HEADER OXIDOREDUCTASE 02-AUG-17 5WOL TITLE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE DAPB FROM COXIELLA TITLE 2 BURNETII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HTPA REDUCTASE; COMPND 5 EC: 1.17.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXIELLA BURNETII (STRAIN RSA 493 / NINE MILE SOURCE 3 PHASE I); SOURCE 4 ORGANISM_TAXID: 227377; SOURCE 5 STRAIN: RSA 493 / NINE MILE PHASE I; SOURCE 6 GENE: DAPB, CBU_1709; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS AMINO ACID BIOSYNTHESIS, L-LYSINE BIOSYNTHESIS, OXIDOREDUCTASE, KEYWDS 2 NADPH, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 4 INFECTIOUS DISEASES, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,O.ONOPRIYENKO,S.GRIMSHAW,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 04-OCT-23 5WOL 1 REMARK REVDAT 3 11-DEC-19 5WOL 1 REMARK REVDAT 2 20-SEP-17 5WOL 1 REMARK REVDAT 1 16-AUG-17 5WOL 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE DAPB FROM JRNL TITL 2 COXIELLA BURNETII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2733: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 25853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7502 - 3.5333 0.99 2991 176 0.1675 0.2163 REMARK 3 2 3.5333 - 2.8052 1.00 2940 118 0.1716 0.2016 REMARK 3 3 2.8052 - 2.4508 1.00 2904 121 0.1755 0.2105 REMARK 3 4 2.4508 - 2.2269 1.00 2862 158 0.1743 0.2149 REMARK 3 5 2.2269 - 2.0673 1.00 2827 165 0.1731 0.2045 REMARK 3 6 2.0673 - 1.9454 1.00 2831 172 0.1820 0.2129 REMARK 3 7 1.9454 - 1.8480 0.99 2816 157 0.2073 0.2717 REMARK 3 8 1.8480 - 1.7676 0.89 2568 99 0.2022 0.2353 REMARK 3 9 1.7676 - 1.6996 0.65 1841 107 0.2130 0.2386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1920 REMARK 3 ANGLE : 1.270 2607 REMARK 3 CHIRALITY : 0.084 300 REMARK 3 PLANARITY : 0.007 329 REMARK 3 DIHEDRAL : 20.405 741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:79) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3977 -7.5408 9.9703 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.1831 REMARK 3 T33: 0.2430 T12: 0.1120 REMARK 3 T13: 0.1567 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.5883 L22: 1.1173 REMARK 3 L33: 0.8511 L12: -0.4094 REMARK 3 L13: -0.4257 L23: 0.4369 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: 0.1418 S13: 0.1293 REMARK 3 S21: -0.1956 S22: -0.0867 S23: -0.0226 REMARK 3 S31: -0.2431 S32: -0.1066 S33: 0.0696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 80:113) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2646 -12.5909 22.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.2710 REMARK 3 T33: 0.2658 T12: 0.0848 REMARK 3 T13: 0.1121 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 0.8194 L22: 0.5292 REMARK 3 L33: 0.2878 L12: -0.5524 REMARK 3 L13: -0.4850 L23: 0.3435 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.1372 S13: -0.1413 REMARK 3 S21: -0.1718 S22: -0.0235 S23: -0.2073 REMARK 3 S31: 0.2024 S32: 0.2733 S33: 0.0546 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 114:157) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7944 -11.2349 39.3109 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0783 REMARK 3 T33: 0.0770 T12: 0.0583 REMARK 3 T13: -0.0423 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.0372 L22: 0.6184 REMARK 3 L33: 0.5598 L12: 0.1518 REMARK 3 L13: 0.1545 L23: 0.2221 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.0039 S13: -0.1343 REMARK 3 S21: 0.0327 S22: 0.0432 S23: -0.1751 REMARK 3 S31: 0.1044 S32: 0.1841 S33: -0.0624 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 158:198) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4415 -13.1263 40.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.0351 REMARK 3 T33: 0.0332 T12: 0.0357 REMARK 3 T13: -0.0618 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.9565 L22: 0.6478 REMARK 3 L33: 1.7141 L12: -0.2328 REMARK 3 L13: 0.9884 L23: -0.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.0220 S13: -0.0794 REMARK 3 S21: 0.0355 S22: -0.0009 S23: -0.0510 REMARK 3 S31: 0.1281 S32: 0.0708 S33: -0.0988 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 199:239) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2904 -2.5043 27.7894 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1558 REMARK 3 T33: 0.1906 T12: 0.0219 REMARK 3 T13: 0.0798 T23: -0.1004 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 0.6155 REMARK 3 L33: 0.8316 L12: -0.2595 REMARK 3 L13: -0.3920 L23: 0.0817 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.1263 S13: 0.0358 REMARK 3 S21: -0.2520 S22: 0.0446 S23: -0.3162 REMARK 3 S31: -0.0570 S32: 0.1689 S33: 0.1017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP SIMBAD REMARK 200 STARTING MODEL: 1YL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 2% (W/V) PEG400, REMARK 280 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.80250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.39750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.03700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.80250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.39750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.03700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.80250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.39750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.03700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.80250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.39750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.03700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 490 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 160 REMARK 465 LYS A 161 REMARK 465 ASP A 162 REMARK 465 GLU A 163 REMARK 465 PRO A 164 REMARK 465 PHE A 165 REMARK 465 LYS A 166 REMARK 465 ASP A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 604 2.07 REMARK 500 O HOH A 408 O HOH A 416 2.08 REMARK 500 O HOH A 601 O HOH A 607 2.09 REMARK 500 O HOH A 464 O HOH A 586 2.12 REMARK 500 O HOH A 517 O HOH A 529 2.17 REMARK 500 O HOH A 464 O HOH A 468 2.17 REMARK 500 O HOH A 529 O HOH A 551 2.18 REMARK 500 O3 SO4 A 302 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -116.93 -125.02 REMARK 500 PHE A 188 -79.73 -120.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 627 DISTANCE = 5.95 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE3 A 306 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE3 A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP02541 RELATED DB: TARGETTRACK DBREF 5WOL A 1 239 UNP P24703 DAPB_COXBU 1 239 SEQRES 1 A 239 MET ALA ILE ASN VAL ILE ILE ASN GLY ILE ASN GLY LYS SEQRES 2 A 239 MET GLY ARG VAL VAL LYS GLU ASN ILE THR ALA GLN SER SEQRES 3 A 239 ASP LEU GLU LEU VAL SER GLY THR GLY ARG GLN ASP ASP SEQRES 4 A 239 LEU ALA LYS THR ILE GLN THR THR HIS ALA ASP VAL VAL SEQRES 5 A 239 ILE ASP PHE THR THR PRO GLN SER VAL PHE HIS ASN ALA SEQRES 6 A 239 GLU ILE ILE ILE GLN SER GLY ALA ARG PRO VAL ILE GLY SEQRES 7 A 239 THR THR GLY LEU THR LEU GLU GLN ILE ALA LEU LEU ASP SEQRES 8 A 239 LYS GLN CYS ARG ASN LYS LYS LEU GLY ALA ILE VAL ALA SEQRES 9 A 239 PRO ASN PHE SER VAL GLY ALA VAL LEU MET MET LYS TYR SEQRES 10 A 239 ALA LYS GLU ALA ALA HIS TYR PHE PRO ASP VAL GLU ILE SEQRES 11 A 239 ILE GLU MET HIS HIS SER GLN LYS ILE ASP ALA PRO SER SEQRES 12 A 239 GLY THR ALA ILE LYS THR ALA GLN MET ILE GLY GLU MET SEQRES 13 A 239 ARG SER SER LYS LYS ASP GLU PRO PHE LYS ASP ARG ALA SEQRES 14 A 239 ARG GLY GLU ILE LYS ASN GLY ILE PRO ILE HIS SER ILE SEQRES 15 A 239 ARG LEU PRO GLY LEU PHE SER HIS GLN SER VAL ILE PHE SEQRES 16 A 239 GLY SER ASN GLY GLU THR LEU THR ILE ARG HIS ASP GLY SEQRES 17 A 239 MET ASP ARG ASN CYS THR MET PRO GLY ILE PHE MET ALA SEQRES 18 A 239 CYS ARG LYS VAL MET GLU LEU ASP TYR LEU VAL TYR GLY SEQRES 19 A 239 LEU GLU ASN LEU LEU HET NAP A 301 48 HET SO4 A 302 5 HET SO4 A 303 5 HET 6PC A 304 9 HET 6PC A 305 9 HET PE3 A 306 10 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETNAM 6PC PYRIDINE-2-CARBOXYLIC ACID HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN 6PC PICOLINIC ACID HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 6PC 2(C6 H5 N O2) FORMUL 7 PE3 C28 H58 O15 FORMUL 8 HOH *227(H2 O) HELIX 1 AA1 GLY A 12 THR A 23 1 12 HELIX 2 AA2 ASP A 39 HIS A 48 1 10 HELIX 3 AA3 SER A 60 SER A 71 1 12 HELIX 4 AA4 THR A 83 LYS A 98 1 16 HELIX 5 AA5 SER A 108 ALA A 122 1 15 HELIX 6 AA6 SER A 143 SER A 159 1 17 HELIX 7 AA7 ASP A 210 CYS A 213 5 4 HELIX 8 AA8 THR A 214 VAL A 225 1 12 HELIX 9 AA9 MET A 226 LEU A 228 5 3 HELIX 10 AB1 LEU A 235 LEU A 239 5 5 SHEET 1 AA1 6 LEU A 28 THR A 34 0 SHEET 2 AA1 6 ILE A 3 ASN A 8 1 N VAL A 5 O GLU A 29 SHEET 3 AA1 6 VAL A 51 ASP A 54 1 O ILE A 53 N ASN A 8 SHEET 4 AA1 6 ARG A 74 ILE A 77 1 O VAL A 76 N VAL A 52 SHEET 5 AA1 6 ALA A 101 VAL A 103 1 O ILE A 102 N ILE A 77 SHEET 6 AA1 6 LEU A 231 TYR A 233 1 O VAL A 232 N ALA A 101 SHEET 1 AA2 5 GLU A 172 LYS A 174 0 SHEET 2 AA2 5 ILE A 177 ARG A 183 -1 O ILE A 179 N GLU A 172 SHEET 3 AA2 5 ASP A 127 HIS A 134 1 N GLU A 132 O HIS A 180 SHEET 4 AA2 5 SER A 189 SER A 197 -1 O SER A 192 N ILE A 131 SHEET 5 AA2 5 GLU A 200 GLY A 208 -1 O GLY A 208 N SER A 189 CISPEP 1 ALA A 141 PRO A 142 0 -2.43 SITE 1 AC1 27 ASN A 8 ASN A 11 GLY A 12 LYS A 13 SITE 2 AC1 27 MET A 14 GLY A 35 ARG A 36 PHE A 55 SITE 3 AC1 27 THR A 56 THR A 57 SER A 60 GLY A 78 SITE 4 AC1 27 THR A 79 THR A 80 ALA A 104 PRO A 105 SITE 5 AC1 27 ASN A 106 PHE A 107 HOH A 418 HOH A 449 SITE 6 AC1 27 HOH A 450 HOH A 459 HOH A 466 HOH A 469 SITE 7 AC1 27 HOH A 471 HOH A 508 HOH A 538 SITE 1 AC2 7 LYS A 138 GLY A 144 THR A 145 HOH A 401 SITE 2 AC2 7 HOH A 421 HOH A 436 HOH A 520 SITE 1 AC3 5 GLN A 137 LYS A 138 ILE A 139 ASP A 140 SITE 2 AC3 5 HOH A 414 SITE 1 AC4 4 HIS A 135 PHE A 188 ARG A 211 HOH A 436 SITE 1 AC5 6 PRO A 105 THR A 145 LYS A 148 HOH A 461 SITE 2 AC5 6 HOH A 462 HOH A 478 SITE 1 AC6 7 MET A 133 HIS A 190 ILE A 194 THR A 201 SITE 2 AC6 7 THR A 203 ARG A 205 HOH A 481 CRYST1 73.605 78.795 84.074 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011894 0.00000