HEADER HYDROLASE 28-JUL-17 5WLY TITLE E. COLI LPXH- 8 MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 5 EC: 3.6.1.54; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5ALPHA; SOURCE 5 GENE: LPXH, AUQ13_20415, BK337_17315, BUE81_23120, EC3234A_5C00260, SOURCE 6 PGD_02789; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL-21 DE3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24+ KEYWDS LIPID A SYNTHESIS, OPEN CONFORMATION, UDP-DIACYL-GLUCOSAMINE KEYWDS 2 PYROPHOSPHOHYDROLASE, APHA/BETA-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.BOHL,H.AIHARA,K.SHI,J.K.LEE REVDAT 6 04-OCT-23 5WLY 1 REMARK REVDAT 5 01-JAN-20 5WLY 1 REMARK REVDAT 4 11-JUL-18 5WLY 1 TITLE REVDAT 3 06-JUN-18 5WLY 1 COMPND JRNL HETNAM REVDAT 2 18-APR-18 5WLY 1 JRNL REVDAT 1 11-APR-18 5WLY 0 JRNL AUTH T.E.BOHL,P.IEONG,J.K.LEE,T.LEE,J.KANKANALA,K.SHI,O.DEMIR, JRNL AUTH 2 K.KURAHASHI,R.E.AMARO,Z.WANG,H.AIHARA JRNL TITL THE SUBSTRATE-BINDING CAP OF THE UDP-DIACYLGLUCOSAMINE JRNL TITL 2 PYROPHOSPHATASE LPXH IS HIGHLY FLEXIBLE, ENABLING FACILE JRNL TITL 3 SUBSTRATE BINDING AND PRODUCT RELEASE. JRNL REF J. BIOL. CHEM. V. 293 7969 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29626094 JRNL DOI 10.1074/JBC.RA118.002503 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 14750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.1600 - 2.0000 0.71 2414 117 0.3310 0.3626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VOCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 66.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX V1.11.1_2575 REMARK 200 STARTING MODEL: 5B4A REMARK 200 REMARK 200 REMARK: PARALLELOGRAM SHAPED PLATE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.1 G/L PROTEIN IN 0.25 M NACL, 10 MM REMARK 280 TRIS-HCL PH 7.4, 2.5 MM DTT, 1.25 MM MNCL2, AND 20 MM REDUCED REMARK 280 GLUTATHIONE WAS COMBINED 2:1 (PROTEIN TO WELL SOLUTION) WITH 0.1 REMARK 280 M TRIS-HCL PH 8.2, 80 MM MAGNESIUM FORMATE, AND 5% 2-PROPANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.50600 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.02350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.50600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.02350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.01200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 122 REMARK 465 ALA A 123 REMARK 465 GLY A 124 REMARK 465 TYR A 125 REMARK 465 GLN A 126 REMARK 465 ALA A 127 REMARK 465 PHE A 128 REMARK 465 ARG A 129 REMARK 465 ALA A 130 REMARK 465 ALA A 162 REMARK 465 ALA A 163 REMARK 465 ASN A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 LEU A 169 REMARK 465 ALA A 170 REMARK 465 ILE A 171 REMARK 465 MET A 172 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 CD CE NZ REMARK 470 ARG A 90 NE CZ NH1 NH2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 THR A 120 OG1 CG2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 VAL A 132 CG1 CG2 REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 138 CD OE1 NE2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ASN A 177 CG OD1 ND2 REMARK 470 ARG A 198 NE CZ NH1 NH2 REMARK 470 GLN A 208 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 203 O HOH A 403 1.44 REMARK 500 O PRO A 135 H THR A 139 1.55 REMARK 500 HH22 ARG A 57 O HOH A 406 1.56 REMARK 500 O HOH A 526 O HOH A 546 1.68 REMARK 500 O HOH A 498 O HOH A 513 1.68 REMARK 500 O HOH A 447 O HOH A 500 1.92 REMARK 500 O HOH A 436 O HOH A 522 2.08 REMARK 500 O HOH A 519 O HOH A 528 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 446 O HOH A 523 2655 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 47.89 -96.16 REMARK 500 ILE A 47 -75.66 -122.97 REMARK 500 PRO A 52 90.17 -69.09 REMARK 500 CYS A 119 -104.46 103.61 REMARK 500 VAL A 132 -42.46 -137.59 REMARK 500 GLN A 187 73.30 49.78 REMARK 500 HIS A 195 -49.27 73.59 REMARK 500 TRP A 219 35.42 -98.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 548 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 6.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 HIS A 10 NE2 109.6 REMARK 620 3 ASP A 41 OD2 89.1 108.4 REMARK 620 4 HIS A 197 NE2 87.7 86.9 164.5 REMARK 620 5 HOH A 411 O 104.4 146.0 71.8 94.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASN A 79 OD1 107.4 REMARK 620 3 HIS A 114 NE2 91.4 91.6 REMARK 620 4 HIS A 195 ND1 167.6 83.2 94.8 REMARK 620 5 HOH A 411 O 72.6 137.7 130.5 95.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 DBREF 5WLY A 1 240 UNP Q0P6L0 Q0P6L0_ECOLX 1 240 SEQADV 5WLY ALA A 14 UNP Q0P6L0 GLU 14 ENGINEERED MUTATION SEQADV 5WLY ALA A 15 UNP Q0P6L0 GLU 15 ENGINEERED MUTATION SEQADV 5WLY HIS A 141 UNP Q0P6L0 PHE 141 ENGINEERED MUTATION SEQADV 5WLY SER A 142 UNP Q0P6L0 LEU 142 ENGINEERED MUTATION SEQADV 5WLY SER A 146 UNP Q0P6L0 LEU 146 ENGINEERED MUTATION SEQADV 5WLY HIS A 147 UNP Q0P6L0 PHE 147 ENGINEERED MUTATION SEQADV 5WLY THR A 161 UNP Q0P6L0 LYS 161 ENGINEERED MUTATION SEQADV 5WLY ALA A 162 UNP Q0P6L0 GLU 162 ENGINEERED MUTATION SEQADV 5WLY LEU A 241 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY GLU A 242 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 243 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 244 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 245 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 246 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 247 UNP Q0P6L0 EXPRESSION TAG SEQADV 5WLY HIS A 248 UNP Q0P6L0 EXPRESSION TAG SEQRES 1 A 248 MET ALA THR LEU PHE ILE ALA ASP LEU HIS LEU CYS VAL SEQRES 2 A 248 ALA ALA PRO ALA ILE THR ALA GLY PHE LEU ARG PHE LEU SEQRES 3 A 248 ALA GLY GLU ALA ARG LYS ALA ASP ALA LEU TYR ILE LEU SEQRES 4 A 248 GLY ASP LEU PHE GLU ALA TRP ILE GLY ASP ASP ASP PRO SEQRES 5 A 248 ASN PRO LEU HIS ARG LYS MET ALA ALA ALA ILE LYS ALA SEQRES 6 A 248 VAL SER ASP SER GLY VAL PRO CYS TYR PHE ILE HIS GLY SEQRES 7 A 248 ASN ARG ASP PHE LEU LEU GLY LYS ARG PHE ALA ARG GLU SEQRES 8 A 248 SER GLY MET THR LEU LEU PRO GLU GLU LYS VAL LEU GLU SEQRES 9 A 248 LEU TYR GLY ARG ARG VAL LEU ILE MET HIS GLY ASP THR SEQRES 10 A 248 LEU CYS THR ASP ASP ALA GLY TYR GLN ALA PHE ARG ALA SEQRES 11 A 248 LYS VAL HIS LYS PRO TRP LEU GLN THR LEU HIS SER ALA SEQRES 12 A 248 LEU PRO SER HIS VAL ARG LYS ARG ILE ALA ALA ARG MET SEQRES 13 A 248 ARG ALA ASN SER THR ALA ALA ASN SER SER LYS SER LEU SEQRES 14 A 248 ALA ILE MET ASP VAL ASN GLN ASN ALA VAL VAL SER ALA SEQRES 15 A 248 MET GLU LYS HIS GLN VAL GLN TRP LEU ILE HIS GLY HIS SEQRES 16 A 248 THR HIS ARG PRO ALA VAL HIS GLU LEU ILE ALA ASN GLN SEQRES 17 A 248 GLN PRO ALA PHE ARG VAL VAL LEU GLY ALA TRP HIS THR SEQRES 18 A 248 GLU GLY SER MET VAL LYS VAL THR ALA ASP ASP VAL GLU SEQRES 19 A 248 LEU ILE HIS PHE PRO PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS HET MN A 301 1 HET MN A 302 1 HET CL A 303 1 HET FMT A 304 4 HET EDO A 305 4 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 CL CL 1- FORMUL 5 FMT C H2 O2 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *149(H2 O) HELIX 1 AA1 ALA A 15 GLY A 28 1 14 HELIX 2 AA2 GLU A 29 ALA A 33 5 5 HELIX 3 AA3 ASN A 53 SER A 69 1 17 HELIX 4 AA4 GLY A 85 GLY A 93 1 9 HELIX 5 AA5 GLY A 115 CYS A 119 5 5 HELIX 6 AA6 LYS A 134 SER A 142 1 9 HELIX 7 AA7 PRO A 145 THR A 161 1 17 HELIX 8 AA8 ASN A 175 HIS A 186 1 12 SHEET 1 AA1 6 MET A 94 LEU A 96 0 SHEET 2 AA1 6 CYS A 73 PHE A 75 1 N PHE A 75 O THR A 95 SHEET 3 AA1 6 ALA A 35 ILE A 38 1 N ILE A 38 O TYR A 74 SHEET 4 AA1 6 THR A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLY A 223 VAL A 228 -1 O VAL A 228 N THR A 3 SHEET 6 AA1 6 VAL A 233 PHE A 238 -1 O ILE A 236 N MET A 225 SHEET 1 AA2 5 LYS A 101 LEU A 105 0 SHEET 2 AA2 5 ARG A 108 ILE A 112 -1 O VAL A 110 N LEU A 103 SHEET 3 AA2 5 TRP A 190 HIS A 193 1 O TRP A 190 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O VAL A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ALA A 206 -1 N ALA A 200 O VAL A 215 LINK OD1 ASP A 8 MN MN A 302 1555 1555 2.06 LINK NE2 HIS A 10 MN MN A 302 1555 1555 2.20 LINK OD2 ASP A 41 MN MN A 301 1555 1555 2.12 LINK OD2 ASP A 41 MN MN A 302 1555 1555 2.31 LINK OD1 ASN A 79 MN MN A 301 1555 1555 2.07 LINK NE2 HIS A 114 MN MN A 301 1555 1555 2.13 LINK ND1 HIS A 195 MN MN A 301 1555 1555 2.23 LINK NE2 HIS A 197 MN MN A 302 1555 1555 2.17 LINK MN MN A 301 O HOH A 411 1555 1555 2.06 LINK MN MN A 302 O HOH A 411 1555 1555 1.87 SITE 1 AC1 6 ASP A 41 ASN A 79 HIS A 114 HIS A 195 SITE 2 AC1 6 MN A 302 HOH A 411 SITE 1 AC2 6 ASP A 8 HIS A 10 ASP A 41 HIS A 197 SITE 2 AC2 6 MN A 301 HOH A 411 SITE 1 AC3 4 ASN A 79 ARG A 80 ARG A 155 HOH A 429 SITE 1 AC4 3 ASN A 53 HOH A 401 HOH A 427 CRYST1 57.012 62.064 66.047 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015141 0.00000