HEADER DE NOVO PROTEIN 01-AUG-17 5WOC TITLE DE NOVO DESIGN OF COVALENTLY CONSTRAINED MESO-SIZE PROTEIN SCAFFOLDS TITLE 2 WITH UNIQUE TERTIARY STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER-PRO-GLU-GLU-ARG-ALA-GLN-LEU-CYS-THR-ALA-ALA-GLU-LYS- COMPND 3 ALA-ASP-GLU-LEU-GLY; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DE NOVO DESIGN, COVALENT CONSTRAINED PEPTIDE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.WU,Y.WU,W.F.DEGRADO REVDAT 5 30-OCT-24 5WOC 1 REMARK REVDAT 4 14-JUN-23 5WOC 1 REMARK LINK REVDAT 3 08-NOV-17 5WOC 1 JRNL REVDAT 2 18-OCT-17 5WOC 1 JRNL REVDAT 1 04-OCT-17 5WOC 0 JRNL AUTH B.DANG,H.WU,V.K.MULLIGAN,M.MRAVIC,Y.WU,T.LEMMIN,A.FORD, JRNL AUTH 2 D.A.SILVA,D.BAKER,W.F.DEGRADO JRNL TITL DE NOVO DESIGN OF COVALENTLY CONSTRAINED MESOSIZE PROTEIN JRNL TITL 2 SCAFFOLDS WITH UNIQUE TERTIARY STRUCTURES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 10852 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28973862 JRNL DOI 10.1073/PNAS.1710695114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229359. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM NON-LABEL 1, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, XEASY, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 1 C GLY B 19 1.33 REMARK 500 C GLY A 19 N SER B 1 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide B74 A 100 and CYS B REMARK 800 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30319 RELATED DB: BMRB REMARK 900 DE NOVO DESIGN OF COVALENTLY CONSTRAINED MESO-SIZE PROTEIN REMARK 900 SCAFFOLDS WITH UNIQUE TERTIARY STRCTURES DBREF 5WOC A 1 19 PDB 5WOC 5WOC 1 19 DBREF 5WOC B 1 19 PDB 5WOC 5WOC 1 19 SEQRES 1 A 19 SER PRO GLU GLU ARG ALA GLN LEU CYS THR ALA ALA GLU SEQRES 2 A 19 LYS ALA ASP GLU LEU GLY SEQRES 1 B 19 SER PRO GLU GLU ARG ALA GLN LEU CYS THR ALA ALA GLU SEQRES 2 B 19 LYS ALA ASP GLU LEU GLY HET B74 A 100 16 HETNAM B74 (3-METHYLPHENYL)METHANOL FORMUL 3 B74 C8 H10 O HELIX 1 AA1 SER A 1 GLY A 19 1 19 HELIX 2 AA2 PRO B 2 GLY B 19 1 18 LINK SG CYS A 9 CB1 B74 A 100 1555 1555 1.81 LINK CB2 B74 A 100 SG CYS B 9 1555 1555 1.81 SITE 1 AC1 16 ARG A 5 ALA A 6 GLN A 7 LEU A 8 SITE 2 AC1 16 THR A 10 ALA A 11 ALA A 12 GLU A 13 SITE 3 AC1 16 ARG B 5 ALA B 6 GLN B 7 LEU B 8 SITE 4 AC1 16 THR B 10 ALA B 11 ALA B 12 GLU B 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1