HEADER LIGASE 28-JUL-17 5WM2 TITLE CRYSTAL STRUCTURE OF CAHJ IN COMPLEX WITH SALICYLIC ACID AND AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SALICYLATE-AMP LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GANDOCAENSIS; SOURCE 3 ORGANISM_TAXID: 1649596; SOURCE 4 GENE: CAHJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LIGASE, ADENYLATION DOMAIN, PEPTIDE SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.SIKKEMA,J.L.SMITH REVDAT 5 04-OCT-23 5WM2 1 REMARK REVDAT 4 25-DEC-19 5WM2 1 REMARK REVDAT 3 29-AUG-18 5WM2 1 JRNL REVDAT 2 04-JUL-18 5WM2 1 JRNL REVDAT 1 23-MAY-18 5WM2 0 JRNL AUTH A.TRIPATHI,S.R.PARK,A.P.SIKKEMA,H.J.CHO,J.WU,B.LEE,C.XI, JRNL AUTH 2 J.L.SMITH,D.H.SHERMAN JRNL TITL A DEFINED AND FLEXIBLE POCKET EXPLAINS ARYL SUBSTRATE JRNL TITL 2 PROMISCUITY OF THE CAHUITAMYCIN STARTER UNIT-ACTIVATING JRNL TITL 3 ENZYME CAHJ. JRNL REF CHEMBIOCHEM V. 19 1595 2018 JRNL REFN ESSN 1439-7633 JRNL PMID 29742306 JRNL DOI 10.1002/CBIC.201800233 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 54.790 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 109137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5986 - 4.2012 0.98 10434 181 0.1165 0.1600 REMARK 3 2 4.2012 - 3.3354 0.98 10418 176 0.1329 0.1773 REMARK 3 3 3.3354 - 2.9140 0.98 10443 170 0.1409 0.1766 REMARK 3 4 2.9140 - 2.6477 0.98 10424 190 0.1399 0.1585 REMARK 3 5 2.6477 - 2.4579 0.98 10388 169 0.1458 0.1929 REMARK 3 6 2.4579 - 2.3130 0.98 10466 170 0.1456 0.1797 REMARK 3 7 2.3130 - 2.1972 0.98 10412 174 0.1480 0.1738 REMARK 3 8 2.1972 - 2.1016 0.98 10454 178 0.1517 0.1736 REMARK 3 9 2.1016 - 2.0207 0.98 10469 168 0.1502 0.1413 REMARK 3 10 2.0207 - 1.9510 0.98 10396 164 0.1454 0.1568 REMARK 3 11 1.9510 - 1.8900 0.98 10434 178 0.1513 0.1560 REMARK 3 12 1.8900 - 1.8360 0.98 10416 174 0.1490 0.1872 REMARK 3 13 1.8360 - 1.7876 0.98 10406 184 0.1575 0.1996 REMARK 3 14 1.7876 - 1.7440 0.98 10432 170 0.1612 0.1585 REMARK 3 15 1.7440 - 1.7044 0.98 10402 174 0.1801 0.2388 REMARK 3 16 1.7044 - 1.6681 0.98 10430 166 0.1932 0.2071 REMARK 3 17 1.6681 - 1.6347 0.98 10529 182 0.2070 0.2239 REMARK 3 18 1.6347 - 1.6039 0.98 10379 180 0.2224 0.2673 REMARK 3 19 1.6039 - 1.5752 0.98 10420 176 0.2366 0.2782 REMARK 3 20 1.5752 - 1.5485 0.98 10398 181 0.2578 0.2632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4600 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4290 REMARK 3 ANGLE : 0.823 5877 REMARK 3 CHIRALITY : 0.052 666 REMARK 3 PLANARITY : 0.006 788 REMARK 3 DIHEDRAL : 10.399 3474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5414 41.2066 -13.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1797 REMARK 3 T33: 0.1086 T12: -0.0487 REMARK 3 T13: -0.0335 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.6701 L22: 1.1407 REMARK 3 L33: 2.9421 L12: -1.7430 REMARK 3 L13: -0.4166 L23: 0.3411 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.1179 S13: -0.1974 REMARK 3 S21: -0.1725 S22: -0.0159 S23: 0.1033 REMARK 3 S31: 0.2134 S32: -0.0866 S33: -0.0332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4762 33.3789 7.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1006 REMARK 3 T33: 0.1101 T12: 0.0159 REMARK 3 T13: 0.0058 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.4293 L22: 1.5827 REMARK 3 L33: 1.7472 L12: 0.8916 REMARK 3 L13: 0.2010 L23: 0.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0275 S13: -0.2412 REMARK 3 S21: 0.0239 S22: 0.0254 S23: -0.0740 REMARK 3 S31: 0.0918 S32: 0.0493 S33: -0.0024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9224 38.6981 12.1059 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1556 REMARK 3 T33: 0.1121 T12: -0.0393 REMARK 3 T13: 0.0105 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6785 L22: 0.5892 REMARK 3 L33: 1.2164 L12: -0.1167 REMARK 3 L13: -0.2174 L23: -0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.0346 S13: -0.0809 REMARK 3 S21: -0.0113 S22: 0.0103 S23: 0.0235 REMARK 3 S31: 0.1203 S32: -0.0977 S33: 0.0286 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6239 55.0565 6.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1341 REMARK 3 T33: 0.0696 T12: -0.0073 REMARK 3 T13: 0.0036 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4038 L22: 0.7686 REMARK 3 L33: 0.6147 L12: 0.0847 REMARK 3 L13: 0.0611 L23: 0.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.0068 S13: -0.0239 REMARK 3 S21: 0.0214 S22: 0.0056 S23: -0.0478 REMARK 3 S31: 0.0142 S32: 0.0108 S33: -0.0027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9260 61.6018 -7.8814 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1686 REMARK 3 T33: 0.0732 T12: -0.0020 REMARK 3 T13: -0.0153 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2513 L22: 0.9286 REMARK 3 L33: 0.5421 L12: 0.5354 REMARK 3 L13: 0.0760 L23: 0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.1150 S13: 0.0809 REMARK 3 S21: -0.0970 S22: 0.0403 S23: 0.1310 REMARK 3 S31: -0.0235 S32: -0.1116 S33: -0.0027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 459 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4210 64.4533 16.5907 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1760 REMARK 3 T33: 0.1050 T12: 0.0002 REMARK 3 T13: 0.0131 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.2605 L22: 1.1645 REMARK 3 L33: 0.7912 L12: 0.1453 REMARK 3 L13: -0.1090 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0641 S13: 0.0548 REMARK 3 S21: 0.0726 S22: 0.0029 S23: 0.1579 REMARK 3 S31: -0.0065 S32: -0.1049 S33: -0.0244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 519 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2202 71.4077 10.7323 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2330 REMARK 3 T33: 0.1847 T12: 0.0040 REMARK 3 T13: -0.0126 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.5169 L22: 2.8737 REMARK 3 L33: 2.0752 L12: 0.0051 REMARK 3 L13: -0.1590 L23: -0.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: 0.2097 S13: 0.2780 REMARK 3 S21: -0.1605 S22: 0.0460 S23: 0.2683 REMARK 3 S31: -0.2972 S32: -0.2126 S33: -0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 45.215 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.01 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.71 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.5, 1.7 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.45867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.22933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.22933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.45867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 555 REMARK 465 LEU A 556 REMARK 465 ARG A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 GLY A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 LYS A 546 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 180 O HOH A 701 1.96 REMARK 500 O HOH A 701 O HOH A 948 1.97 REMARK 500 O HOH A 967 O HOH A 979 1.99 REMARK 500 O HOH A 800 O HOH A 853 2.01 REMARK 500 O HOH A 1007 O HOH A 1092 2.10 REMARK 500 O HOH A 781 O HOH A 1059 2.10 REMARK 500 OD2 ASP A 154 O HOH A 702 2.11 REMARK 500 O HOH A 1008 O HOH A 1127 2.12 REMARK 500 O HOH A 917 O HOH A 1077 2.13 REMARK 500 O HOH A 805 O HOH A 1161 2.13 REMARK 500 O HOH A 1166 O HOH A 1175 2.14 REMARK 500 O HOH A 1050 O HOH A 1114 2.14 REMARK 500 O HOH A 1215 O HOH A 1218 2.17 REMARK 500 O HOH A 931 O HOH A 1026 2.17 REMARK 500 O HOH A 766 O HOH A 1074 2.18 REMARK 500 O HOH A 1085 O HOH A 1136 2.19 REMARK 500 O HOH A 1193 O HOH A 1208 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1071 O HOH A 1083 3565 2.01 REMARK 500 O HOH A 1214 O HOH A 1224 6555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 102.99 -40.61 REMARK 500 ARG A 131 -162.87 -124.31 REMARK 500 ASP A 151 -72.54 -78.59 REMARK 500 ALA A 182 -130.93 58.22 REMARK 500 THR A 215 -167.55 -107.02 REMARK 500 ASP A 242 -159.40 -153.78 REMARK 500 LEU A 357 122.93 -33.66 REMARK 500 TYR A 408 17.61 -143.24 REMARK 500 THR A 538 -171.83 -68.28 REMARK 500 SER A 539 56.59 -98.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1206 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1207 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1208 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1209 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1212 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1213 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1214 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1215 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A1217 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A1218 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A1220 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A1221 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A1222 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A1223 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A1224 DISTANCE = 7.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 605 DBREF1 5WM2 A 21 564 UNP A0A140DJY3_9ACTN DBREF2 5WM2 A A0A140DJY3 1 544 SEQADV 5WM2 MET A 1 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 GLY A 2 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 SER A 3 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 SER A 4 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 5 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 6 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 7 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 8 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 9 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 10 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 SER A 11 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 SER A 12 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 GLY A 13 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 LEU A 14 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 VAL A 15 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 PRO A 16 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 ARG A 17 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 GLY A 18 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 SER A 19 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM2 HIS A 20 UNP A0A140DJY EXPRESSION TAG SEQRES 1 A 564 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 564 LEU VAL PRO ARG GLY SER HIS MET LEU ASP GLY TRP VAL SEQRES 3 A 564 PRO TRP PRO GLU SER PHE ALA ARG ARG TYR ARG ALA ALA SEQRES 4 A 564 GLY TYR TRP GLU GLY ARG PRO LEU ASP ARG LEU LEU ARG SEQRES 5 A 564 GLU ARG ALA ALA ALA ASP PRO ASP ARG ILE ALA LEU VAL SEQRES 6 A 564 ASP ALA ALA GLY ASP ARG TRP THR TYR ALA GLU LEU ASP SEQRES 7 A 564 ARG HIS ALA ASP ARG GLN ALA ALA GLY LEU ARG ARG LEU SEQRES 8 A 564 GLY ILE GLY ALA GLY ASP ARG VAL VAL VAL GLN LEU PRO SEQRES 9 A 564 ASN THR ASP ALA PHE VAL VAL LEU PHE PHE ALA LEU LEU SEQRES 10 A 564 ARG ALA GLY ALA VAL PRO VAL LEU THR LEU PRO ALA HIS SEQRES 11 A 564 ARG GLU SER GLU ILE VAL HIS VAL ALA GLU THR ALA GLY SEQRES 12 A 564 ALA THR ALA TYR VAL ILE PRO ASP VAL LEU ASP GLY PHE SEQRES 13 A 564 ASP HIS ARG ALA LEU ALA ARG ALA ALA ARG LYS ALA VAL SEQRES 14 A 564 PRO SER ILE GLU HIS VAL LEU VAL ALA GLY GLU ALA ALA SEQRES 15 A 564 GLU PHE THR ALA LEU ALA ASP VAL ASP ALA ALA PRO VAL SEQRES 16 A 564 PRO LEU ALA GLU PRO ASP PRO GLY ASP VAL ALA LEU LEU SEQRES 17 A 564 LEU LEU SER GLY GLY THR THR GLY LYS PRO LYS LEU ILE SEQRES 18 A 564 PRO ARG THR HIS ASP ASP TYR THR TYR ASN VAL ARG ALA SEQRES 19 A 564 SER ALA GLU VAL CYS GLY PHE ASP SER ASP THR VAL TYR SEQRES 20 A 564 LEU VAL VAL LEU PRO THR ALA HIS ASN PHE ALA LEU ALA SEQRES 21 A 564 CYS PRO GLY LEU LEU GLY THR LEU MET VAL GLY GLY THR SEQRES 22 A 564 VAL VAL LEU ALA PRO THR PRO SER PRO GLU ASP ALA PHE SEQRES 23 A 564 GLU LEU ILE GLU ARG GLU LYS VAL THR ALA THR ALA VAL SEQRES 24 A 564 VAL PRO PRO VAL ALA LEU LEU TRP LEU ASP ALA VAL GLU SEQRES 25 A 564 TRP GLU ASP ALA ASP LEU SER SER LEU ARG LEU LEU GLN SEQRES 26 A 564 VAL GLY GLY SER LYS LEU GLY ALA GLU PRO ALA ALA ARG SEQRES 27 A 564 VAL ARG PRO ALA LEU GLY CYS THR LEU GLN GLN VAL PHE SEQRES 28 A 564 GLY MET ALA GLU GLY LEU LEU ASN TYR THR ARG LEU ASP SEQRES 29 A 564 ASP PRO SER ASP LEU VAL ILE GLN THR GLN GLY ARG PRO SEQRES 30 A 564 LEU SER PRO ASP ASP GLU ILE ARG VAL VAL ASP GLU ASP SEQRES 31 A 564 GLY ARG ASP VAL ALA PRO GLY GLU THR GLY GLU LEU LEU SEQRES 32 A 564 THR ARG GLY PRO TYR THR LEU ARG GLY TYR TYR ARG ALA SEQRES 33 A 564 PRO GLU HIS ASN ALA ARG THR PHE SER ASP ASP GLY PHE SEQRES 34 A 564 TYR ARG THR GLY ASP LEU VAL ARG VAL LEU PRO SER GLY SEQRES 35 A 564 HIS LEU VAL VAL GLU GLY ARG ALA LYS ASP GLN ILE ASN SEQRES 36 A 564 ARG GLY GLY ASP LYS ILE SER ALA GLU GLU LEU GLU ASN SEQRES 37 A 564 HIS ILE MET ALA HIS PRO GLY VAL HIS ASP ALA ALA VAL SEQRES 38 A 564 VAL GLY MET PRO ASP ALA THR MET GLY GLU ARG THR CYS SEQRES 39 A 564 ALA CYS LEU VAL PRO ARG ALA GLY ARG SER ALA PRO ALA SEQRES 40 A 564 GLN ARG GLU LEU ALA ALA PHE LEU THR ASP ARG GLY VAL SEQRES 41 A 564 ALA ALA TYR LYS LEU PRO ASP ARG VAL GLU VAL MET ASP SEQRES 42 A 564 ALA PHE PRO ARG THR SER VAL GLY LYS THR ASP LYS LYS SEQRES 43 A 564 GLU LEU GLY ARG ARG ILE ALA GLY GLN LEU ARG THR GLU SEQRES 44 A 564 ASP GLY GLY VAL HIS HET SAL A 601 10 HET AMP A 602 23 HET GOL A 603 6 HET GOL A 604 6 HET ACT A 605 4 HETNAM SAL 2-HYDROXYBENZOIC ACID HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN SAL SALICYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAL C7 H6 O3 FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *524(H2 O) HELIX 1 AA1 PRO A 29 ALA A 39 1 11 HELIX 2 AA2 ASP A 48 ASP A 58 1 11 HELIX 3 AA3 TYR A 74 LEU A 91 1 18 HELIX 4 AA4 THR A 106 GLY A 120 1 15 HELIX 5 AA5 ARG A 131 GLY A 143 1 13 HELIX 6 AA6 HIS A 158 VAL A 169 1 12 HELIX 7 AA7 ALA A 188 VAL A 190 5 3 HELIX 8 AA8 HIS A 225 CYS A 239 1 15 HELIX 9 AA9 HIS A 255 CYS A 261 1 7 HELIX 10 AB1 PRO A 262 GLY A 271 1 10 HELIX 11 AB2 SER A 281 LYS A 293 1 13 HELIX 12 AB3 VAL A 300 VAL A 311 1 12 HELIX 13 AB4 GLY A 332 ARG A 338 1 7 HELIX 14 AB5 ARG A 338 GLY A 344 1 7 HELIX 15 AB6 PRO A 366 THR A 373 1 8 HELIX 16 AB7 ALA A 416 PHE A 424 1 9 HELIX 17 AB8 ALA A 463 ALA A 472 1 10 HELIX 18 AB9 ALA A 507 GLY A 519 1 13 HELIX 19 AC1 ALA A 521 LEU A 525 5 5 HELIX 20 AC2 ASP A 544 GLY A 554 1 11 SHEET 1 AA1 9 ARG A 71 THR A 73 0 SHEET 2 AA1 9 ILE A 62 VAL A 65 -1 N ALA A 63 O TRP A 72 SHEET 3 AA1 9 THR A 273 LEU A 276 1 O VAL A 274 N VAL A 65 SHEET 4 AA1 9 VAL A 246 VAL A 249 1 N VAL A 249 O VAL A 275 SHEET 5 AA1 9 ALA A 296 VAL A 299 1 O ALA A 296 N LEU A 248 SHEET 6 AA1 9 LEU A 323 GLY A 327 1 O GLN A 325 N THR A 297 SHEET 7 AA1 9 THR A 346 MET A 353 1 O THR A 346 N LEU A 324 SHEET 8 AA1 9 GLY A 356 TYR A 360 -1 O ASN A 359 N PHE A 351 SHEET 9 AA1 9 ARG A 376 PRO A 377 -1 O ARG A 376 N TYR A 360 SHEET 1 AA2 5 VAL A 122 LEU A 125 0 SHEET 2 AA2 5 ARG A 98 VAL A 101 1 N VAL A 99 O VAL A 124 SHEET 3 AA2 5 ALA A 146 PRO A 150 1 O VAL A 148 N VAL A 100 SHEET 4 AA2 5 HIS A 174 ALA A 178 1 O ALA A 178 N ILE A 149 SHEET 5 AA2 5 THR A 185 ALA A 186 1 O THR A 185 N VAL A 177 SHEET 1 AA3 2 VAL A 152 LEU A 153 0 SHEET 2 AA3 2 PHE A 156 ASP A 157 -1 O PHE A 156 N LEU A 153 SHEET 1 AA4 2 VAL A 205 SER A 211 0 SHEET 2 AA4 2 LYS A 219 THR A 224 -1 O ARG A 223 N ALA A 206 SHEET 1 AA5 4 GLU A 383 VAL A 387 0 SHEET 2 AA5 4 GLY A 400 ARG A 405 -1 O ARG A 405 N GLU A 383 SHEET 3 AA5 4 TYR A 430 VAL A 438 -1 O TYR A 430 N THR A 404 SHEET 4 AA5 4 LEU A 444 ARG A 449 -1 O GLU A 447 N LEU A 435 SHEET 1 AA6 2 GLN A 453 ARG A 456 0 SHEET 2 AA6 2 ASP A 459 SER A 462 -1 O ASP A 459 N ARG A 456 SHEET 1 AA7 3 VAL A 476 ASP A 486 0 SHEET 2 AA7 3 GLY A 490 PRO A 499 -1 O CYS A 494 N VAL A 482 SHEET 3 AA7 3 ARG A 528 VAL A 531 1 O GLU A 530 N LEU A 497 CISPEP 1 CYS A 261 PRO A 262 0 -8.39 CISPEP 2 VAL A 540 GLY A 541 0 4.29 SITE 1 AC1 10 ASN A 256 PHE A 257 GLY A 328 VAL A 350 SITE 2 AC1 10 GLY A 352 MET A 353 ALA A 354 LEU A 358 SITE 3 AC1 10 AMP A 602 HOH A 726 SITE 1 AC2 18 GLY A 328 SER A 329 LYS A 330 VAL A 350 SITE 2 AC2 18 PHE A 351 GLY A 352 MET A 353 ALA A 354 SITE 3 AC2 18 GLU A 355 ASP A 434 LYS A 451 LYS A 460 SITE 4 AC2 18 SAL A 601 HOH A 709 HOH A 721 HOH A 726 SITE 5 AC2 18 HOH A 826 HOH A 834 SITE 1 AC3 9 ALA A 336 ALA A 337 VAL A 339 ARG A 340 SITE 2 AC3 9 THR A 346 LEU A 347 HOH A 780 HOH A 786 SITE 3 AC3 9 HOH A 811 SITE 1 AC4 6 LEU A 125 LEU A 209 LEU A 210 ALA A 254 SITE 2 AC4 6 ASN A 256 HOH A 787 SITE 1 AC5 8 CYS A 239 GLY A 240 PHE A 241 THR A 245 SITE 2 AC5 8 THR A 295 ARG A 322 ARG A 509 HOH A 719 CRYST1 121.872 121.872 87.688 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008205 0.004737 0.000000 0.00000 SCALE2 0.000000 0.009475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011404 0.00000