HEADER LIGASE 28-JUL-17 5WM5 TITLE CRYSTAL STRUCTURE OF CAHJ IN COMPLEX WITH 5-METHYLSALICYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SALICYLATE-AMP LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GANDOCAENSIS; SOURCE 3 ORGANISM_TAXID: 1649596; SOURCE 4 GENE: CAHJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LIGASE, ADENYLATION DOMAIN, PEPTIDE SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.SIKKEMA,J.L.SMITH REVDAT 5 04-OCT-23 5WM5 1 REMARK REVDAT 4 25-DEC-19 5WM5 1 REMARK REVDAT 3 29-AUG-18 5WM5 1 JRNL REVDAT 2 04-JUL-18 5WM5 1 JRNL REVDAT 1 23-MAY-18 5WM5 0 JRNL AUTH A.TRIPATHI,S.R.PARK,A.P.SIKKEMA,H.J.CHO,J.WU,B.LEE,C.XI, JRNL AUTH 2 J.L.SMITH,D.H.SHERMAN JRNL TITL A DEFINED AND FLEXIBLE POCKET EXPLAINS ARYL SUBSTRATE JRNL TITL 2 PROMISCUITY OF THE CAHUITAMYCIN STARTER UNIT-ACTIVATING JRNL TITL 3 ENZYME CAHJ. JRNL REF CHEMBIOCHEM V. 19 1595 2018 JRNL REFN ESSN 1439-7633 JRNL PMID 29742306 JRNL DOI 10.1002/CBIC.201800233 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 44.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 69218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.5072 - 4.3180 0.93 9005 162 0.1047 0.1637 REMARK 3 2 4.3180 - 3.4345 0.90 8733 144 0.0986 0.1678 REMARK 3 3 3.4345 - 3.0024 0.90 8640 144 0.1317 0.1684 REMARK 3 4 3.0024 - 2.7289 0.89 8625 162 0.1557 0.1848 REMARK 3 5 2.7289 - 2.5338 0.88 8493 145 0.1675 0.1984 REMARK 3 6 2.5338 - 2.3847 0.87 8407 137 0.1731 0.2317 REMARK 3 7 2.3847 - 2.2655 0.86 8322 137 0.1820 0.1759 REMARK 3 8 2.2655 - 2.1671 0.86 8319 136 0.1992 0.2298 REMARK 3 9 2.1671 - 2.0837 0.85 8135 144 0.2084 0.2309 REMARK 3 10 2.0837 - 2.0119 0.83 8108 129 0.2276 0.2434 REMARK 3 11 2.0119 - 1.9491 0.83 7973 119 0.2526 0.3184 REMARK 3 12 1.9491 - 1.8934 0.83 7968 133 0.2788 0.3187 REMARK 3 13 1.8934 - 1.8436 0.82 7958 130 0.3102 0.3079 REMARK 3 14 1.8436 - 1.7987 0.81 7802 131 0.3290 0.3774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.1200 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4169 REMARK 3 ANGLE : 0.925 5691 REMARK 3 CHIRALITY : 0.054 643 REMARK 3 PLANARITY : 0.005 758 REMARK 3 DIHEDRAL : 10.366 2489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5650 40.8969 -13.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.3341 T22: 0.3049 REMARK 3 T33: 0.1601 T12: -0.0775 REMARK 3 T13: -0.0467 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 3.1989 L22: 1.7933 REMARK 3 L33: 3.2507 L12: -0.8939 REMARK 3 L13: -0.6217 L23: -0.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.1817 S13: -0.2826 REMARK 3 S21: -0.2549 S22: 0.0474 S23: 0.1077 REMARK 3 S31: 0.4127 S32: -0.2451 S33: -0.0838 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5396 33.2306 7.9838 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.2163 REMARK 3 T33: 0.2019 T12: 0.0217 REMARK 3 T13: 0.0108 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.8181 L22: 1.5294 REMARK 3 L33: 1.6548 L12: 0.8596 REMARK 3 L13: 0.2088 L23: 0.1453 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.0120 S13: -0.3078 REMARK 3 S21: 0.0324 S22: 0.0452 S23: -0.0892 REMARK 3 S31: 0.2946 S32: 0.0653 S33: -0.0161 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1172 38.8467 14.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.3060 REMARK 3 T33: 0.1725 T12: -0.0675 REMARK 3 T13: 0.0053 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.4557 L22: 1.2569 REMARK 3 L33: 1.9700 L12: -0.3793 REMARK 3 L13: -0.5118 L23: -0.0965 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.1460 S13: -0.1578 REMARK 3 S21: -0.0092 S22: 0.0533 S23: 0.0826 REMARK 3 S31: 0.2004 S32: -0.2434 S33: 0.0041 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0338 43.6133 0.9368 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.2433 REMARK 3 T33: 0.1344 T12: -0.0219 REMARK 3 T13: 0.0168 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.1302 L22: 0.9785 REMARK 3 L33: 1.5178 L12: 0.1942 REMARK 3 L13: 0.2225 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: 0.0267 S13: -0.0478 REMARK 3 S21: -0.0540 S22: 0.0422 S23: 0.0570 REMARK 3 S31: 0.1797 S32: -0.1366 S33: 0.0379 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2337 57.8499 8.9404 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.2412 REMARK 3 T33: 0.1175 T12: -0.0051 REMARK 3 T13: 0.0053 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5113 L22: 1.2455 REMARK 3 L33: 1.1095 L12: -0.0725 REMARK 3 L13: 0.0201 L23: 0.3301 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.0701 S13: 0.0269 REMARK 3 S21: 0.0586 S22: 0.0360 S23: -0.0985 REMARK 3 S31: -0.0272 S32: 0.0716 S33: -0.0161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3036 59.6361 -9.5523 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.2992 REMARK 3 T33: 0.1111 T12: -0.0142 REMARK 3 T13: -0.0189 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.5126 L22: 1.4856 REMARK 3 L33: 0.7450 L12: 0.7204 REMARK 3 L13: 0.0868 L23: 0.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0931 S13: 0.0780 REMARK 3 S21: -0.1144 S22: 0.0028 S23: 0.1980 REMARK 3 S31: 0.0020 S32: -0.2176 S33: -0.0215 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4419 64.2291 2.6379 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.2924 REMARK 3 T33: 0.1600 T12: 0.0103 REMARK 3 T13: -0.0094 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.8436 L22: 0.1901 REMARK 3 L33: 2.0679 L12: 0.5038 REMARK 3 L13: -1.7511 L23: -0.4485 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0860 S13: 0.1713 REMARK 3 S21: 0.0279 S22: 0.0946 S23: 0.0948 REMARK 3 S31: -0.0529 S32: -0.3077 S33: -0.0427 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5790 65.9451 18.3217 REMARK 3 T TENSOR REMARK 3 T11: 0.2345 T22: 0.3351 REMARK 3 T33: 0.1883 T12: 0.0062 REMARK 3 T13: 0.0285 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.3716 L22: 1.3676 REMARK 3 L33: 0.9911 L12: -0.2316 REMARK 3 L13: 0.0255 L23: -0.2461 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.0416 S13: 0.0694 REMARK 3 S21: 0.1982 S22: 0.0768 S23: 0.1040 REMARK 3 S31: -0.1214 S32: -0.2343 S33: -0.0335 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 519 THROUGH 553 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6313 71.0421 11.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.3386 REMARK 3 T33: 0.2687 T12: 0.0116 REMARK 3 T13: 0.0145 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.7603 L22: 2.5131 REMARK 3 L33: 2.9700 L12: -0.3301 REMARK 3 L13: 0.1895 L23: -0.3356 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.2111 S13: 0.4004 REMARK 3 S21: 0.0378 S22: 0.0779 S23: 0.2906 REMARK 3 S31: -0.4918 S32: -0.2907 S33: 0.0091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.797 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.376 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.39 REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX PHENIX.REFINE REMARK 200 STARTING MODEL: 5WM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.5, 1.7 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.27500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.27500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 539 REMARK 465 VAL A 540 REMARK 465 GLY A 554 REMARK 465 GLN A 555 REMARK 465 LEU A 556 REMARK 465 ARG A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 GLY A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 LYS A 546 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 315 O HOH A 701 2.10 REMARK 500 O HOH A 985 O HOH A 1196 2.11 REMARK 500 O HOH A 956 O HOH A 1040 2.11 REMARK 500 O HOH A 902 O HOH A 1164 2.11 REMARK 500 O HOH A 929 O HOH A 971 2.13 REMARK 500 O HOH A 713 O HOH A 1122 2.15 REMARK 500 O HOH A 742 O HOH A 892 2.17 REMARK 500 O HOH A 995 O HOH A 1127 2.17 REMARK 500 O HOH A 1156 O HOH A 1183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 738 O HOH A 978 5565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 83.90 -1.14 REMARK 500 ARG A 131 -162.46 -120.81 REMARK 500 ALA A 182 -124.65 60.06 REMARK 500 PHE A 184 -157.99 -94.92 REMARK 500 LEU A 357 123.65 -38.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1235 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1236 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1238 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1239 DISTANCE = 7.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B5Y A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 DBREF1 5WM5 A 21 564 UNP A0A140DJY3_9ACTN DBREF2 5WM5 A A0A140DJY3 1 544 SEQADV 5WM5 MET A 1 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 GLY A 2 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 SER A 3 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 SER A 4 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 5 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 6 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 7 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 8 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 9 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 10 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 SER A 11 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 SER A 12 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 GLY A 13 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 LEU A 14 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 VAL A 15 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 PRO A 16 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 ARG A 17 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 GLY A 18 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 SER A 19 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM5 HIS A 20 UNP A0A140DJY EXPRESSION TAG SEQRES 1 A 564 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 564 LEU VAL PRO ARG GLY SER HIS MET LEU ASP GLY TRP VAL SEQRES 3 A 564 PRO TRP PRO GLU SER PHE ALA ARG ARG TYR ARG ALA ALA SEQRES 4 A 564 GLY TYR TRP GLU GLY ARG PRO LEU ASP ARG LEU LEU ARG SEQRES 5 A 564 GLU ARG ALA ALA ALA ASP PRO ASP ARG ILE ALA LEU VAL SEQRES 6 A 564 ASP ALA ALA GLY ASP ARG TRP THR TYR ALA GLU LEU ASP SEQRES 7 A 564 ARG HIS ALA ASP ARG GLN ALA ALA GLY LEU ARG ARG LEU SEQRES 8 A 564 GLY ILE GLY ALA GLY ASP ARG VAL VAL VAL GLN LEU PRO SEQRES 9 A 564 ASN THR ASP ALA PHE VAL VAL LEU PHE PHE ALA LEU LEU SEQRES 10 A 564 ARG ALA GLY ALA VAL PRO VAL LEU THR LEU PRO ALA HIS SEQRES 11 A 564 ARG GLU SER GLU ILE VAL HIS VAL ALA GLU THR ALA GLY SEQRES 12 A 564 ALA THR ALA TYR VAL ILE PRO ASP VAL LEU ASP GLY PHE SEQRES 13 A 564 ASP HIS ARG ALA LEU ALA ARG ALA ALA ARG LYS ALA VAL SEQRES 14 A 564 PRO SER ILE GLU HIS VAL LEU VAL ALA GLY GLU ALA ALA SEQRES 15 A 564 GLU PHE THR ALA LEU ALA ASP VAL ASP ALA ALA PRO VAL SEQRES 16 A 564 PRO LEU ALA GLU PRO ASP PRO GLY ASP VAL ALA LEU LEU SEQRES 17 A 564 LEU LEU SER GLY GLY THR THR GLY LYS PRO LYS LEU ILE SEQRES 18 A 564 PRO ARG THR HIS ASP ASP TYR THR TYR ASN VAL ARG ALA SEQRES 19 A 564 SER ALA GLU VAL CYS GLY PHE ASP SER ASP THR VAL TYR SEQRES 20 A 564 LEU VAL VAL LEU PRO THR ALA HIS ASN PHE ALA LEU ALA SEQRES 21 A 564 CYS PRO GLY LEU LEU GLY THR LEU MET VAL GLY GLY THR SEQRES 22 A 564 VAL VAL LEU ALA PRO THR PRO SER PRO GLU ASP ALA PHE SEQRES 23 A 564 GLU LEU ILE GLU ARG GLU LYS VAL THR ALA THR ALA VAL SEQRES 24 A 564 VAL PRO PRO VAL ALA LEU LEU TRP LEU ASP ALA VAL GLU SEQRES 25 A 564 TRP GLU ASP ALA ASP LEU SER SER LEU ARG LEU LEU GLN SEQRES 26 A 564 VAL GLY GLY SER LYS LEU GLY ALA GLU PRO ALA ALA ARG SEQRES 27 A 564 VAL ARG PRO ALA LEU GLY CYS THR LEU GLN GLN VAL PHE SEQRES 28 A 564 GLY MET ALA GLU GLY LEU LEU ASN TYR THR ARG LEU ASP SEQRES 29 A 564 ASP PRO SER ASP LEU VAL ILE GLN THR GLN GLY ARG PRO SEQRES 30 A 564 LEU SER PRO ASP ASP GLU ILE ARG VAL VAL ASP GLU ASP SEQRES 31 A 564 GLY ARG ASP VAL ALA PRO GLY GLU THR GLY GLU LEU LEU SEQRES 32 A 564 THR ARG GLY PRO TYR THR LEU ARG GLY TYR TYR ARG ALA SEQRES 33 A 564 PRO GLU HIS ASN ALA ARG THR PHE SER ASP ASP GLY PHE SEQRES 34 A 564 TYR ARG THR GLY ASP LEU VAL ARG VAL LEU PRO SER GLY SEQRES 35 A 564 HIS LEU VAL VAL GLU GLY ARG ALA LYS ASP GLN ILE ASN SEQRES 36 A 564 ARG GLY GLY ASP LYS ILE SER ALA GLU GLU LEU GLU ASN SEQRES 37 A 564 HIS ILE MET ALA HIS PRO GLY VAL HIS ASP ALA ALA VAL SEQRES 38 A 564 VAL GLY MET PRO ASP ALA THR MET GLY GLU ARG THR CYS SEQRES 39 A 564 ALA CYS LEU VAL PRO ARG ALA GLY ARG SER ALA PRO ALA SEQRES 40 A 564 GLN ARG GLU LEU ALA ALA PHE LEU THR ASP ARG GLY VAL SEQRES 41 A 564 ALA ALA TYR LYS LEU PRO ASP ARG VAL GLU VAL MET ASP SEQRES 42 A 564 ALA PHE PRO ARG THR SER VAL GLY LYS THR ASP LYS LYS SEQRES 43 A 564 GLU LEU GLY ARG ARG ILE ALA GLY GLN LEU ARG THR GLU SEQRES 44 A 564 ASP GLY GLY VAL HIS HET B5Y A 601 33 HET ACT A 602 4 HET ACT A 603 4 HET GOL A 604 6 HETNAM B5Y 9-(5-O-{(S)-HYDROXY[(2-HYDROXY-5-METHYLBENZENE-1- HETNAM 2 B5Y CARBONYL)OXY]PHOSPHORYL}-ALPHA-L-LYXOFURANOSYL)-9H- HETNAM 3 B5Y PURIN-6-AMINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 B5Y C18 H20 N5 O9 P FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *539(H2 O) HELIX 1 AA1 PRO A 29 ALA A 39 1 11 HELIX 2 AA2 ASP A 48 ASP A 58 1 11 HELIX 3 AA3 TYR A 74 LEU A 91 1 18 HELIX 4 AA4 THR A 106 GLY A 120 1 15 HELIX 5 AA5 ARG A 131 GLY A 143 1 13 HELIX 6 AA6 HIS A 158 VAL A 169 1 12 HELIX 7 AA7 ALA A 188 VAL A 190 5 3 HELIX 8 AA8 HIS A 225 CYS A 239 1 15 HELIX 9 AA9 HIS A 255 CYS A 261 1 7 HELIX 10 AB1 PRO A 262 GLY A 271 1 10 HELIX 11 AB2 SER A 281 LYS A 293 1 13 HELIX 12 AB3 VAL A 300 VAL A 311 1 12 HELIX 13 AB4 GLY A 332 ARG A 338 1 7 HELIX 14 AB5 ARG A 338 GLY A 344 1 7 HELIX 15 AB6 PRO A 366 THR A 373 1 8 HELIX 16 AB7 ALA A 416 PHE A 424 1 9 HELIX 17 AB8 ALA A 463 ALA A 472 1 10 HELIX 18 AB9 ALA A 507 GLY A 519 1 13 HELIX 19 AC1 ALA A 521 LEU A 525 5 5 HELIX 20 AC2 ASP A 544 ARG A 551 1 8 SHEET 1 AA1 9 ARG A 71 THR A 73 0 SHEET 2 AA1 9 ILE A 62 VAL A 65 -1 N ALA A 63 O TRP A 72 SHEET 3 AA1 9 THR A 273 LEU A 276 1 O VAL A 274 N ALA A 63 SHEET 4 AA1 9 VAL A 246 VAL A 249 1 N TYR A 247 O VAL A 275 SHEET 5 AA1 9 ALA A 296 VAL A 299 1 O ALA A 296 N LEU A 248 SHEET 6 AA1 9 LEU A 323 GLY A 327 1 O GLN A 325 N THR A 297 SHEET 7 AA1 9 THR A 346 MET A 353 1 O THR A 346 N LEU A 324 SHEET 8 AA1 9 GLY A 356 TYR A 360 -1 O ASN A 359 N PHE A 351 SHEET 9 AA1 9 ARG A 376 PRO A 377 -1 O ARG A 376 N TYR A 360 SHEET 1 AA2 5 VAL A 122 THR A 126 0 SHEET 2 AA2 5 ARG A 98 GLN A 102 1 N VAL A 99 O VAL A 124 SHEET 3 AA2 5 ALA A 146 PRO A 150 1 O VAL A 148 N VAL A 100 SHEET 4 AA2 5 HIS A 174 ALA A 178 1 O ALA A 178 N ILE A 149 SHEET 5 AA2 5 THR A 185 ALA A 186 1 O THR A 185 N VAL A 177 SHEET 1 AA3 2 VAL A 152 LEU A 153 0 SHEET 2 AA3 2 PHE A 156 ASP A 157 -1 O PHE A 156 N LEU A 153 SHEET 1 AA4 2 VAL A 205 SER A 211 0 SHEET 2 AA4 2 LYS A 219 THR A 224 -1 O ARG A 223 N ALA A 206 SHEET 1 AA5 4 GLU A 383 VAL A 387 0 SHEET 2 AA5 4 GLY A 400 ARG A 405 -1 O ARG A 405 N GLU A 383 SHEET 3 AA5 4 TYR A 430 VAL A 438 -1 O TYR A 430 N THR A 404 SHEET 4 AA5 4 LEU A 444 ARG A 449 -1 O GLU A 447 N LEU A 435 SHEET 1 AA6 2 GLN A 453 ARG A 456 0 SHEET 2 AA6 2 ASP A 459 SER A 462 -1 O ASP A 459 N ARG A 456 SHEET 1 AA7 3 VAL A 476 ASP A 486 0 SHEET 2 AA7 3 GLY A 490 PRO A 499 -1 O CYS A 496 N ALA A 480 SHEET 3 AA7 3 ARG A 528 VAL A 531 1 O GLU A 530 N LEU A 497 CISPEP 1 CYS A 261 PRO A 262 0 -7.41 SITE 1 AC1 18 ASN A 256 PHE A 257 GLY A 328 SER A 329 SITE 2 AC1 18 LYS A 330 VAL A 350 PHE A 351 GLY A 352 SITE 3 AC1 18 MET A 353 ALA A 354 GLU A 355 ASP A 434 SITE 4 AC1 18 LYS A 451 LYS A 460 HOH A 712 HOH A 758 SITE 5 AC1 18 HOH A 846 HOH A 888 SITE 1 AC2 7 CYS A 239 PHE A 241 THR A 245 THR A 295 SITE 2 AC2 7 ARG A 322 ARG A 509 HOH A 828 SITE 1 AC3 6 ALA A 416 PRO A 417 GLU A 418 HIS A 419 SITE 2 AC3 6 HOH A 729 HOH A 960 SITE 1 AC4 6 LEU A 125 LEU A 210 ALA A 254 ASN A 256 SITE 2 AC4 6 HOH A 752 HOH A 758 CRYST1 121.711 121.711 87.825 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008216 0.004744 0.000000 0.00000 SCALE2 0.000000 0.009487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011386 0.00000