HEADER LIGASE 03-AUG-17 5WP0 TITLE CRYSTAL STRUCTURE OF NAD SYNTHETASE NADE FROM VIBRIO FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI (STRAIN ATCC 700601 / ES114); SOURCE 3 ORGANISM_TAXID: 312309; SOURCE 4 STRAIN: ATCC 700601 / ES114; SOURCE 5 GENE: NADE, VF_A0602; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-GOLD MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, ALPHA BETA, 3-LAYER(ABA) SANDWICH, ROSSMANN KEYWDS 3 FOLD, NAD SYNTHETASE, LIGASE, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 4 INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,S.GRIMSHAW,A.SAVCHENKO,W.F.ANDERSON,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 04-OCT-23 5WP0 1 REMARK REVDAT 3 11-DEC-19 5WP0 1 REMARK REVDAT 2 27-SEP-17 5WP0 1 REMARK REVDAT 1 16-AUG-17 5WP0 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF NAD SYNTHETASE NADE FROM VIBRIO JRNL TITL 2 FISCHERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2733 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 17373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8683 - 4.7001 0.99 2833 155 0.1684 0.2020 REMARK 3 2 4.7001 - 3.7347 1.00 2804 140 0.1638 0.2153 REMARK 3 3 3.7347 - 3.2638 1.00 2796 143 0.2032 0.2961 REMARK 3 4 3.2638 - 2.9659 1.00 2805 146 0.2455 0.3269 REMARK 3 5 2.9659 - 2.7536 0.99 2763 144 0.2644 0.3669 REMARK 3 6 2.7536 - 2.5914 0.89 2508 136 0.2830 0.3330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4188 REMARK 3 ANGLE : 0.453 5649 REMARK 3 CHIRALITY : 0.038 645 REMARK 3 PLANARITY : 0.003 741 REMARK 3 DIHEDRAL : 22.018 1582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -2:3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9540 4.5222 -19.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.6800 T22: 0.5439 REMARK 3 T33: 0.9127 T12: 0.0383 REMARK 3 T13: 0.1328 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 5.9895 L22: 2.2554 REMARK 3 L33: 2.7875 L12: 0.6278 REMARK 3 L13: 3.5537 L23: 1.5622 REMARK 3 S TENSOR REMARK 3 S11: -0.7466 S12: 0.1700 S13: 1.1607 REMARK 3 S21: -1.5305 S22: -0.5301 S23: -0.2457 REMARK 3 S31: 0.2451 S32: 0.2074 S33: 1.1823 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7670 0.8988 -22.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.3721 T22: 0.2707 REMARK 3 T33: 0.3440 T12: 0.0449 REMARK 3 T13: 0.0202 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.3374 L22: 2.3757 REMARK 3 L33: 2.3900 L12: -0.7503 REMARK 3 L13: 0.6628 L23: 0.2611 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: 0.2672 S13: 0.1088 REMARK 3 S21: -0.3271 S22: -0.0506 S23: 0.1497 REMARK 3 S31: -0.2857 S32: -0.2425 S33: -0.0884 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 86:129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7173 -8.6096 -2.1393 REMARK 3 T TENSOR REMARK 3 T11: 0.4571 T22: 0.5214 REMARK 3 T33: 0.3752 T12: -0.0123 REMARK 3 T13: 0.0120 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 6.1234 L22: 7.2172 REMARK 3 L33: 5.8674 L12: -5.6081 REMARK 3 L13: 4.4979 L23: -6.4118 REMARK 3 S TENSOR REMARK 3 S11: -0.3358 S12: -0.5673 S13: 0.5063 REMARK 3 S21: 1.1210 S22: 0.1116 S23: 0.2006 REMARK 3 S31: -0.5622 S32: -0.0772 S33: 0.1756 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 130:137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4204 -12.5895 8.4439 REMARK 3 T TENSOR REMARK 3 T11: 1.4443 T22: 1.0919 REMARK 3 T33: 0.6635 T12: -0.0281 REMARK 3 T13: -0.0503 T23: -0.2601 REMARK 3 L TENSOR REMARK 3 L11: 8.2167 L22: 7.2028 REMARK 3 L33: 8.0549 L12: 7.6556 REMARK 3 L13: 0.3131 L23: -0.4454 REMARK 3 S TENSOR REMARK 3 S11: 0.7679 S12: -1.7154 S13: 0.4049 REMARK 3 S21: 2.9880 S22: -0.2356 S23: -0.8996 REMARK 3 S31: 1.1808 S32: -0.1480 S33: -0.5921 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 138:276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1088 -1.1359 -13.5215 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.3240 REMARK 3 T33: 0.3550 T12: -0.0100 REMARK 3 T13: 0.0085 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 0.4848 L22: 2.8978 REMARK 3 L33: 0.8546 L12: -0.2788 REMARK 3 L13: -0.1146 L23: -0.0935 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: -0.1221 S13: 0.2514 REMARK 3 S21: 0.2905 S22: -0.0286 S23: -0.2730 REMARK 3 S31: -0.1963 S32: 0.0356 S33: -0.1334 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID -2:82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8801 -28.9237 -15.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.3073 T22: 0.2852 REMARK 3 T33: 0.2937 T12: -0.0006 REMARK 3 T13: 0.0009 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 2.3140 L22: 1.3069 REMARK 3 L33: 0.4782 L12: -0.2383 REMARK 3 L13: 0.0219 L23: 0.3156 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.1551 S13: -0.0160 REMARK 3 S21: -0.0316 S22: -0.0026 S23: -0.1068 REMARK 3 S31: 0.0849 S32: 0.0582 S33: -0.0219 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 83:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6907 -38.6882 -5.6086 REMARK 3 T TENSOR REMARK 3 T11: 1.3720 T22: 1.5015 REMARK 3 T33: 0.6861 T12: -0.0566 REMARK 3 T13: 0.3337 T23: -0.4143 REMARK 3 L TENSOR REMARK 3 L11: 4.7842 L22: 1.3420 REMARK 3 L33: 0.6281 L12: 2.5324 REMARK 3 L13: -1.7333 L23: -0.9185 REMARK 3 S TENSOR REMARK 3 S11: -0.7063 S12: 0.5768 S13: -1.7307 REMARK 3 S21: -1.7488 S22: -0.9118 S23: 0.0327 REMARK 3 S31: -0.5664 S32: -0.0989 S33: 1.0739 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 90:128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1154 -26.0284 -5.3156 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.3077 REMARK 3 T33: 0.3332 T12: -0.0899 REMARK 3 T13: 0.0762 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 6.9471 L22: 4.7604 REMARK 3 L33: 2.7406 L12: -3.8114 REMARK 3 L13: -0.0314 L23: -0.7505 REMARK 3 S TENSOR REMARK 3 S11: -0.1676 S12: -0.2844 S13: -0.3706 REMARK 3 S21: 0.3171 S22: 0.1548 S23: 0.5000 REMARK 3 S31: 0.0662 S32: -0.2469 S33: -0.0114 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 129:138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5602 -22.1421 -17.0087 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.4475 REMARK 3 T33: 0.6207 T12: -0.0205 REMARK 3 T13: -0.1040 T23: 0.1502 REMARK 3 L TENSOR REMARK 3 L11: 1.0118 L22: 8.1396 REMARK 3 L33: 9.2723 L12: 1.7881 REMARK 3 L13: -1.8541 L23: 1.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.4607 S12: 0.3538 S13: 0.6070 REMARK 3 S21: -0.1559 S22: 0.5817 S23: -0.2129 REMARK 3 S31: 0.6911 S32: 0.0684 S33: -0.1684 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 139:276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7610 -27.9174 -22.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.3210 REMARK 3 T33: 0.3219 T12: 0.0040 REMARK 3 T13: -0.0252 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.6913 L22: 1.5061 REMARK 3 L33: 0.8812 L12: -0.2990 REMARK 3 L13: -0.7087 L23: 0.7212 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.0810 S13: 0.0145 REMARK 3 S21: -0.0030 S22: -0.0532 S23: 0.0894 REMARK 3 S31: -0.0401 S32: -0.1903 S33: -0.0099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M HEPES PH 7.5, 21% REMARK 280 PEG 3350, 0.5 MM CACL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.94350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 215 REMARK 465 PRO A 216 REMARK 465 THR A 217 REMARK 465 ALA A 218 REMARK 465 ASP A 219 REMARK 465 LEU A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 LEU A 223 REMARK 465 ALA A 224 REMARK 465 PRO A 225 REMARK 465 GLN A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 ASP A 231 REMARK 465 ALA A 232 REMARK 465 LEU A 233 REMARK 465 GLN B 226 REMARK 465 LYS B 227 REMARK 465 ALA B 228 REMARK 465 ASP B 229 REMARK 465 GLU B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A -2 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN B 99 O HOH B 301 2.18 REMARK 500 NH1 ARG A 199 O LYS A 214 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 40.28 -97.17 REMARK 500 GLN A 99 74.31 53.10 REMARK 500 LEU A 187 136.03 -170.49 REMARK 500 ILE A 249 -168.28 -113.35 REMARK 500 GLN B 85 96.90 -63.23 REMARK 500 ASP B 87 70.04 50.43 REMARK 500 THR B 131 34.87 -83.54 REMARK 500 THR B 217 -169.21 -123.90 REMARK 500 ALA B 218 37.00 -82.09 REMARK 500 LEU B 220 70.69 56.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP07110 RELATED DB: TARGETTRACK DBREF 5WP0 A 1 276 UNP Q5DZX4 NADE_VIBF1 1 276 DBREF 5WP0 B 1 276 UNP Q5DZX4 NADE_VIBF1 1 276 SEQADV 5WP0 PHE A -2 UNP Q5DZX4 EXPRESSION TAG SEQADV 5WP0 GLN A -1 UNP Q5DZX4 EXPRESSION TAG SEQADV 5WP0 GLY A 0 UNP Q5DZX4 EXPRESSION TAG SEQADV 5WP0 PHE B -2 UNP Q5DZX4 EXPRESSION TAG SEQADV 5WP0 GLN B -1 UNP Q5DZX4 EXPRESSION TAG SEQADV 5WP0 GLY B 0 UNP Q5DZX4 EXPRESSION TAG SEQRES 1 A 279 PHE GLN GLY MET GLN GLN GLN ILE VAL GLU GLU MET LYS SEQRES 2 A 279 VAL LYS VAL SER ILE ASP PRO VAL GLU GLU ILE LYS LYS SEQRES 3 A 279 ARG VAL ASP PHE ILE LYS GLY LYS LEU LEU GLU ALA HIS SEQRES 4 A 279 CYS LYS SER LEU ILE LEU GLY ILE SER GLY GLY VAL ASP SEQRES 5 A 279 SER THR THR CYS GLY ARG LEU ALA GLN LEU ALA VAL ASN SEQRES 6 A 279 GLU LEU ASN LEU GLU THR GLN SER SER ASP TYR GLN PHE SEQRES 7 A 279 ILE ALA VAL ARG LEU PRO TYR GLY ILE GLN GLN ASP GLU SEQRES 8 A 279 ASP GLU ALA GLN LEU ALA LEU GLN PHE ILE GLN PRO THR SEQRES 9 A 279 HIS SER ILE SER ILE ASN ILE LYS ASN GLY VAL ASP GLY SEQRES 10 A 279 LEU HIS SER ALA ASN HIS ILE ALA LEU LYS ASP THR GLY SEQRES 11 A 279 LEU LEU PRO THR ASP SER ALA LYS ILE ASP PHE VAL LYS SEQRES 12 A 279 GLY ASN VAL LYS ALA ARG ALA ARG MET ILE ALA GLN TYR SEQRES 13 A 279 GLU VAL ALA GLY TYR VAL GLY GLY LEU VAL LEU GLY THR SEQRES 14 A 279 ASP HIS SER ALA GLU ASN ILE THR GLY PHE TYR THR LYS SEQRES 15 A 279 PHE GLY ASP GLY ALA CYS ASP LEU ALA PRO LEU PHE GLY SEQRES 16 A 279 LEU ASN LYS ARG GLN VAL ARG GLU VAL ALA ALA GLN LEU SEQRES 17 A 279 GLY ALA PRO GLU GLN LEU VAL LYS LYS VAL PRO THR ALA SEQRES 18 A 279 ASP LEU GLU GLU LEU ALA PRO GLN LYS ALA ASP GLU ASP SEQRES 19 A 279 ALA LEU SER VAL SER TYR ASP GLN ILE ASP ASP PHE LEU SEQRES 20 A 279 GLU GLY LYS LYS ILE ASP ALA ASP ALA GLU ASP ARG LEU SEQRES 21 A 279 ILE LYS ILE TYR GLN MET SER GLN HIS LYS ARG LYS PRO SEQRES 22 A 279 ILE PRO THR ILE TYR ASP SEQRES 1 B 279 PHE GLN GLY MET GLN GLN GLN ILE VAL GLU GLU MET LYS SEQRES 2 B 279 VAL LYS VAL SER ILE ASP PRO VAL GLU GLU ILE LYS LYS SEQRES 3 B 279 ARG VAL ASP PHE ILE LYS GLY LYS LEU LEU GLU ALA HIS SEQRES 4 B 279 CYS LYS SER LEU ILE LEU GLY ILE SER GLY GLY VAL ASP SEQRES 5 B 279 SER THR THR CYS GLY ARG LEU ALA GLN LEU ALA VAL ASN SEQRES 6 B 279 GLU LEU ASN LEU GLU THR GLN SER SER ASP TYR GLN PHE SEQRES 7 B 279 ILE ALA VAL ARG LEU PRO TYR GLY ILE GLN GLN ASP GLU SEQRES 8 B 279 ASP GLU ALA GLN LEU ALA LEU GLN PHE ILE GLN PRO THR SEQRES 9 B 279 HIS SER ILE SER ILE ASN ILE LYS ASN GLY VAL ASP GLY SEQRES 10 B 279 LEU HIS SER ALA ASN HIS ILE ALA LEU LYS ASP THR GLY SEQRES 11 B 279 LEU LEU PRO THR ASP SER ALA LYS ILE ASP PHE VAL LYS SEQRES 12 B 279 GLY ASN VAL LYS ALA ARG ALA ARG MET ILE ALA GLN TYR SEQRES 13 B 279 GLU VAL ALA GLY TYR VAL GLY GLY LEU VAL LEU GLY THR SEQRES 14 B 279 ASP HIS SER ALA GLU ASN ILE THR GLY PHE TYR THR LYS SEQRES 15 B 279 PHE GLY ASP GLY ALA CYS ASP LEU ALA PRO LEU PHE GLY SEQRES 16 B 279 LEU ASN LYS ARG GLN VAL ARG GLU VAL ALA ALA GLN LEU SEQRES 17 B 279 GLY ALA PRO GLU GLN LEU VAL LYS LYS VAL PRO THR ALA SEQRES 18 B 279 ASP LEU GLU GLU LEU ALA PRO GLN LYS ALA ASP GLU ASP SEQRES 19 B 279 ALA LEU SER VAL SER TYR ASP GLN ILE ASP ASP PHE LEU SEQRES 20 B 279 GLU GLY LYS LYS ILE ASP ALA ASP ALA GLU ASP ARG LEU SEQRES 21 B 279 ILE LYS ILE TYR GLN MET SER GLN HIS LYS ARG LYS PRO SEQRES 22 B 279 ILE PRO THR ILE TYR ASP FORMUL 3 HOH *191(H2 O) HELIX 1 AA1 PHE A -2 LYS A 10 1 13 HELIX 2 AA2 ASP A 16 ALA A 35 1 20 HELIX 3 AA3 GLY A 47 THR A 68 1 22 HELIX 4 AA4 ASP A 87 ILE A 98 1 12 HELIX 5 AA5 ILE A 108 LEU A 123 1 16 HELIX 6 AA6 ASP A 132 GLY A 160 1 29 HELIX 7 AA7 HIS A 168 ILE A 173 1 6 HELIX 8 AA8 ASN A 194 LEU A 205 1 12 HELIX 9 AA9 PRO A 208 LYS A 214 1 7 HELIX 10 AB1 SER A 236 GLU A 245 1 10 HELIX 11 AB2 ASP A 250 SER A 264 1 15 HELIX 12 AB3 SER A 264 LYS A 269 1 6 HELIX 13 AB4 MET B 1 LYS B 10 1 10 HELIX 14 AB5 ASP B 16 ALA B 35 1 20 HELIX 15 AB6 GLY B 47 THR B 68 1 22 HELIX 16 AB7 ASP B 87 ILE B 98 1 12 HELIX 17 AB8 ILE B 108 LYS B 124 1 17 HELIX 18 AB9 ASP B 132 GLY B 160 1 29 HELIX 19 AC1 HIS B 168 GLY B 175 1 8 HELIX 20 AC2 ASN B 194 GLY B 206 1 13 HELIX 21 AC3 PRO B 208 LYS B 213 1 6 HELIX 22 AC4 SER B 236 GLU B 245 1 10 HELIX 23 AC5 ASP B 250 MET B 263 1 14 HELIX 24 AC6 SER B 264 LYS B 269 1 6 SHEET 1 AA1 4 HIS A 102 SER A 105 0 SHEET 2 AA1 4 GLN A 74 ARG A 79 1 N ALA A 77 O HIS A 102 SHEET 3 AA1 4 SER A 39 ILE A 44 1 N LEU A 40 O ILE A 76 SHEET 4 AA1 4 LEU A 162 VAL A 163 1 O LEU A 162 N ILE A 41 SHEET 1 AA2 4 HIS B 102 SER B 105 0 SHEET 2 AA2 4 GLN B 74 ARG B 79 1 N ARG B 79 O ILE B 104 SHEET 3 AA2 4 SER B 39 GLY B 43 1 N LEU B 40 O ILE B 76 SHEET 4 AA2 4 GLY B 161 VAL B 163 1 O LEU B 162 N ILE B 41 CRYST1 49.252 115.887 55.086 90.00 112.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020304 0.000000 0.008379 0.00000 SCALE2 0.000000 0.008629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019639 0.00000