLU B 3 LEU B 4 LEU B 5 SITE 2 AC7 6 TRP D 25 LEU D 26 SITE 1 AC8 6 ILE B 22 GLU B 23 LYS B 24 TRP B 25 SITE 2 AC8 6 ILE D 1 GLU D 2 SITE 1 AC9 7 TRP A 25 LEU A 26 GLU C 2 GLU C 3 SITE 2 AC9 7 LEU C 4 LEU C 5 HOH C 302 SITE 1 AD1 6 ILE A 1 GLU A 2 ILE C 22 GLU C 23 SITE 2 AD1 6 LYS C 24 TRP C 25 SITE 1 AD2 6 TRP B 25 LEU B 26 GLU D 2 GLU D 3 SITE 2 AD2 6 LEU D 4 LEU D 5 SITE 1 AD3 6 ILE B 1 GLU B 2 ILE D 22 GLU D 23 SITE 2 AD3 6 LYS D 24 TRP D 25 CRYST1 81.156 81.156 66.331 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012322 0.007114 0.000000 0.00000 SCALE2 0.000000 0.014228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015076 0.00000 HETATM 1 C ACE A 0 14.821 7.982 -0.895 1.00 38.96 C ANISOU 1 C ACE A 0 5278 4977 4544 -635 -724 -547 C HETATM 2 O ACE A 0 14.433 6.839 -1.109 1.00 37.73 O ANISOU 2 O ACE A 0 5076 4857 4401 -496 -743 -437 O HETATM 3 CH3 ACE A 0 16.307 8.264 -0.835 1.00 41.76 C ANISOU 3 CH3 ACE A 0 5314 5274 5278 -772 -843 -668 C