HEADER LIGASE 28-JUL-17 5WM3 TITLE CRYSTAL STRUCTURE OF CAHJ IN COMPLEX WITH SALICYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SALICYLATE-AMP LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GANDOCAENSIS; SOURCE 3 ORGANISM_TAXID: 1649596; SOURCE 4 GENE: CAHJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LIGASE, ADENYLATION DOMAIN, PEPTIDE SYNTHETASE. EXPDTA X-RAY DIFFRACTION AUTHOR A.P.SIKKEMA,J.L.SMITH REVDAT 5 04-OCT-23 5WM3 1 LINK REVDAT 4 25-DEC-19 5WM3 1 REMARK REVDAT 3 29-AUG-18 5WM3 1 JRNL REVDAT 2 04-JUL-18 5WM3 1 JRNL REVDAT 1 23-MAY-18 5WM3 0 JRNL AUTH A.TRIPATHI,S.R.PARK,A.P.SIKKEMA,H.J.CHO,J.WU,B.LEE,C.XI, JRNL AUTH 2 J.L.SMITH,D.H.SHERMAN JRNL TITL A DEFINED AND FLEXIBLE POCKET EXPLAINS ARYL SUBSTRATE JRNL TITL 2 PROMISCUITY OF THE CAHUITAMYCIN STARTER UNIT-ACTIVATING JRNL TITL 3 ENZYME CAHJ. JRNL REF CHEMBIOCHEM V. 19 1595 2018 JRNL REFN ESSN 1439-7633 JRNL PMID 29742306 JRNL DOI 10.1002/CBIC.201800233 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 52.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 85969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7592 - 4.4789 0.94 8358 151 0.1320 0.1796 REMARK 3 2 4.4789 - 3.5561 0.92 8166 131 0.1136 0.1747 REMARK 3 3 3.5561 - 3.1069 0.95 8385 137 0.1399 0.1738 REMARK 3 4 3.1069 - 2.8229 0.96 8479 150 0.1613 0.2131 REMARK 3 5 2.8229 - 2.6206 0.94 8369 143 0.1691 0.1905 REMARK 3 6 2.6206 - 2.4662 0.93 8214 137 0.1848 0.2199 REMARK 3 7 2.4662 - 2.3427 0.96 8504 139 0.1875 0.1927 REMARK 3 8 2.3427 - 2.2407 0.96 8514 142 0.1915 0.2143 REMARK 3 9 2.2407 - 2.1545 0.95 8367 137 0.1951 0.2141 REMARK 3 10 2.1545 - 2.0801 0.94 8400 147 0.2014 0.2109 REMARK 3 11 2.0801 - 2.0151 0.92 8170 128 0.2108 0.2040 REMARK 3 12 2.0151 - 1.9575 0.94 8329 136 0.2179 0.2548 REMARK 3 13 1.9575 - 1.9060 0.95 8421 143 0.2235 0.2369 REMARK 3 14 1.9060 - 1.8595 0.95 8434 140 0.2417 0.2510 REMARK 3 15 1.8595 - 1.8172 0.95 8390 150 0.2531 0.2618 REMARK 3 16 1.8172 - 1.7785 0.93 8168 134 0.2736 0.3010 REMARK 3 17 1.7785 - 1.7430 0.93 8256 139 0.2951 0.2672 REMARK 3 18 1.7430 - 1.7101 0.92 8154 131 0.3121 0.3064 REMARK 3 19 1.7101 - 1.6795 0.92 8108 130 0.3392 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0400 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4208 REMARK 3 ANGLE : 0.888 5743 REMARK 3 CHIRALITY : 0.052 648 REMARK 3 PLANARITY : 0.005 766 REMARK 3 DIHEDRAL : 11.029 3429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7636 41.3972 -13.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.2290 REMARK 3 T33: 0.1803 T12: -0.0429 REMARK 3 T13: -0.0300 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 4.0430 L22: 1.5638 REMARK 3 L33: 3.4788 L12: -1.4809 REMARK 3 L13: -0.6463 L23: -0.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: 0.1177 S13: -0.3532 REMARK 3 S21: -0.1946 S22: 0.0179 S23: 0.1383 REMARK 3 S31: 0.1689 S32: -0.1838 S33: -0.0202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9839 33.5718 8.1251 REMARK 3 T TENSOR REMARK 3 T11: 0.2084 T22: 0.1553 REMARK 3 T33: 0.1889 T12: 0.0227 REMARK 3 T13: 0.0005 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.7238 L22: 1.7715 REMARK 3 L33: 1.6076 L12: 1.1199 REMARK 3 L13: 0.3653 L23: 0.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.0142 S13: -0.3121 REMARK 3 S21: 0.0997 S22: 0.0160 S23: -0.0836 REMARK 3 S31: 0.1307 S32: 0.0339 S33: 0.0170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3586 39.3837 14.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1977 REMARK 3 T33: 0.1589 T12: -0.0385 REMARK 3 T13: 0.0030 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.3414 L22: 1.0732 REMARK 3 L33: 1.8851 L12: -0.4346 REMARK 3 L13: -0.7393 L23: -0.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.0199 S13: -0.0793 REMARK 3 S21: 0.0243 S22: 0.0084 S23: 0.0132 REMARK 3 S31: 0.1068 S32: -0.1280 S33: 0.0259 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3533 44.2015 0.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1704 REMARK 3 T33: 0.1321 T12: -0.0115 REMARK 3 T13: 0.0082 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.0911 L22: 0.9274 REMARK 3 L33: 1.4344 L12: 0.0348 REMARK 3 L13: 0.0056 L23: 0.0564 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0094 S13: -0.0501 REMARK 3 S21: -0.0299 S22: -0.0008 S23: 0.0518 REMARK 3 S31: 0.1083 S32: -0.0912 S33: 0.0235 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0703 58.2991 8.9186 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.1902 REMARK 3 T33: 0.1273 T12: -0.0016 REMARK 3 T13: 0.0054 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5021 L22: 1.1107 REMARK 3 L33: 0.8000 L12: 0.0393 REMARK 3 L13: 0.1081 L23: 0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0158 S13: 0.0090 REMARK 3 S21: 0.0577 S22: 0.0342 S23: -0.0743 REMARK 3 S31: -0.0141 S32: 0.0235 S33: -0.0188 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3432 59.9667 -9.4231 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.2279 REMARK 3 T33: 0.1081 T12: 0.0001 REMARK 3 T13: -0.0190 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.4993 L22: 1.5610 REMARK 3 L33: 0.4548 L12: 1.2096 REMARK 3 L13: 0.2390 L23: 0.2241 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0824 S13: 0.0991 REMARK 3 S21: -0.1242 S22: -0.0095 S23: 0.1748 REMARK 3 S31: -0.0215 S32: -0.1102 S33: 0.0135 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5132 66.3028 7.3825 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1898 REMARK 3 T33: 0.1417 T12: 0.0031 REMARK 3 T13: -0.0049 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.3640 L22: 0.3168 REMARK 3 L33: 1.3310 L12: 0.1631 REMARK 3 L13: -1.2795 L23: -0.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.0603 S13: 0.1131 REMARK 3 S21: 0.0229 S22: 0.0290 S23: 0.0898 REMARK 3 S31: -0.0240 S32: -0.1333 S33: -0.0469 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 500 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2544 68.6001 15.5609 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.2289 REMARK 3 T33: 0.2025 T12: -0.0121 REMARK 3 T13: -0.0285 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.1701 L22: 2.8884 REMARK 3 L33: 1.9812 L12: 0.2360 REMARK 3 L13: -0.8001 L23: -0.2484 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.1178 S13: 0.3481 REMARK 3 S21: -0.1112 S22: 0.1306 S23: 0.2793 REMARK 3 S31: -0.1925 S32: -0.1800 S33: -0.0832 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.679 REMARK 200 RESOLUTION RANGE LOW (A) : 45.418 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.386 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.32 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5WM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.5, 1.7 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.72800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.36400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.36400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.72800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1492 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1529 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 556 REMARK 465 ARG A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 GLY A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 LYS A 546 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 944 O HOH A 1224 2.04 REMARK 500 O HOH A 1332 O HOH A 1483 2.13 REMARK 500 O HOH A 1144 O HOH A 1484 2.15 REMARK 500 O HOH A 1518 O HOH A 1558 2.15 REMARK 500 ND1 HIS A 174 O HOH A 701 2.16 REMARK 500 O HOH A 1320 O HOH A 1392 2.16 REMARK 500 O HOH A 752 O HOH A 1149 2.17 REMARK 500 O HOH A 1179 O HOH A 1352 2.18 REMARK 500 O HOH A 1313 O HOH A 1366 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1057 O HOH A 1277 3565 2.04 REMARK 500 O HOH A 1232 O HOH A 1360 2664 2.05 REMARK 500 O HOH A 1232 O HOH A 1249 2664 2.16 REMARK 500 O HOH A 1068 O HOH A 1364 6554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 74.65 15.02 REMARK 500 ARG A 131 -160.89 -123.91 REMARK 500 ASP A 151 -73.19 -78.53 REMARK 500 ALA A 182 -127.30 58.50 REMARK 500 PHE A 184 -159.07 -95.76 REMARK 500 LEU A 357 123.82 -32.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1562 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1563 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1564 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1565 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 319 O REMARK 620 2 LEU A 321 O 95.5 REMARK 620 3 GLY A 344 O 169.0 95.5 REMARK 620 4 HOH A 764 O 92.0 94.8 86.0 REMARK 620 5 HOH A1198 O 95.4 82.6 87.1 172.4 REMARK 620 6 HOH A1240 O 83.0 172.8 86.2 92.3 90.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B5V A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 607 DBREF1 5WM3 A 21 564 UNP A0A140DJY3_9ACTN DBREF2 5WM3 A A0A140DJY3 1 544 SEQADV 5WM3 MET A 1 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 GLY A 2 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 SER A 3 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 SER A 4 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 5 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 6 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 7 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 8 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 9 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 10 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 SER A 11 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 SER A 12 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 GLY A 13 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 LEU A 14 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 VAL A 15 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 PRO A 16 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 ARG A 17 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 GLY A 18 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 SER A 19 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM3 HIS A 20 UNP A0A140DJY EXPRESSION TAG SEQRES 1 A 564 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 564 LEU VAL PRO ARG GLY SER HIS MET LEU ASP GLY TRP VAL SEQRES 3 A 564 PRO TRP PRO GLU SER PHE ALA ARG ARG TYR ARG ALA ALA SEQRES 4 A 564 GLY TYR TRP GLU GLY ARG PRO LEU ASP ARG LEU LEU ARG SEQRES 5 A 564 GLU ARG ALA ALA ALA ASP PRO ASP ARG ILE ALA LEU VAL SEQRES 6 A 564 ASP ALA ALA GLY ASP ARG TRP THR TYR ALA GLU LEU ASP SEQRES 7 A 564 ARG HIS ALA ASP ARG GLN ALA ALA GLY LEU ARG ARG LEU SEQRES 8 A 564 GLY ILE GLY ALA GLY ASP ARG VAL VAL VAL GLN LEU PRO SEQRES 9 A 564 ASN THR ASP ALA PHE VAL VAL LEU PHE PHE ALA LEU LEU SEQRES 10 A 564 ARG ALA GLY ALA VAL PRO VAL LEU THR LEU PRO ALA HIS SEQRES 11 A 564 ARG GLU SER GLU ILE VAL HIS VAL ALA GLU THR ALA GLY SEQRES 12 A 564 ALA THR ALA TYR VAL ILE PRO ASP VAL LEU ASP GLY PHE SEQRES 13 A 564 ASP HIS ARG ALA LEU ALA ARG ALA ALA ARG LYS ALA VAL SEQRES 14 A 564 PRO SER ILE GLU HIS VAL LEU VAL ALA GLY GLU ALA ALA SEQRES 15 A 564 GLU PHE THR ALA LEU ALA ASP VAL ASP ALA ALA PRO VAL SEQRES 16 A 564 PRO LEU ALA GLU PRO ASP PRO GLY ASP VAL ALA LEU LEU SEQRES 17 A 564 LEU LEU SER GLY GLY THR THR GLY LYS PRO LYS LEU ILE SEQRES 18 A 564 PRO ARG THR HIS ASP ASP TYR THR TYR ASN VAL ARG ALA SEQRES 19 A 564 SER ALA GLU VAL CYS GLY PHE ASP SER ASP THR VAL TYR SEQRES 20 A 564 LEU VAL VAL LEU PRO THR ALA HIS ASN PHE ALA LEU ALA SEQRES 21 A 564 CYS PRO GLY LEU LEU GLY THR LEU MET VAL GLY GLY THR SEQRES 22 A 564 VAL VAL LEU ALA PRO THR PRO SER PRO GLU ASP ALA PHE SEQRES 23 A 564 GLU LEU ILE GLU ARG GLU LYS VAL THR ALA THR ALA VAL SEQRES 24 A 564 VAL PRO PRO VAL ALA LEU LEU TRP LEU ASP ALA VAL GLU SEQRES 25 A 564 TRP GLU ASP ALA ASP LEU SER SER LEU ARG LEU LEU GLN SEQRES 26 A 564 VAL GLY GLY SER LYS LEU GLY ALA GLU PRO ALA ALA ARG SEQRES 27 A 564 VAL ARG PRO ALA LEU GLY CYS THR LEU GLN GLN VAL PHE SEQRES 28 A 564 GLY MET ALA GLU GLY LEU LEU ASN TYR THR ARG LEU ASP SEQRES 29 A 564 ASP PRO SER ASP LEU VAL ILE GLN THR GLN GLY ARG PRO SEQRES 30 A 564 LEU SER PRO ASP ASP GLU ILE ARG VAL VAL ASP GLU ASP SEQRES 31 A 564 GLY ARG ASP VAL ALA PRO GLY GLU THR GLY GLU LEU LEU SEQRES 32 A 564 THR ARG GLY PRO TYR THR LEU ARG GLY TYR TYR ARG ALA SEQRES 33 A 564 PRO GLU HIS ASN ALA ARG THR PHE SER ASP ASP GLY PHE SEQRES 34 A 564 TYR ARG THR GLY ASP LEU VAL ARG VAL LEU PRO SER GLY SEQRES 35 A 564 HIS LEU VAL VAL GLU GLY ARG ALA LYS ASP GLN ILE ASN SEQRES 36 A 564 ARG GLY GLY ASP LYS ILE SER ALA GLU GLU LEU GLU ASN SEQRES 37 A 564 HIS ILE MET ALA HIS PRO GLY VAL HIS ASP ALA ALA VAL SEQRES 38 A 564 VAL GLY MET PRO ASP ALA THR MET GLY GLU ARG THR CYS SEQRES 39 A 564 ALA CYS LEU VAL PRO ARG ALA GLY ARG SER ALA PRO ALA SEQRES 40 A 564 GLN ARG GLU LEU ALA ALA PHE LEU THR ASP ARG GLY VAL SEQRES 41 A 564 ALA ALA TYR LYS LEU PRO ASP ARG VAL GLU VAL MET ASP SEQRES 42 A 564 ALA PHE PRO ARG THR SER VAL GLY LYS THR ASP LYS LYS SEQRES 43 A 564 GLU LEU GLY ARG ARG ILE ALA GLY GLN LEU ARG THR GLU SEQRES 44 A 564 ASP GLY GLY VAL HIS HET B5V A 601 32 HET MG A 602 1 HET ACT A 603 4 HET ACT A 604 4 HET ACT A 605 4 HET GOL A 606 6 HET GOL A 607 6 HETNAM B5V 9-(5-O-{(S)-HYDROXY[(2-HYDROXYBENZENE-1-CARBONYL) HETNAM 2 B5V OXY]PHOSPHORYL}-ALPHA-L-LYXOFURANOSYL)-9H-PURIN-6- HETNAM 3 B5V AMINE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 B5V C17 H18 N5 O9 P FORMUL 3 MG MG 2+ FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *865(H2 O) HELIX 1 AA1 PRO A 29 ALA A 39 1 11 HELIX 2 AA2 ASP A 48 ASP A 58 1 11 HELIX 3 AA3 TYR A 74 LEU A 91 1 18 HELIX 4 AA4 THR A 106 GLY A 120 1 15 HELIX 5 AA5 ARG A 131 GLY A 143 1 13 HELIX 6 AA6 HIS A 158 VAL A 169 1 12 HELIX 7 AA7 ALA A 188 VAL A 190 5 3 HELIX 8 AA8 HIS A 225 CYS A 239 1 15 HELIX 9 AA9 HIS A 255 CYS A 261 1 7 HELIX 10 AB1 PRO A 262 GLY A 271 1 10 HELIX 11 AB2 SER A 281 LYS A 293 1 13 HELIX 12 AB3 VAL A 300 VAL A 311 1 12 HELIX 13 AB4 GLY A 332 GLY A 344 1 13 HELIX 14 AB5 PRO A 366 THR A 373 1 8 HELIX 15 AB6 ALA A 416 PHE A 424 1 9 HELIX 16 AB7 ALA A 463 ALA A 472 1 10 HELIX 17 AB8 ALA A 507 GLY A 519 1 13 HELIX 18 AB9 ALA A 521 LEU A 525 5 5 HELIX 19 AC1 ASP A 544 ALA A 553 1 10 SHEET 1 AA1 9 ARG A 71 THR A 73 0 SHEET 2 AA1 9 ILE A 62 VAL A 65 -1 N LEU A 64 O TRP A 72 SHEET 3 AA1 9 THR A 273 LEU A 276 1 O VAL A 274 N VAL A 65 SHEET 4 AA1 9 VAL A 246 VAL A 249 1 N TYR A 247 O VAL A 275 SHEET 5 AA1 9 ALA A 296 VAL A 299 1 O ALA A 296 N LEU A 248 SHEET 6 AA1 9 LEU A 323 GLY A 327 1 O GLN A 325 N THR A 297 SHEET 7 AA1 9 THR A 346 MET A 353 1 O THR A 346 N LEU A 324 SHEET 8 AA1 9 GLY A 356 TYR A 360 -1 O ASN A 359 N PHE A 351 SHEET 9 AA1 9 ARG A 376 PRO A 377 -1 O ARG A 376 N TYR A 360 SHEET 1 AA2 7 THR A 185 ALA A 186 0 SHEET 2 AA2 7 HIS A 174 ALA A 178 1 N VAL A 177 O THR A 185 SHEET 3 AA2 7 ALA A 146 PRO A 150 1 N ILE A 149 O ALA A 178 SHEET 4 AA2 7 ARG A 98 VAL A 101 1 N VAL A 100 O VAL A 148 SHEET 5 AA2 7 VAL A 122 LEU A 125 1 O VAL A 124 N VAL A 99 SHEET 6 AA2 7 VAL A 205 LEU A 210 1 O LEU A 208 N PRO A 123 SHEET 7 AA2 7 LEU A 220 THR A 224 -1 O ARG A 223 N ALA A 206 SHEET 1 AA3 2 VAL A 152 LEU A 153 0 SHEET 2 AA3 2 PHE A 156 ASP A 157 -1 O PHE A 156 N LEU A 153 SHEET 1 AA4 4 GLU A 383 VAL A 387 0 SHEET 2 AA4 4 GLY A 400 ARG A 405 -1 O ARG A 405 N GLU A 383 SHEET 3 AA4 4 TYR A 430 VAL A 438 -1 O TYR A 430 N THR A 404 SHEET 4 AA4 4 LEU A 444 ARG A 449 -1 O GLU A 447 N LEU A 435 SHEET 1 AA5 2 GLN A 453 ARG A 456 0 SHEET 2 AA5 2 ASP A 459 SER A 462 -1 O ILE A 461 N ILE A 454 SHEET 1 AA6 3 VAL A 476 ASP A 486 0 SHEET 2 AA6 3 GLY A 490 PRO A 499 -1 O VAL A 498 N HIS A 477 SHEET 3 AA6 3 ARG A 528 VAL A 531 1 O ARG A 528 N ALA A 495 LINK O SER A 319 MG MG A 602 1555 1555 2.55 LINK O LEU A 321 MG MG A 602 1555 1555 2.35 LINK O GLY A 344 MG MG A 602 1555 1555 2.40 LINK MG MG A 602 O HOH A 764 1555 1555 2.38 LINK MG MG A 602 O HOH A1198 1555 1555 2.57 LINK MG MG A 602 O HOH A1240 1555 1555 2.54 CISPEP 1 CYS A 261 PRO A 262 0 -7.80 SITE 1 AC1 18 ASN A 256 PHE A 257 GLY A 327 GLY A 328 SITE 2 AC1 18 SER A 329 LYS A 330 VAL A 350 PHE A 351 SITE 3 AC1 18 GLY A 352 MET A 353 ALA A 354 ASP A 434 SITE 4 AC1 18 LYS A 451 LYS A 460 HOH A 703 HOH A 888 SITE 5 AC1 18 HOH A 942 HOH A1052 SITE 1 AC2 6 SER A 319 LEU A 321 GLY A 344 HOH A 764 SITE 2 AC2 6 HOH A1198 HOH A1240 SITE 1 AC3 4 GLU A 173 HIS A 174 VAL A 175 THR A 185 SITE 1 AC4 6 ALA A 416 PRO A 417 GLU A 418 HIS A 419 SITE 2 AC4 6 HOH A 809 HOH A 967 SITE 1 AC5 7 CYS A 239 PHE A 241 THR A 245 THR A 295 SITE 2 AC5 7 ARG A 322 ARG A 509 HOH A 704 SITE 1 AC6 10 PRO A 301 LYS A 330 GLY A 332 THR A 488 SITE 2 AC6 10 MET A 489 GLY A 490 HOH A 706 HOH A 708 SITE 3 AC6 10 HOH A 798 HOH A 908 SITE 1 AC7 8 ALA A 336 ALA A 337 VAL A 339 ARG A 340 SITE 2 AC7 8 LEU A 347 HOH A 760 HOH A 886 HOH A1001 CRYST1 122.413 122.413 88.092 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008169 0.004716 0.000000 0.00000 SCALE2 0.000000 0.009433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011352 0.00000