HEADER OXIDOREDUCTASE 03-AUG-17 5WP2 TITLE 1.44 ANGSTROM CRYSTAL STRUCTURE OF CYP121 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH SUBSTRATE AND CN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOCYCLOSIN SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450 121, CYTOCHROME P450 MT2; COMPND 5 EC: 1.14.21.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYP121, MT2336; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, P450, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FIELDING,K.DORNEVIL,A.LIU REVDAT 3 04-OCT-23 5WP2 1 HETSYN REVDAT 2 01-JAN-20 5WP2 1 REMARK REVDAT 1 30-MAY-18 5WP2 0 JRNL AUTH A.J.FIELDING,K.DORNEVIL,L.MA,I.DAVIS,A.LIU JRNL TITL PROBING LIGAND EXCHANGE IN THE P450 ENZYME CYP121 FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS: DYNAMIC EQUILIBRIUM OF THE JRNL TITL 3 DISTAL HEME LIGAND AS A FUNCTION OF PH AND TEMPERATURE. JRNL REF J. AM. CHEM. SOC. V. 139 17484 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 29090577 JRNL DOI 10.1021/JACS.7B08911 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 86485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5838 - 4.4616 1.00 3087 158 0.1642 0.1520 REMARK 3 2 4.4616 - 3.5457 1.00 2866 156 0.1390 0.1274 REMARK 3 3 3.5457 - 3.0988 1.00 2845 149 0.1616 0.1890 REMARK 3 4 3.0988 - 2.8161 1.00 2808 144 0.1760 0.1845 REMARK 3 5 2.8161 - 2.6145 1.00 2803 128 0.1826 0.2085 REMARK 3 6 2.6145 - 2.4606 1.00 2768 153 0.1774 0.1858 REMARK 3 7 2.4606 - 2.3375 1.00 2773 136 0.1724 0.1844 REMARK 3 8 2.3375 - 2.2358 1.00 2760 133 0.1742 0.1912 REMARK 3 9 2.2358 - 2.1498 1.00 2740 157 0.1784 0.2146 REMARK 3 10 2.1498 - 2.0757 1.00 2725 157 0.1782 0.2100 REMARK 3 11 2.0757 - 2.0108 1.00 2732 139 0.1881 0.2116 REMARK 3 12 2.0108 - 1.9534 1.00 2691 158 0.1896 0.2173 REMARK 3 13 1.9534 - 1.9020 1.00 2709 158 0.1918 0.2198 REMARK 3 14 1.9020 - 1.8556 1.00 2687 164 0.1986 0.2413 REMARK 3 15 1.8556 - 1.8134 1.00 2734 137 0.2072 0.2455 REMARK 3 16 1.8134 - 1.7749 1.00 2685 146 0.2052 0.2530 REMARK 3 17 1.7749 - 1.7394 1.00 2759 125 0.2046 0.2403 REMARK 3 18 1.7394 - 1.7066 1.00 2691 145 0.2076 0.2442 REMARK 3 19 1.7066 - 1.6761 1.00 2708 147 0.2142 0.2569 REMARK 3 20 1.6761 - 1.6477 1.00 2677 142 0.2196 0.2533 REMARK 3 21 1.6477 - 1.6211 1.00 2679 157 0.2226 0.2567 REMARK 3 22 1.6211 - 1.5962 1.00 2714 151 0.2205 0.2685 REMARK 3 23 1.5962 - 1.5727 1.00 2667 151 0.2238 0.2657 REMARK 3 24 1.5727 - 1.5506 1.00 2720 119 0.2179 0.2398 REMARK 3 25 1.5506 - 1.5296 1.00 2688 148 0.2366 0.2523 REMARK 3 26 1.5296 - 1.5098 1.00 2691 140 0.2298 0.2577 REMARK 3 27 1.5098 - 1.4909 1.00 2698 150 0.2420 0.2927 REMARK 3 28 1.4909 - 1.4729 1.00 2648 135 0.2430 0.2998 REMARK 3 29 1.4729 - 1.4558 1.00 2740 126 0.2541 0.3039 REMARK 3 30 1.4558 - 1.4395 1.00 2654 129 0.2677 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3307 REMARK 3 ANGLE : 0.906 4526 REMARK 3 CHIRALITY : 0.075 521 REMARK 3 PLANARITY : 0.006 581 REMARK 3 DIHEDRAL : 23.419 1254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000227037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 17.20 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1N40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6, 2 M AMMONIUM REMARK 280 SULFATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.74333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.87167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.80750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.93583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 219.67917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.74333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.87167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.93583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.80750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 219.67917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 880 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 896 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 942 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1085 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 N CA CB OG1 CG2 REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 LYS A 96 CE NZ REMARK 470 LYS A 100 NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 127 CD OE1 OE2 REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LYS A 262 CE NZ REMARK 470 LYS A 364 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 805 O HOH A 931 1.82 REMARK 500 NH1 ARG A 95 O HOH A 501 1.82 REMARK 500 OE1 GLU A 56 O HOH A 502 1.85 REMARK 500 O4 SO4 A 406 O HOH A 503 1.92 REMARK 500 OE1 GLU A 29 O HOH A 504 1.94 REMARK 500 FE HEM A 401 C CYN A 403 1.96 REMARK 500 O HOH A 839 O HOH A 1032 1.96 REMARK 500 O HOH A 558 O HOH A 885 1.98 REMARK 500 O HOH A 536 O HOH A 892 1.99 REMARK 500 O HOH A 877 O HOH A 972 2.00 REMARK 500 O HOH A 874 O HOH A 995 2.04 REMARK 500 O HOH A 616 O HOH A 650 2.06 REMARK 500 O HOH A 928 O HOH A 1041 2.06 REMARK 500 O HOH A 879 O HOH A 1046 2.07 REMARK 500 O HOH A 853 O HOH A 1040 2.08 REMARK 500 O HOH A 912 O HOH A 1063 2.08 REMARK 500 O HOH A 616 O HOH A 883 2.09 REMARK 500 O HOH A 899 O HOH A 1007 2.10 REMARK 500 O HOH A 934 O HOH A 1083 2.10 REMARK 500 O HOH A 553 O HOH A 794 2.11 REMARK 500 O HOH A 878 O HOH A 913 2.15 REMARK 500 O HOH A 707 O HOH A 943 2.15 REMARK 500 O HOH A 1003 O HOH A 1079 2.16 REMARK 500 O HOH A 633 O HOH A 911 2.16 REMARK 500 O4 SO4 A 405 O HOH A 505 2.18 REMARK 500 OE2 GLU A 271 NE ARG A 352 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 770 O HOH A 901 5555 1.73 REMARK 500 O HOH A 864 O HOH A 877 6554 1.90 REMARK 500 O HOH A 782 O HOH A 1044 10555 1.99 REMARK 500 O HOH A 972 O HOH A 1048 5555 2.03 REMARK 500 O HOH A 954 O HOH A 954 12564 2.07 REMARK 500 O HOH A 861 O HOH A 917 5555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 72.97 -154.33 REMARK 500 ASN A 84 30.96 -96.25 REMARK 500 PHE A 137 -70.40 -141.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1088 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1089 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1090 DISTANCE = 6.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 345 SG REMARK 620 2 HEM A 401 NA 95.7 REMARK 620 3 HEM A 401 NB 87.3 88.9 REMARK 620 4 HEM A 401 NC 84.0 179.7 90.9 REMARK 620 5 HEM A 401 ND 92.1 91.0 179.4 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YTT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 DBREF 5WP2 A 2 396 UNP P9WPP6 CP121_MYCTO 2 396 SEQRES 1 A 395 THR ALA THR VAL LEU LEU GLU VAL PRO PHE SER ALA ARG SEQRES 2 A 395 GLY ASP ARG ILE PRO ASP ALA VAL ALA GLU LEU ARG THR SEQRES 3 A 395 ARG GLU PRO ILE ARG LYS VAL ARG THR ILE THR GLY ALA SEQRES 4 A 395 GLU ALA TRP LEU VAL SER SER TYR ALA LEU CYS THR GLN SEQRES 5 A 395 VAL LEU GLU ASP ARG ARG PHE SER MET LYS GLU THR ALA SEQRES 6 A 395 ALA ALA GLY ALA PRO ARG LEU ASN ALA LEU THR VAL PRO SEQRES 7 A 395 PRO GLU VAL VAL ASN ASN MET GLY ASN ILE ALA ASP ALA SEQRES 8 A 395 GLY LEU ARG LYS ALA VAL MET LYS ALA ILE THR PRO LYS SEQRES 9 A 395 ALA PRO GLY LEU GLU GLN PHE LEU ARG ASP THR ALA ASN SEQRES 10 A 395 SER LEU LEU ASP ASN LEU ILE THR GLU GLY ALA PRO ALA SEQRES 11 A 395 ASP LEU ARG ASN ASP PHE ALA ASP PRO LEU ALA THR ALA SEQRES 12 A 395 LEU HIS CYS LYS VAL LEU GLY ILE PRO GLN GLU ASP GLY SEQRES 13 A 395 PRO LYS LEU PHE ARG SER LEU SER ILE ALA PHE MET SER SEQRES 14 A 395 SER ALA ASP PRO ILE PRO ALA ALA LYS ILE ASN TRP ASP SEQRES 15 A 395 ARG ASP ILE GLU TYR MET ALA GLY ILE LEU GLU ASN PRO SEQRES 16 A 395 ASN ILE THR THR GLY LEU MET GLY GLU LEU SER ARG LEU SEQRES 17 A 395 ARG LYS ASP PRO ALA TYR SER HIS VAL SER ASP GLU LEU SEQRES 18 A 395 PHE ALA THR ILE GLY VAL THR PHE PHE GLY ALA GLY VAL SEQRES 19 A 395 ILE SER THR GLY SER PHE LEU THR THR ALA LEU ILE SER SEQRES 20 A 395 LEU ILE GLN ARG PRO GLN LEU ARG ASN LEU LEU HIS GLU SEQRES 21 A 395 LYS PRO GLU LEU ILE PRO ALA GLY VAL GLU GLU LEU LEU SEQRES 22 A 395 ARG ILE ASN LEU SER PHE ALA ASP GLY LEU PRO ARG LEU SEQRES 23 A 395 ALA THR ALA ASP ILE GLN VAL GLY ASP VAL LEU VAL ARG SEQRES 24 A 395 LYS GLY GLU LEU VAL LEU VAL LEU LEU GLU GLY ALA ASN SEQRES 25 A 395 PHE ASP PRO GLU HIS PHE PRO ASN PRO GLY SER ILE GLU SEQRES 26 A 395 LEU ASP ARG PRO ASN PRO THR SER HIS LEU ALA PHE GLY SEQRES 27 A 395 ARG GLY GLN HIS PHE CYS PRO GLY SER ALA LEU GLY ARG SEQRES 28 A 395 ARG HIS ALA GLN ILE GLY ILE GLU ALA LEU LEU LYS LYS SEQRES 29 A 395 MET PRO GLY VAL ASP LEU ALA VAL PRO ILE ASP GLN LEU SEQRES 30 A 395 VAL TRP ARG THR ARG PHE GLN ARG ARG ILE PRO GLU ARG SEQRES 31 A 395 LEU PRO VAL LEU TRP HET HEM A 401 73 HET YTT A 402 42 HET CYN A 403 2 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM YTT (3S,6S)-3,6-BIS(4-HYDROXYBENZYL)PIPERAZINE-2,5-DIONE HETNAM CYN CYANIDE ION HETNAM SO4 SULFATE ION HETSYN HEM HEME HETSYN YTT CYCLO(TYROSYL-TYROSYL); CYCLO(TYR-TYR) FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 YTT C18 H18 N2 O4 FORMUL 4 CYN C N 1- FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *590(H2 O) HELIX 1 AA1 PRO A 19 GLU A 29 1 11 HELIX 2 AA2 SER A 47 ASP A 57 1 11 HELIX 3 AA3 MET A 62 ALA A 67 5 6 HELIX 4 AA4 PRO A 79 VAL A 83 5 5 HELIX 5 AA5 ASN A 84 ALA A 92 1 9 HELIX 6 AA6 LEU A 94 ILE A 102 1 9 HELIX 7 AA7 GLY A 108 GLY A 128 1 21 HELIX 8 AA8 PHE A 137 GLY A 151 1 15 HELIX 9 AA9 PRO A 153 GLU A 155 5 3 HELIX 10 AB1 ASP A 156 SER A 163 1 8 HELIX 11 AB2 SER A 163 PHE A 168 1 6 HELIX 12 AB3 ILE A 175 GLU A 194 1 20 HELIX 13 AB4 THR A 200 LYS A 211 1 12 HELIX 14 AB5 ASP A 212 SER A 216 5 5 HELIX 15 AB6 SER A 219 GLN A 251 1 33 HELIX 16 AB7 ARG A 252 LYS A 262 1 11 HELIX 17 AB8 LEU A 265 ILE A 276 1 12 HELIX 18 AB9 LEU A 308 PHE A 314 1 7 HELIX 19 AC1 ARG A 340 PHE A 344 5 5 HELIX 20 AC2 GLY A 347 MET A 366 1 20 HELIX 21 AC3 PRO A 374 LEU A 378 5 5 SHEET 1 AA1 5 ILE A 31 ARG A 35 0 SHEET 2 AA1 5 GLU A 41 VAL A 45 -1 O LEU A 44 N ARG A 32 SHEET 3 AA1 5 LEU A 304 VAL A 307 1 O LEU A 306 N TRP A 43 SHEET 4 AA1 5 LEU A 284 ALA A 288 -1 N ARG A 286 O VAL A 305 SHEET 5 AA1 5 PHE A 60 SER A 61 -1 N SER A 61 O LEU A 287 SHEET 1 AA2 3 ALA A 131 ASP A 132 0 SHEET 2 AA2 3 PRO A 393 LEU A 395 -1 O VAL A 394 N ALA A 131 SHEET 3 AA2 3 ASP A 370 LEU A 371 -1 N ASP A 370 O LEU A 395 SHEET 1 AA3 2 ILE A 292 VAL A 294 0 SHEET 2 AA3 2 VAL A 297 VAL A 299 -1 O VAL A 297 N VAL A 294 LINK SG CYS A 345 FE HEM A 401 1555 1555 2.32 CISPEP 1 VAL A 9 PRO A 10 0 -1.02 CISPEP 2 ALA A 129 PRO A 130 0 1.44 SITE 1 AC1 24 MET A 62 MET A 86 HIS A 146 PHE A 230 SITE 2 AC1 24 GLY A 234 SER A 237 THR A 238 PHE A 280 SITE 3 AC1 24 LEU A 284 ARG A 286 ALA A 337 PHE A 338 SITE 4 AC1 24 GLY A 339 HIS A 343 CYS A 345 PRO A 346 SITE 5 AC1 24 GLY A 347 YTT A 402 CYN A 403 HOH A 507 SITE 6 AC1 24 HOH A 580 HOH A 595 HOH A 607 HOH A 625 SITE 1 AC2 15 VAL A 78 VAL A 82 VAL A 83 ASN A 85 SITE 2 AC2 15 ALA A 167 PHE A 168 THR A 229 ARG A 386 SITE 3 AC2 15 HEM A 401 CYN A 403 HOH A 533 HOH A 580 SITE 4 AC2 15 HOH A 586 HOH A 687 HOH A 830 SITE 1 AC3 5 ALA A 233 SER A 237 ARG A 386 HEM A 401 SITE 2 AC3 5 YTT A 402 SITE 1 AC4 7 SER A 12 HOH A 510 HOH A 554 HOH A 587 SITE 2 AC4 7 HOH A 634 HOH A 702 HOH A 705 SITE 1 AC5 8 ARG A 58 SER A 61 MET A 62 LYS A 63 SITE 2 AC5 8 HIS A 343 HOH A 505 HOH A 512 HOH A 537 SITE 1 AC6 8 LYS A 211 PRO A 330 ASN A 331 PRO A 332 SITE 2 AC6 8 THR A 333 SER A 334 HOH A 503 HOH A 707 SITE 1 AC7 4 PRO A 158 ARG A 162 HOH A 518 HOH A 693 CRYST1 77.856 77.856 263.615 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012844 0.007416 0.000000 0.00000 SCALE2 0.000000 0.014831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003793 0.00000