HEADER PROTEIN TRANSPORT 27-JUL-17 5WLP TITLE SOLUTION STRUCTURE OF THE PSEUDO-RECEIVER DOMAIN OF ATG32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 32; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSEUDO-RECEIVER DOMAIN; COMPND 5 SYNONYM: EXTRACELLULAR MUTANT PROTEIN 37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: ATG32, ECM17, YIL146C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: 1B KEYWDS ATG32, PSEUDO-RECEIVER DOMAIN, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.XUE,M.PELLEGRINI,M.J.RAGUSA REVDAT 6 14-JUN-23 5WLP 1 REMARK REVDAT 5 01-JAN-20 5WLP 1 REMARK REVDAT 4 20-FEB-19 5WLP 1 REMARK REVDAT 3 19-SEP-18 5WLP 1 JRNL REVDAT 2 15-AUG-18 5WLP 1 JRNL REVDAT 1 04-JUL-18 5WLP 0 JRNL AUTH X.XIA,S.KATZENELL,E.F.REINHART,K.M.BAUER,M.PELLEGRINI, JRNL AUTH 2 M.J.RAGUSA JRNL TITL A PSEUDO-RECEIVER DOMAIN IN ATG32 IS REQUIRED FOR MITOPHAGY. JRNL REF AUTOPHAGY V. 14 1620 2018 JRNL REFN ESSN 1554-8635 JRNL PMID 29909755 JRNL DOI 10.1080/15548627.2018.1472838 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 5WLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228963. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 700 UM [U-15N] ATG32, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.2 MM TCEP, 99% H2O, REMARK 210 1% D2O; 620 UM [U-13C; U-15N] REMARK 210 ATG32, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.2 MM REMARK 210 TCEP, 99% H2O, 1% D2O; 370 UM REMARK 210 ATG32, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.2 MM REMARK 210 TCEP, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D_D2O_NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCACB; 3D HNCO; REMARK 210 3D HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY; 2D DQF-COSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; ASCEND REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, CARA 1.9.1.2, REMARK 210 CANDID, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 17 OXT ASP A 145 1.52 REMARK 500 HZ2 LYS A 39 OE1 GLU A 40 1.56 REMARK 500 HZ3 LYS A 11 OD1 ASP A 145 1.58 REMARK 500 HH21 ARG A 28 OD1 ASP A 52 1.59 REMARK 500 OD1 ASP A 127 HZ2 LYS A 130 1.59 REMARK 500 OE1 GLU A 68 HE ARG A 70 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 -62.86 69.76 REMARK 500 1 LYS A 11 151.46 172.39 REMARK 500 1 LEU A 12 67.61 73.97 REMARK 500 1 SER A 13 -62.98 70.74 REMARK 500 1 LEU A 14 -159.66 -120.82 REMARK 500 1 LYS A 17 158.10 67.65 REMARK 500 1 LYS A 49 -50.15 -140.84 REMARK 500 1 ASP A 52 27.16 47.82 REMARK 500 1 SER A 53 -85.73 -161.64 REMARK 500 1 SER A 83 -62.61 -158.37 REMARK 500 1 GLN A 84 107.08 74.87 REMARK 500 2 THR A 4 4.90 -158.13 REMARK 500 2 ASN A 5 -178.38 179.31 REMARK 500 2 LYS A 11 167.54 176.73 REMARK 500 2 LEU A 12 -170.21 67.91 REMARK 500 2 LYS A 17 -34.26 166.74 REMARK 500 2 ASN A 18 143.69 72.45 REMARK 500 2 ARG A 28 -84.48 53.36 REMARK 500 2 HIS A 51 107.78 -59.92 REMARK 500 2 ASP A 52 -151.81 59.66 REMARK 500 2 SER A 53 -29.40 -34.89 REMARK 500 2 LEU A 69 -65.59 68.21 REMARK 500 2 SER A 83 -63.07 -156.21 REMARK 500 2 GLN A 84 96.17 70.13 REMARK 500 3 ALA A 3 -160.08 -115.29 REMARK 500 3 THR A 4 47.36 -79.36 REMARK 500 3 LEU A 12 -78.47 -128.21 REMARK 500 3 LYS A 49 -47.72 -169.34 REMARK 500 3 HIS A 51 -84.24 69.23 REMARK 500 3 ASP A 52 -58.22 -169.97 REMARK 500 3 SER A 83 -53.27 -153.56 REMARK 500 3 GLN A 84 117.70 70.50 REMARK 500 3 CYS A 92 -23.88 154.08 REMARK 500 4 SER A 6 -71.60 -141.12 REMARK 500 4 VAL A 8 -57.07 -120.18 REMARK 500 4 MET A 9 78.47 63.46 REMARK 500 4 LYS A 11 -174.77 64.12 REMARK 500 4 SER A 13 98.63 177.61 REMARK 500 4 LEU A 14 -72.79 -119.20 REMARK 500 4 PRO A 19 42.76 -73.46 REMARK 500 4 VAL A 20 109.75 -48.14 REMARK 500 4 LYS A 39 -32.78 -38.42 REMARK 500 4 LYS A 49 -49.62 -138.69 REMARK 500 4 ASP A 52 -154.14 70.14 REMARK 500 4 SER A 83 -61.08 -154.66 REMARK 500 4 GLN A 84 113.99 72.33 REMARK 500 4 CYS A 92 -104.01 170.90 REMARK 500 4 PRO A 94 -140.50 -91.40 REMARK 500 4 LEU A 116 -9.49 -140.12 REMARK 500 5 ASN A 2 -70.44 -171.05 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 22 0.08 SIDE CHAIN REMARK 500 4 ARG A 22 0.08 SIDE CHAIN REMARK 500 4 ARG A 28 0.08 SIDE CHAIN REMARK 500 5 ARG A 22 0.12 SIDE CHAIN REMARK 500 5 ARG A 134 0.10 SIDE CHAIN REMARK 500 6 ARG A 22 0.12 SIDE CHAIN REMARK 500 7 ARG A 22 0.08 SIDE CHAIN REMARK 500 8 ARG A 22 0.10 SIDE CHAIN REMARK 500 9 ARG A 22 0.10 SIDE CHAIN REMARK 500 10 ARG A 134 0.10 SIDE CHAIN REMARK 500 12 ARG A 22 0.09 SIDE CHAIN REMARK 500 12 ARG A 134 0.07 SIDE CHAIN REMARK 500 13 ARG A 22 0.09 SIDE CHAIN REMARK 500 13 ARG A 70 0.14 SIDE CHAIN REMARK 500 13 ARG A 134 0.10 SIDE CHAIN REMARK 500 14 ARG A 22 0.09 SIDE CHAIN REMARK 500 14 ARG A 134 0.08 SIDE CHAIN REMARK 500 15 ARG A 70 0.07 SIDE CHAIN REMARK 500 16 ARG A 22 0.09 SIDE CHAIN REMARK 500 16 ARG A 70 0.08 SIDE CHAIN REMARK 500 17 ARG A 22 0.11 SIDE CHAIN REMARK 500 17 ARG A 134 0.10 SIDE CHAIN REMARK 500 18 ARG A 22 0.08 SIDE CHAIN REMARK 500 19 ARG A 22 0.09 SIDE CHAIN REMARK 500 19 ARG A 134 0.08 SIDE CHAIN REMARK 500 20 ARG A 22 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27081 RELATED DB: BMRB DBREF 5WLP A 4 145 UNP P40458 ATG32_YEAST 200 341 SEQADV 5WLP SER A 1 UNP P40458 EXPRESSION TAG SEQADV 5WLP ASN A 2 UNP P40458 EXPRESSION TAG SEQADV 5WLP ALA A 3 UNP P40458 EXPRESSION TAG SEQRES 1 A 145 SER ASN ALA THR ASN SER PHE VAL MET PRO LYS LEU SER SEQRES 2 A 145 LEU THR GLN LYS ASN PRO VAL PHE ARG LEU LEU ILE LEU SEQRES 3 A 145 GLY ARG THR GLY SER SER PHE TYR GLN SER ILE PRO LYS SEQRES 4 A 145 GLU TYR GLN SER LEU PHE GLU LEU PRO LYS TYR HIS ASP SEQRES 5 A 145 SER ALA THR PHE PRO GLN TYR THR GLY ILE VAL ILE ILE SEQRES 6 A 145 PHE GLN GLU LEU ARG GLU MET VAL SER LEU LEU ASN ARG SEQRES 7 A 145 ILE VAL GLN TYR SER GLN GLY LYS PRO VAL ILE PRO ILE SEQRES 8 A 145 CYS GLN PRO GLY GLN VAL ILE GLN VAL LYS ASN VAL LEU SEQRES 9 A 145 LYS SER PHE LEU ARG ASN LYS LEU VAL LYS LEU LEU PHE SEQRES 10 A 145 PRO PRO VAL VAL VAL THR ASN LYS ARG ASP LEU LYS LYS SEQRES 11 A 145 MET PHE GLN ARG LEU GLN ASP LEU SER LEU GLU TYR GLY SEQRES 12 A 145 GLU ASP HELIX 1 AA1 PHE A 33 ILE A 37 5 5 HELIX 2 AA2 PRO A 38 SER A 43 1 6 HELIX 3 AA3 GLU A 68 TYR A 82 1 15 HELIX 4 AA4 GLN A 96 LEU A 104 1 9 HELIX 5 AA5 LEU A 104 ARG A 109 1 6 HELIX 6 AA6 ASP A 127 PHE A 132 1 6 HELIX 7 AA7 PHE A 132 GLY A 143 1 12 SHEET 1 AA1 4 PHE A 45 GLU A 46 0 SHEET 2 AA1 4 LEU A 23 GLY A 27 1 N ILE A 25 O GLU A 46 SHEET 3 AA1 4 GLY A 61 ILE A 65 1 O GLY A 61 N LEU A 24 SHEET 4 AA1 4 ILE A 89 ILE A 91 1 O ILE A 89 N ILE A 64 SHEET 1 AA2 2 LYS A 86 PRO A 87 0 SHEET 2 AA2 2 VAL A 113 LYS A 114 1 O LYS A 114 N LYS A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1