HEADER TRANSCRIPTION 02-AUG-17 5WOP TITLE HIGH RESOLUTION STRUCTURE OF MUTANT CA09-PB2CAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PB2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUTANT CA09-PB2CAP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 GENE: PB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE BASIC PROTEIN 2, TRANSCRIPTION, CAP-SNATCHING, RNA KEYWDS 2 POLYMERASE, INFLUENZA, CAP-BINDING DOMAIN, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.E.CONSTANTINIDES,R.H.GUMPPER,C.SEVERIN,M.LUO REVDAT 3 04-OCT-23 5WOP 1 REMARK REVDAT 2 14-MAR-18 5WOP 1 JRNL REVDAT 1 20-DEC-17 5WOP 0 JRNL AUTH A.CONSTANTINIDES,R.GUMPPER,C.SEVERIN,M.LUO JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE INFLUENZA A VIRUS PB2CAP JRNL TITL 2 BINDING DOMAIN ILLUMINATES THE CHANGES INDUCED BY LIGAND JRNL TITL 3 BINDING. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 122 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29497014 JRNL DOI 10.1107/S2053230X18000894 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.SEVERIN,T.ROCHA DE MOURA,Y.LIU,K.LI,X.ZHENG,M.LUO REMARK 1 TITL THE CAP-BINDING SITE OF INFLUENZA VIRUS PROTEIN PB2 AS A REMARK 1 TITL 2 DRUG TARGET REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 72 245 2016 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 26894672 REMARK 1 DOI 10.1107/S2059798316000085 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.LIU,G.MENG,M.LUO,X.ZHENG REMARK 1 TITL CRYSTALLIZATION AND X-RAY CRYSTALLOGRAPHIC ANALYSIS OF THE REMARK 1 TITL 2 CAP-BINDING DOMAIN OF INFLUENZA A VIRUS H1N1 POLYMERASE REMARK 1 TITL 3 SUBUNIT PB2 REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 69 280 2013 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23519804 REMARK 1 DOI 10.1107/S1744309113002388 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 45487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2543 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2475 ; 0.013 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3396 ; 2.239 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5721 ; 1.197 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;31.255 ;23.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;12.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.302 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2768 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 528 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5015 ; 4.137 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 219 ;26.663 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5102 ;13.344 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 761 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3705 0.1646 28.4877 REMARK 3 T TENSOR REMARK 3 T11: 0.0053 T22: 0.0118 REMARK 3 T33: 0.0150 T12: 0.0007 REMARK 3 T13: 0.0061 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0576 L22: 0.1900 REMARK 3 L33: 0.0012 L12: -0.0143 REMARK 3 L13: 0.0079 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0046 S13: 0.0009 REMARK 3 S21: 0.0013 S22: 0.0013 S23: -0.0112 REMARK 3 S31: 0.0001 S32: -0.0004 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 479 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5712 1.9374 -1.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0128 REMARK 3 T33: 0.0150 T12: 0.0004 REMARK 3 T13: 0.0051 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0463 L22: 0.2194 REMARK 3 L33: 0.0037 L12: -0.0446 REMARK 3 L13: 0.0123 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0037 S13: -0.0016 REMARK 3 S21: 0.0045 S22: 0.0031 S23: -0.0071 REMARK 3 S31: 0.0002 S32: 0.0015 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 276 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2433 0.8860 16.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0128 REMARK 3 T33: 0.0224 T12: 0.0003 REMARK 3 T13: 0.0028 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0270 REMARK 3 L33: 0.0037 L12: -0.0033 REMARK 3 L13: -0.0004 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0018 S13: -0.0013 REMARK 3 S21: 0.0026 S22: -0.0030 S23: 0.0015 REMARK 3 S31: 0.0006 S32: 0.0014 S33: 0.0024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7071 -2.5935 13.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.1962 REMARK 3 T33: 0.3925 T12: 0.0150 REMARK 3 T13: 0.2652 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.9906 L22: 2.6286 REMARK 3 L33: 3.0961 L12: -2.0073 REMARK 3 L13: 2.3846 L23: -2.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.1728 S12: 0.4226 S13: 0.1005 REMARK 3 S21: 0.0172 S22: -0.2333 S23: -0.0799 REMARK 3 S31: 0.2039 S32: 0.6587 S33: 0.0605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000228853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.86 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 72.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5EG7 REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M BIS REMARK 280 TRIS, PH 5.86, 20% PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.21450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 321 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 375 HE22 GLN A 383 1.34 REMARK 500 HZ2 LYS A 412 O HOH A 602 1.51 REMARK 500 O1 GOL A 502 O HOH A 601 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 375 HO2 GOL B 501 1556 1.31 REMARK 500 O HOH A 697 O HOH A 773 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 342 CD GLU A 342 OE1 0.105 REMARK 500 SER B 405 CB SER B 405 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 451 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 380 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 389 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 390 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 420 51.41 -113.26 REMARK 500 ASP A 437 111.67 -168.57 REMARK 500 ASP B 437 112.48 -167.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EG7 RELATED DB: PDB REMARK 900 RELATED ID: 4ENF RELATED DB: PDB DBREF 5WOP A 321 420 UNP F4MEU3 F4MEU3_9INFA 165 264 DBREF 5WOP A 424 479 UNP F4MEU3 F4MEU3_9INFA 272 327 DBREF 5WOP B 321 420 UNP F4MEU3 F4MEU3_9INFA 165 264 DBREF 5WOP B 424 479 UNP F4MEU3 F4MEU3_9INFA 272 327 SEQADV 5WOP GLY A 421 UNP F4MEU3 LINKER SEQADV 5WOP SER A 422 UNP F4MEU3 LINKER SEQADV 5WOP GLY A 423 UNP F4MEU3 LINKER SEQADV 5WOP GLY B 421 UNP F4MEU3 LINKER SEQADV 5WOP SER B 422 UNP F4MEU3 LINKER SEQADV 5WOP GLY B 423 UNP F4MEU3 LINKER SEQRES 1 A 159 SER SER PHE SER PHE GLY GLY PHE THR PHE LYS ARG THR SEQRES 2 A 159 SER GLY SER SER VAL LYS LYS GLU GLU GLU VAL LEU THR SEQRES 3 A 159 GLY ASN LEU GLN THR LEU LYS ILE ARG VAL HIS GLU GLY SEQRES 4 A 159 TYR GLU GLU PHE THR MET VAL GLY ARG ARG ALA THR ALA SEQRES 5 A 159 ILE LEU ARG LYS ALA THR ARG ARG LEU ILE GLN LEU ILE SEQRES 6 A 159 VAL SER GLY ARG ASP GLU GLN SER ILE ALA GLU ALA ILE SEQRES 7 A 159 ILE VAL ALA MET VAL PHE SER GLN GLU ASP CYS MET ILE SEQRES 8 A 159 LYS ALA VAL ARG GLY ASP LEU ASN PHE GLY SER GLY LEU SEQRES 9 A 159 ASN PRO MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP SEQRES 10 A 159 ALA LYS VAL LEU PHE GLN ASN TRP GLY ILE GLU SER ILE SEQRES 11 A 159 ASP ASN VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET SEQRES 12 A 159 THR PRO SER THR GLU MET SER LEU ARG GLY ILE ARG VAL SEQRES 13 A 159 SER LYS MET SEQRES 1 B 159 SER SER PHE SER PHE GLY GLY PHE THR PHE LYS ARG THR SEQRES 2 B 159 SER GLY SER SER VAL LYS LYS GLU GLU GLU VAL LEU THR SEQRES 3 B 159 GLY ASN LEU GLN THR LEU LYS ILE ARG VAL HIS GLU GLY SEQRES 4 B 159 TYR GLU GLU PHE THR MET VAL GLY ARG ARG ALA THR ALA SEQRES 5 B 159 ILE LEU ARG LYS ALA THR ARG ARG LEU ILE GLN LEU ILE SEQRES 6 B 159 VAL SER GLY ARG ASP GLU GLN SER ILE ALA GLU ALA ILE SEQRES 7 B 159 ILE VAL ALA MET VAL PHE SER GLN GLU ASP CYS MET ILE SEQRES 8 B 159 LYS ALA VAL ARG GLY ASP LEU ASN PHE GLY SER GLY LEU SEQRES 9 B 159 ASN PRO MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP SEQRES 10 B 159 ALA LYS VAL LEU PHE GLN ASN TRP GLY ILE GLU SER ILE SEQRES 11 B 159 ASP ASN VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET SEQRES 12 B 159 THR PRO SER THR GLU MET SER LEU ARG GLY ILE ARG VAL SEQRES 13 B 159 SER LYS MET HET GOL A 501 14 HET GOL A 502 14 HET GOL A 503 14 HET GOL B 501 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *336(H2 O) HELIX 1 AA1 ASP A 390 GLN A 406 1 17 HELIX 2 AA2 GLU A 407 LYS A 412 1 6 HELIX 3 AA3 ASN A 425 ASP A 437 1 13 HELIX 4 AA4 ALA A 438 GLY A 446 1 9 HELIX 5 AA5 ASP B 390 SER B 405 1 16 HELIX 6 AA6 GLU B 407 LYS B 412 1 6 HELIX 7 AA7 ASN B 425 ASP B 437 1 13 HELIX 8 AA8 ALA B 438 GLY B 446 1 9 SHEET 1 AA1 8 SER A 322 PHE A 325 0 SHEET 2 AA1 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 AA1 8 GLU A 361 VAL A 366 -1 O VAL A 366 N THR A 329 SHEET 4 AA1 8 ALA A 370 ALA A 377 -1 O ALA A 372 N MET A 365 SHEET 5 AA1 8 ARG A 380 GLY A 388 -1 O SER A 387 N THR A 371 SHEET 6 AA1 8 ILE A 474 SER A 477 1 O SER A 477 N VAL A 386 SHEET 7 AA1 8 MET A 456 ILE A 459 -1 N ILE A 457 O VAL A 476 SHEET 8 AA1 8 PRO A 465 SER A 466 -1 O SER A 466 N GLY A 458 SHEET 1 AA2 2 VAL A 338 LEU A 345 0 SHEET 2 AA2 2 THR A 351 GLU A 358 -1 O VAL A 356 N LYS A 340 SHEET 1 AA3 2 ILE A 447 SER A 449 0 SHEET 2 AA3 2 MET A 469 LEU A 471 -1 O SER A 470 N GLU A 448 SHEET 1 AA4 8 SER B 322 PHE B 325 0 SHEET 2 AA4 8 PHE B 328 GLY B 335 -1 O PHE B 330 N PHE B 323 SHEET 3 AA4 8 GLU B 361 VAL B 366 -1 O VAL B 366 N THR B 329 SHEET 4 AA4 8 ALA B 370 ALA B 377 -1 O ALA B 372 N MET B 365 SHEET 5 AA4 8 ARG B 380 GLY B 388 -1 O SER B 387 N THR B 371 SHEET 6 AA4 8 ILE B 474 SER B 477 1 O SER B 477 N VAL B 386 SHEET 7 AA4 8 MET B 456 ILE B 459 -1 N ILE B 457 O VAL B 476 SHEET 8 AA4 8 PRO B 465 SER B 466 -1 O SER B 466 N GLY B 458 SHEET 1 AA5 2 VAL B 338 LEU B 345 0 SHEET 2 AA5 2 THR B 351 GLU B 358 -1 O VAL B 356 N LYS B 340 SHEET 1 AA6 2 ILE B 447 SER B 449 0 SHEET 2 AA6 2 MET B 469 LEU B 471 -1 O SER B 470 N GLU B 448 SITE 1 AC1 5 ASN A 419 PHE A 420 GLY A 421 LEU A 424 SITE 2 AC1 5 HOH A 609 SITE 1 AC2 4 ARG A 415 VAL A 440 HOH A 601 HOH A 620 SITE 1 AC3 7 ASP A 451 VAL A 453 MET A 456 ARG A 475 SITE 2 AC3 7 HOH A 603 HOH A 606 HOH A 615 SITE 1 AC4 8 TYR A 360 ARG A 375 ILE A 382 ARG B 369 SITE 2 AC4 8 ASP B 390 GLN B 392 SER B 393 GLU B 396 CRYST1 36.863 72.429 61.316 90.00 103.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027127 0.000000 0.006351 0.00000 SCALE2 0.000000 0.013807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016750 0.00000