HEADER LIGASE 28-JUL-17 5WM6 TITLE CRYSTAL STRUCTURE OF CAHJ IN COMPLEX WITH BENZOYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SALICYLATE-AMP LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GANDOCAENSIS; SOURCE 3 ORGANISM_TAXID: 1649596; SOURCE 4 GENE: CAHJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LIGASE, ADENYLATION DOMAIN, PEPTIDE SYNTHETASE. EXPDTA X-RAY DIFFRACTION AUTHOR A.P.SIKKEMA,J.L.SMITH REVDAT 5 04-OCT-23 5WM6 1 LINK REVDAT 4 25-DEC-19 5WM6 1 REMARK REVDAT 3 29-AUG-18 5WM6 1 JRNL REVDAT 2 04-JUL-18 5WM6 1 JRNL REVDAT 1 23-MAY-18 5WM6 0 JRNL AUTH A.TRIPATHI,S.R.PARK,A.P.SIKKEMA,H.J.CHO,J.WU,B.LEE,C.XI, JRNL AUTH 2 J.L.SMITH,D.H.SHERMAN JRNL TITL A DEFINED AND FLEXIBLE POCKET EXPLAINS ARYL SUBSTRATE JRNL TITL 2 PROMISCUITY OF THE CAHUITAMYCIN STARTER UNIT-ACTIVATING JRNL TITL 3 ENZYME CAHJ. JRNL REF CHEMBIOCHEM V. 19 1595 2018 JRNL REFN ESSN 1439-7633 JRNL PMID 29742306 JRNL DOI 10.1002/CBIC.201800233 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 83.840 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.730 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6412 - 4.4513 0.94 8359 148 0.1169 0.1441 REMARK 3 2 4.4513 - 3.5341 0.95 8500 138 0.1220 0.1822 REMARK 3 3 3.5341 - 3.0877 0.94 8333 134 0.1350 0.1963 REMARK 3 4 3.0877 - 2.8055 0.95 8504 146 0.1397 0.2119 REMARK 3 5 2.8055 - 2.6045 0.92 8225 143 0.1488 0.1945 REMARK 3 6 2.6045 - 2.4509 0.93 8306 135 0.1668 0.2393 REMARK 3 7 2.4509 - 2.3282 0.94 8361 127 0.1795 0.2478 REMARK 3 8 2.3282 - 2.2269 0.94 8361 145 0.1880 0.2196 REMARK 3 9 2.2269 - 2.1412 0.91 8058 131 0.1983 0.2728 REMARK 3 10 2.1412 - 2.0673 0.92 8257 130 0.2111 0.2665 REMARK 3 11 2.0673 - 2.0027 0.92 8175 136 0.2268 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4192 REMARK 3 ANGLE : 0.854 5723 REMARK 3 CHIRALITY : 0.052 647 REMARK 3 PLANARITY : 0.006 762 REMARK 3 DIHEDRAL : 4.344 3434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6392 40.9228 -13.2928 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2242 REMARK 3 T33: 0.0886 T12: -0.0708 REMARK 3 T13: -0.0464 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.5003 L22: 0.2092 REMARK 3 L33: 1.6251 L12: -0.4700 REMARK 3 L13: -0.2768 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0754 S13: -0.2380 REMARK 3 S21: -0.1788 S22: -0.0296 S23: 0.0905 REMARK 3 S31: 0.2504 S32: -0.1528 S33: -0.0142 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0768 37.0539 12.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1496 REMARK 3 T33: 0.0890 T12: -0.0277 REMARK 3 T13: 0.0084 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.0530 L22: 0.6734 REMARK 3 L33: 0.8686 L12: -0.0770 REMARK 3 L13: -0.2666 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.0702 S13: -0.1309 REMARK 3 S21: 0.0256 S22: 0.0297 S23: 0.0547 REMARK 3 S31: 0.1442 S32: -0.1055 S33: 0.0186 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9254 53.8665 3.6718 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.1327 REMARK 3 T33: 0.0335 T12: -0.0125 REMARK 3 T13: 0.0077 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.5116 L22: 0.7322 REMARK 3 L33: 0.7059 L12: -0.0395 REMARK 3 L13: -0.0494 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.0072 S13: -0.0166 REMARK 3 S21: -0.0010 S22: 0.0273 S23: -0.0283 REMARK 3 S31: 0.0321 S32: -0.0108 S33: 0.0084 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2447 62.4659 -0.0817 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1926 REMARK 3 T33: 0.0850 T12: 0.0012 REMARK 3 T13: -0.0242 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.5825 L22: 0.5196 REMARK 3 L33: 0.7553 L12: -0.0104 REMARK 3 L13: -0.2149 L23: 0.1192 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0555 S13: 0.0699 REMARK 3 S21: 0.0106 S22: 0.0417 S23: 0.1484 REMARK 3 S31: -0.0722 S32: -0.1849 S33: -0.0153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 500 THROUGH 553 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1622 68.0410 14.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.2504 REMARK 3 T33: 0.1834 T12: 0.0261 REMARK 3 T13: -0.0037 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.2932 L22: 1.1989 REMARK 3 L33: 0.9700 L12: -0.2732 REMARK 3 L13: -0.0973 L23: -0.0743 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0209 S13: 0.1139 REMARK 3 S21: -0.0276 S22: 0.0352 S23: 0.2452 REMARK 3 S31: -0.1781 S32: -0.1997 S33: -0.0460 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WM6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.208 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.385 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.35 REMARK 200 R MERGE FOR SHELL (I) : 0.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5WM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.5, 1.7 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.60933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.30467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.30467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.60933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1080 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 554 REMARK 465 GLN A 555 REMARK 465 LEU A 556 REMARK 465 ARG A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 GLY A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 887 O HOH A 923 1.89 REMARK 500 O HOH A 887 O HOH A 903 2.02 REMARK 500 O HOH A 1024 O HOH A 1064 2.07 REMARK 500 O HOH A 988 O HOH A 1024 2.07 REMARK 500 OD2 ASP A 66 O HOH A 701 2.08 REMARK 500 O GLY A 44 O HOH A 702 2.09 REMARK 500 O HOH A 788 O HOH A 1009 2.12 REMARK 500 O HOH A 836 O HOH A 891 2.13 REMARK 500 O HOH A 899 O HOH A 971 2.13 REMARK 500 O HOH A 994 O HOH A 1067 2.13 REMARK 500 O HOH A 991 O HOH A 1034 2.14 REMARK 500 O HOH A 779 O HOH A 979 2.15 REMARK 500 O HOH A 935 O HOH A 1021 2.16 REMARK 500 OE2 GLU A 43 NH2 ARG A 45 2.16 REMARK 500 O HOH A 1003 O HOH A 1012 2.16 REMARK 500 OD2 ASP A 97 O HOH A 703 2.17 REMARK 500 O HOH A 1094 O HOH A 1097 2.17 REMARK 500 O HOH A 823 O HOH A 1034 2.18 REMARK 500 OD2 ASP A 82 O HOH A 704 2.19 REMARK 500 O HOH A 843 O HOH A 940 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 107.15 -47.84 REMARK 500 ARG A 131 -156.33 -122.36 REMARK 500 ASP A 151 -74.90 -79.89 REMARK 500 ALA A 182 -124.75 60.65 REMARK 500 LEU A 357 122.92 -32.85 REMARK 500 VAL A 540 -10.52 73.44 REMARK 500 ILE A 552 49.89 -101.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1097 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1098 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1099 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1100 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 319 O REMARK 620 2 LEU A 321 O 93.9 REMARK 620 3 GLY A 344 O 162.8 103.2 REMARK 620 4 HOH A 726 O 93.4 96.3 82.9 REMARK 620 5 HOH A 931 O 93.7 83.4 90.2 172.8 REMARK 620 6 HOH A1013 O 80.7 171.6 82.5 90.5 90.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 DBREF1 5WM6 A 21 564 UNP A0A140DJY3_9ACTN DBREF2 5WM6 A A0A140DJY3 1 544 SEQADV 5WM6 MET A 1 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 GLY A 2 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 SER A 3 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 SER A 4 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 5 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 6 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 7 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 8 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 9 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 10 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 SER A 11 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 SER A 12 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 GLY A 13 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 LEU A 14 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 VAL A 15 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 PRO A 16 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 ARG A 17 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 GLY A 18 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 SER A 19 UNP A0A140DJY EXPRESSION TAG SEQADV 5WM6 HIS A 20 UNP A0A140DJY EXPRESSION TAG SEQRES 1 A 564 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 564 LEU VAL PRO ARG GLY SER HIS MET LEU ASP GLY TRP VAL SEQRES 3 A 564 PRO TRP PRO GLU SER PHE ALA ARG ARG TYR ARG ALA ALA SEQRES 4 A 564 GLY TYR TRP GLU GLY ARG PRO LEU ASP ARG LEU LEU ARG SEQRES 5 A 564 GLU ARG ALA ALA ALA ASP PRO ASP ARG ILE ALA LEU VAL SEQRES 6 A 564 ASP ALA ALA GLY ASP ARG TRP THR TYR ALA GLU LEU ASP SEQRES 7 A 564 ARG HIS ALA ASP ARG GLN ALA ALA GLY LEU ARG ARG LEU SEQRES 8 A 564 GLY ILE GLY ALA GLY ASP ARG VAL VAL VAL GLN LEU PRO SEQRES 9 A 564 ASN THR ASP ALA PHE VAL VAL LEU PHE PHE ALA LEU LEU SEQRES 10 A 564 ARG ALA GLY ALA VAL PRO VAL LEU THR LEU PRO ALA HIS SEQRES 11 A 564 ARG GLU SER GLU ILE VAL HIS VAL ALA GLU THR ALA GLY SEQRES 12 A 564 ALA THR ALA TYR VAL ILE PRO ASP VAL LEU ASP GLY PHE SEQRES 13 A 564 ASP HIS ARG ALA LEU ALA ARG ALA ALA ARG LYS ALA VAL SEQRES 14 A 564 PRO SER ILE GLU HIS VAL LEU VAL ALA GLY GLU ALA ALA SEQRES 15 A 564 GLU PHE THR ALA LEU ALA ASP VAL ASP ALA ALA PRO VAL SEQRES 16 A 564 PRO LEU ALA GLU PRO ASP PRO GLY ASP VAL ALA LEU LEU SEQRES 17 A 564 LEU LEU SER GLY GLY THR THR GLY LYS PRO LYS LEU ILE SEQRES 18 A 564 PRO ARG THR HIS ASP ASP TYR THR TYR ASN VAL ARG ALA SEQRES 19 A 564 SER ALA GLU VAL CYS GLY PHE ASP SER ASP THR VAL TYR SEQRES 20 A 564 LEU VAL VAL LEU PRO THR ALA HIS ASN PHE ALA LEU ALA SEQRES 21 A 564 CYS PRO GLY LEU LEU GLY THR LEU MET VAL GLY GLY THR SEQRES 22 A 564 VAL VAL LEU ALA PRO THR PRO SER PRO GLU ASP ALA PHE SEQRES 23 A 564 GLU LEU ILE GLU ARG GLU LYS VAL THR ALA THR ALA VAL SEQRES 24 A 564 VAL PRO PRO VAL ALA LEU LEU TRP LEU ASP ALA VAL GLU SEQRES 25 A 564 TRP GLU ASP ALA ASP LEU SER SER LEU ARG LEU LEU GLN SEQRES 26 A 564 VAL GLY GLY SER LYS LEU GLY ALA GLU PRO ALA ALA ARG SEQRES 27 A 564 VAL ARG PRO ALA LEU GLY CYS THR LEU GLN GLN VAL PHE SEQRES 28 A 564 GLY MET ALA GLU GLY LEU LEU ASN TYR THR ARG LEU ASP SEQRES 29 A 564 ASP PRO SER ASP LEU VAL ILE GLN THR GLN GLY ARG PRO SEQRES 30 A 564 LEU SER PRO ASP ASP GLU ILE ARG VAL VAL ASP GLU ASP SEQRES 31 A 564 GLY ARG ASP VAL ALA PRO GLY GLU THR GLY GLU LEU LEU SEQRES 32 A 564 THR ARG GLY PRO TYR THR LEU ARG GLY TYR TYR ARG ALA SEQRES 33 A 564 PRO GLU HIS ASN ALA ARG THR PHE SER ASP ASP GLY PHE SEQRES 34 A 564 TYR ARG THR GLY ASP LEU VAL ARG VAL LEU PRO SER GLY SEQRES 35 A 564 HIS LEU VAL VAL GLU GLY ARG ALA LYS ASP GLN ILE ASN SEQRES 36 A 564 ARG GLY GLY ASP LYS ILE SER ALA GLU GLU LEU GLU ASN SEQRES 37 A 564 HIS ILE MET ALA HIS PRO GLY VAL HIS ASP ALA ALA VAL SEQRES 38 A 564 VAL GLY MET PRO ASP ALA THR MET GLY GLU ARG THR CYS SEQRES 39 A 564 ALA CYS LEU VAL PRO ARG ALA GLY ARG SER ALA PRO ALA SEQRES 40 A 564 GLN ARG GLU LEU ALA ALA PHE LEU THR ASP ARG GLY VAL SEQRES 41 A 564 ALA ALA TYR LYS LEU PRO ASP ARG VAL GLU VAL MET ASP SEQRES 42 A 564 ALA PHE PRO ARG THR SER VAL GLY LYS THR ASP LYS LYS SEQRES 43 A 564 GLU LEU GLY ARG ARG ILE ALA GLY GLN LEU ARG THR GLU SEQRES 44 A 564 ASP GLY GLY VAL HIS HET OOB A 601 31 HET ACT A 602 4 HET MG A 603 1 HETNAM OOB 5'-O-[(R)-(BENZOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION FORMUL 2 OOB C17 H18 N5 O8 P FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 MG MG 2+ FORMUL 5 HOH *400(H2 O) HELIX 1 AA1 PRO A 29 ALA A 39 1 11 HELIX 2 AA2 ASP A 48 ASP A 58 1 11 HELIX 3 AA3 TYR A 74 LEU A 91 1 18 HELIX 4 AA4 THR A 106 ALA A 119 1 14 HELIX 5 AA5 ARG A 131 GLY A 143 1 13 HELIX 6 AA6 HIS A 158 VAL A 169 1 12 HELIX 7 AA7 ALA A 188 VAL A 190 5 3 HELIX 8 AA8 HIS A 225 CYS A 239 1 15 HELIX 9 AA9 HIS A 255 CYS A 261 1 7 HELIX 10 AB1 PRO A 262 GLY A 271 1 10 HELIX 11 AB2 SER A 281 LYS A 293 1 13 HELIX 12 AB3 VAL A 300 VAL A 311 1 12 HELIX 13 AB4 GLY A 332 ARG A 338 1 7 HELIX 14 AB5 ARG A 338 GLY A 344 1 7 HELIX 15 AB6 PRO A 366 THR A 373 1 8 HELIX 16 AB7 ALA A 416 PHE A 424 1 9 HELIX 17 AB8 ALA A 463 ALA A 472 1 10 HELIX 18 AB9 ALA A 507 GLY A 519 1 13 HELIX 19 AC1 ALA A 521 LEU A 525 5 5 HELIX 20 AC2 THR A 538 LYS A 542 5 5 HELIX 21 AC3 ASP A 544 ILE A 552 1 9 SHEET 1 AA1 9 ARG A 71 THR A 73 0 SHEET 2 AA1 9 ILE A 62 VAL A 65 -1 N LEU A 64 O TRP A 72 SHEET 3 AA1 9 THR A 273 LEU A 276 1 O VAL A 274 N ALA A 63 SHEET 4 AA1 9 VAL A 246 VAL A 249 1 N VAL A 249 O VAL A 275 SHEET 5 AA1 9 ALA A 296 VAL A 299 1 O ALA A 296 N LEU A 248 SHEET 6 AA1 9 LEU A 323 GLY A 327 1 O GLN A 325 N VAL A 299 SHEET 7 AA1 9 THR A 346 MET A 353 1 O THR A 346 N LEU A 324 SHEET 8 AA1 9 GLY A 356 TYR A 360 -1 O ASN A 359 N PHE A 351 SHEET 9 AA1 9 ARG A 376 PRO A 377 -1 O ARG A 376 N TYR A 360 SHEET 1 AA2 7 THR A 185 ALA A 186 0 SHEET 2 AA2 7 HIS A 174 ALA A 178 1 N VAL A 177 O THR A 185 SHEET 3 AA2 7 ALA A 146 PRO A 150 1 N ILE A 149 O ALA A 178 SHEET 4 AA2 7 ARG A 98 VAL A 101 1 N VAL A 100 O VAL A 148 SHEET 5 AA2 7 VAL A 122 LEU A 125 1 O VAL A 124 N VAL A 99 SHEET 6 AA2 7 VAL A 205 LEU A 210 1 O LEU A 208 N PRO A 123 SHEET 7 AA2 7 LEU A 220 THR A 224 -1 O ILE A 221 N LEU A 209 SHEET 1 AA3 2 VAL A 152 LEU A 153 0 SHEET 2 AA3 2 PHE A 156 ASP A 157 -1 O PHE A 156 N LEU A 153 SHEET 1 AA4 4 GLU A 383 VAL A 387 0 SHEET 2 AA4 4 GLY A 400 ARG A 405 -1 O ARG A 405 N GLU A 383 SHEET 3 AA4 4 TYR A 430 VAL A 438 -1 O TYR A 430 N THR A 404 SHEET 4 AA4 4 LEU A 444 ARG A 449 -1 O GLU A 447 N LEU A 435 SHEET 1 AA5 2 GLN A 453 ARG A 456 0 SHEET 2 AA5 2 ASP A 459 SER A 462 -1 O ASP A 459 N ARG A 456 SHEET 1 AA6 3 VAL A 476 ASP A 486 0 SHEET 2 AA6 3 GLY A 490 PRO A 499 -1 O CYS A 496 N ALA A 480 SHEET 3 AA6 3 ARG A 528 VAL A 531 1 O GLU A 530 N LEU A 497 LINK O SER A 319 MG MG A 603 1555 1555 2.49 LINK O LEU A 321 MG MG A 603 1555 1555 2.24 LINK O GLY A 344 MG MG A 603 1555 1555 2.62 LINK MG MG A 603 O HOH A 726 1555 1555 2.64 LINK MG MG A 603 O HOH A 931 1555 1555 2.36 LINK MG MG A 603 O HOH A1013 1555 1555 2.81 CISPEP 1 CYS A 261 PRO A 262 0 -3.48 SITE 1 AC1 15 PHE A 257 GLY A 327 GLY A 328 SER A 329 SITE 2 AC1 15 LYS A 330 VAL A 350 PHE A 351 GLY A 352 SITE 3 AC1 15 MET A 353 ALA A 354 ASP A 434 LYS A 451 SITE 4 AC1 15 LYS A 460 HOH A 761 HOH A 809 SITE 1 AC2 8 CYS A 239 PHE A 241 THR A 245 THR A 295 SITE 2 AC2 8 ALA A 296 ARG A 322 ARG A 509 HOH A 721 SITE 1 AC3 6 SER A 319 LEU A 321 GLY A 344 HOH A 726 SITE 2 AC3 6 HOH A 931 HOH A1013 CRYST1 121.733 121.733 87.914 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008215 0.004743 0.000000 0.00000 SCALE2 0.000000 0.009486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011375 0.00000