HEADER CELL ADHESION 03-AUG-17 5WOU TITLE CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER SCRIBBLE PDZ1 DOMAIN IN TITLE 2 COMPLEX WITH GUK-HOLDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LAP4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ1 DOMAIN (UNP RESIDUES 726-820); COMPND 5 SYNONYM: PROTEIN SCRIBBLE,PROTEIN SMELL-IMPAIRED; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GUK-HOLDER, ISOFORM A; COMPND 9 CHAIN: V; COMPND 10 FRAGMENT: UNP RESIDUES 1781-1788; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SCRIB, SMI, VART, CG5462; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 11 ORGANISM_COMMON: FRUIT FLY; SOURCE 12 ORGANISM_TAXID: 7227 KEYWDS SCRIBBLE, PDZ DOMAIN, GUK-HOLDER, CELL POLARITY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.CARIA,M.KVANSAKUL REVDAT 4 04-OCT-23 5WOU 1 REMARK REVDAT 3 01-JAN-20 5WOU 1 REMARK REVDAT 2 04-APR-18 5WOU 1 JRNL REVDAT 1 28-FEB-18 5WOU 0 JRNL AUTH S.CARIA,C.M.MAGTOTO,T.SAMIEI,M.PORTELA,K.Y.B.LIM,J.Y.HOW, JRNL AUTH 2 B.Z.STEWART,P.O.HUMBERT,H.E.RICHARDSON,M.KVANSAKUL JRNL TITL DROSOPHILA MELANOGASTERGUK-HOLDER INTERACTS WITH THE JRNL TITL 2 SCRIBBLED PDZ1 DOMAIN AND REGULATES EPITHELIAL DEVELOPMENT JRNL TITL 3 WITH SCRIBBLED AND DISCS LARGE. JRNL REF J. BIOL. CHEM. V. 293 4519 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29378849 JRNL DOI 10.1074/JBC.M117.817528 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 13548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1852 - 2.6492 0.99 2726 133 0.1895 0.2026 REMARK 3 2 2.6492 - 2.1029 0.98 2604 128 0.1960 0.2239 REMARK 3 3 2.1029 - 1.8371 0.98 2541 140 0.1910 0.2351 REMARK 3 4 1.8371 - 1.6692 0.97 2545 136 0.2074 0.2278 REMARK 3 5 1.6692 - 1.5495 0.96 2448 147 0.2336 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 815 REMARK 3 ANGLE : 0.680 1087 REMARK 3 CHIRALITY : 0.053 129 REMARK 3 PLANARITY : 0.004 139 REMARK 3 DIHEDRAL : 16.880 485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6906 11.4243 35.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0381 REMARK 3 T33: 0.1482 T12: -0.0036 REMARK 3 T13: 0.0201 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.2283 L22: 0.2290 REMARK 3 L33: 0.6177 L12: 0.0185 REMARK 3 L13: 0.2452 L23: 0.0982 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0546 S13: -0.1504 REMARK 3 S21: 0.0058 S22: 0.0123 S23: -0.0569 REMARK 3 S31: 0.1671 S32: 0.0709 S33: -0.0408 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4412 25.6117 31.4837 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0873 REMARK 3 T33: 0.0710 T12: 0.0099 REMARK 3 T13: 0.0072 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.0414 L22: 0.1586 REMARK 3 L33: 0.0472 L12: -0.0627 REMARK 3 L13: 0.0222 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.1014 S13: 0.0147 REMARK 3 S21: 0.0246 S22: -0.0452 S23: -0.0239 REMARK 3 S31: 0.0138 S32: -0.0147 S33: -0.0080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3459 18.2774 31.7183 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0903 REMARK 3 T33: 0.0746 T12: -0.0039 REMARK 3 T13: 0.0071 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.0593 L22: 0.0314 REMARK 3 L33: 0.0024 L12: -0.0385 REMARK 3 L13: 0.0229 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0073 S13: 0.0199 REMARK 3 S21: 0.0319 S22: -0.0099 S23: -0.0647 REMARK 3 S31: -0.0696 S32: 0.0408 S33: -0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0351 23.8137 43.4805 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.0896 REMARK 3 T33: 0.0756 T12: -0.0073 REMARK 3 T13: 0.0058 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.0351 REMARK 3 L33: 0.0138 L12: -0.0036 REMARK 3 L13: -0.0029 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0029 S13: -0.0113 REMARK 3 S21: 0.0615 S22: 0.0604 S23: 0.1248 REMARK 3 S31: 0.0662 S32: -0.0488 S33: -0.0013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9403 29.7815 41.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.0682 REMARK 3 T33: 0.0717 T12: 0.0085 REMARK 3 T13: 0.0124 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1038 L22: 0.0018 REMARK 3 L33: 0.0605 L12: -0.0100 REMARK 3 L13: -0.0487 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.1049 S13: 0.1397 REMARK 3 S21: -0.0043 S22: 0.0140 S23: -0.0371 REMARK 3 S31: 0.0052 S32: 0.1248 S33: -0.0028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5415 14.2178 34.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0818 REMARK 3 T33: 0.0818 T12: -0.0114 REMARK 3 T13: 0.0036 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.0419 L22: 0.3286 REMARK 3 L33: 0.1254 L12: -0.0913 REMARK 3 L13: -0.0048 L23: -0.1036 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: -0.0120 S13: -0.1402 REMARK 3 S21: 0.1515 S22: 0.0671 S23: 0.1652 REMARK 3 S31: 0.0512 S32: -0.0865 S33: 0.1059 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 98 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3320 32.9269 30.8262 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.1031 REMARK 3 T33: 0.0866 T12: 0.0083 REMARK 3 T13: 0.0007 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.0612 L22: 0.1537 REMARK 3 L33: 0.0834 L12: -0.0662 REMARK 3 L13: 0.0407 L23: -0.1114 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: -0.0375 S13: -0.0109 REMARK 3 S21: 0.0903 S22: -0.0767 S23: 0.0556 REMARK 3 S31: 0.0674 S32: -0.0658 S33: -0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 31.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (V/V) PEG 4000, 0.2 M SODIUM REMARK 280 ACETATE AND 0.1M TRIS CHLORIDE PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.10950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.10950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.21450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.94200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.21450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.94200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.10950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.21450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.94200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.10950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.21450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 26.94200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 221 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 242 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 277 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 326 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 201 O HOH A 252 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -169.82 -125.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 108 DBREF 5WOU A 1 95 UNP Q7KRY7 LAP4_DROME 726 820 DBREF 5WOU V 98 105 UNP Q9VE13 Q9VE13_DROME 1781 1788 SEQADV 5WOU GLY A -4 UNP Q7KRY7 EXPRESSION TAG SEQADV 5WOU PRO A -3 UNP Q7KRY7 EXPRESSION TAG SEQADV 5WOU LEU A -2 UNP Q7KRY7 EXPRESSION TAG SEQADV 5WOU GLY A -1 UNP Q7KRY7 EXPRESSION TAG SEQADV 5WOU SER A 0 UNP Q7KRY7 EXPRESSION TAG SEQRES 1 A 100 GLY PRO LEU GLY SER ARG LEU GLU GLN TYR GLU ILE HIS SEQRES 2 A 100 ILE GLU ARG THR ALA ALA GLY LEU GLY LEU SER ILE ALA SEQRES 3 A 100 GLY GLY LYS GLY SER THR PRO PHE LYS GLY ASP ASP ASP SEQRES 4 A 100 GLY ILE PHE ILE SER ARG VAL THR GLU ALA GLY PRO ALA SEQRES 5 A 100 ASP LEU ALA GLY LEU LYS VAL GLY ASP LYS VAL ILE LYS SEQRES 6 A 100 VAL ASN GLY ILE VAL VAL VAL ASP ALA ASP HIS TYR GLN SEQRES 7 A 100 ALA VAL GLN VAL LEU LYS ALA CYS GLY ALA VAL LEU VAL SEQRES 8 A 100 LEU VAL VAL GLN ARG GLU VAL THR ARG SEQRES 1 V 8 LEU PRO SER PHE GLU THR ALA LEU HET EDO A 101 10 HET EDO A 102 10 HET EDO A 103 10 HET EDO A 104 10 HET EDO A 105 10 HET EDO A 106 10 HET EDO A 107 10 HET PGE A 108 24 HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 PGE C6 H14 O4 FORMUL 11 HOH *134(H2 O) HELIX 1 AA1 GLY A 45 GLY A 51 1 7 HELIX 2 AA2 ASP A 70 CYS A 81 1 12 SHEET 1 AA1 4 ARG A 1 GLU A 10 0 SHEET 2 AA1 4 VAL A 84 VAL A 93 -1 O LEU A 85 N ILE A 9 SHEET 3 AA1 4 LYS A 57 VAL A 61 -1 N ILE A 59 O VAL A 88 SHEET 4 AA1 4 ILE A 64 VAL A 65 -1 O ILE A 64 N VAL A 61 SHEET 1 AA2 3 ILE A 36 VAL A 41 0 SHEET 2 AA2 3 LEU A 18 GLY A 22 -1 N ALA A 21 O PHE A 37 SHEET 3 AA2 3 GLU V 102 ALA V 104 -1 O THR V 103 N ILE A 20 SSBOND 1 CYS A 81 CYS A 81 1555 4566 2.04 SITE 1 AC1 7 ASN A 62 ALA A 80 CYS A 81 GLY A 82 SITE 2 AC1 7 HOH A 206 HOH A 217 HOH A 259 SITE 1 AC2 7 TYR A 5 ARG A 91 VAL A 93 HOH A 219 SITE 2 AC2 7 HOH A 257 HOH A 282 LEU V 98 SITE 1 AC3 9 LYS A 24 ASP A 34 GLY A 35 VAL A 67 SITE 2 AC3 9 ASP A 68 ALA A 69 HOH A 239 HOH A 249 SITE 3 AC3 9 HOH A 269 SITE 1 AC4 8 LEU A 2 LYS A 30 GLY A 55 LYS A 57 SITE 2 AC4 8 GLN A 90 ARG A 91 HOH A 238 HOH A 278 SITE 1 AC5 4 TYR A 72 PGE A 108 HOH A 293 PHE V 101 SITE 1 AC6 5 LEU A 2 LYS A 79 HOH A 215 HOH A 253 SITE 2 AC6 5 THR V 103 SITE 1 AC7 5 THR A 12 ASP A 32 ASP A 33 HOH A 210 SITE 2 AC7 5 HOH A 235 SITE 1 AC8 9 HIS A 8 GLY A 23 LYS A 24 ASP A 70 SITE 2 AC8 9 HIS A 71 TYR A 72 EDO A 105 HOH A 247 SITE 3 AC8 9 HOH A 276 CRYST1 36.429 53.884 94.219 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010614 0.00000