HEADER TRANSFERASE/INHIBITOR 27-NOV-16 5WQK TITLE CRYSTAL STRUCTURE OF 3-MERCAPTOPYRUVATE SULFURTRANSFERASE(3MST) IN TITLE 2 COMPLEX WITH COMPOUND1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFURTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 5-297; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MPST, MCG_13337; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SUWANAI,S.TOMA-FUKAI,T.SHIMIZU REVDAT 1 06-SEP-17 5WQK 0 JRNL AUTH K.HANAOKA,K.SASAKURA,Y.SUWANAI,S.TOMA-FUKAI,K.SHIMAMOTO, JRNL AUTH 2 Y.TAKANO,N.SHIBUYA,T.TERAI,T.KOMATSU,T.UENO,Y.OGASAWARA, JRNL AUTH 3 Y.TSUCHIYA,Y.WATANABE,H.KIMURA,C.WANG,M.UCHIYAMA,H.KOJIMA, JRNL AUTH 4 T.OKABE,Y.URANO,T.SHIMIZU,T.NAGANO JRNL TITL DISCOVERY AND MECHANISTIC CHARACTERIZATION OF SELECTIVE JRNL TITL 2 INHIBITORS OF H2S-PRODUCING ENZYME: 3-MERCAPTOPYRUVATE JRNL TITL 3 SULFURTRANSFERASE (3MST) TARGETING ACTIVE-SITE CYSTEINE JRNL TITL 4 PERSULFIDE JRNL REF SCI REP V. 7 40227 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28079151 JRNL DOI 10.1038/SREP40227 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 56656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4977 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4564 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6780 ; 1.852 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10526 ; 0.907 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;33.925 ;23.277 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;13.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5783 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1228 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2435 ; 1.390 ; 1.240 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2433 ; 1.373 ; 1.239 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3070 ; 2.063 ; 1.851 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3071 ; 2.062 ; 1.851 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2542 ; 1.926 ; 1.433 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2542 ; 1.926 ; 1.433 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3711 ; 3.042 ; 2.066 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5809 ; 4.194 ;10.129 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5810 ; 4.193 ;10.130 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3,350, HEPES-NAOH, NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.84300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 227 O HOH B 401 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 167 CD GLU A 167 OE2 0.074 REMARK 500 GLU B 167 CD GLU B 167 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 129 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 108 -66.43 -136.78 REMARK 500 CSS A 248 -144.32 -162.59 REMARK 500 VAL A 252 -63.97 -92.50 REMARK 500 ASP A 268 71.25 -112.77 REMARK 500 SER A 275 -156.29 60.16 REMARK 500 ALA B 22 65.43 -115.93 REMARK 500 HIS B 74 55.68 37.07 REMARK 500 TYR B 108 -66.73 -141.97 REMARK 500 CSS B 248 -148.46 -162.51 REMARK 500 ASP B 268 69.44 -113.29 REMARK 500 SER B 275 -156.37 59.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 O REMARK 620 2 HIS A 74 O 80.2 REMARK 620 3 SER A 250 O 84.7 100.2 REMARK 620 4 ASP A 273 O 118.9 160.1 87.8 REMARK 620 5 ASP A 273 OD1 150.4 78.8 119.5 81.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 195 O REMARK 620 2 ARG A 197 O 90.4 REMARK 620 3 ILE A 200 O 112.4 84.4 REMARK 620 4 HOH A 592 O 94.0 99.4 153.4 REMARK 620 5 HOH A 468 O 169.9 89.3 77.6 76.1 REMARK 620 6 HOH A 559 O 85.5 149.6 69.7 110.9 99.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 O REMARK 620 2 HIS B 74 O 78.7 REMARK 620 3 SER B 250 O 83.8 101.7 REMARK 620 4 ASP B 273 O 118.7 161.5 87.3 REMARK 620 5 ASP B 273 OD1 148.9 78.6 121.7 82.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 195 O REMARK 620 2 ARG B 197 O 94.4 REMARK 620 3 ILE B 200 O 110.7 84.8 REMARK 620 4 HOH B 471 O 86.6 146.6 63.9 REMARK 620 5 HOH B 508 O 164.5 90.4 84.4 97.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7NC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7NC B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WQJ RELATED DB: PDB DBREF 5WQK A 5 297 UNP Q505N7 Q505N7_MOUSE 5 297 DBREF 5WQK B 5 297 UNP Q505N7 Q505N7_MOUSE 5 297 SEQADV 5WQK SER A 65 UNP Q505N7 CYS 65 ENGINEERED MUTATION SEQADV 5WQK SER A 255 UNP Q505N7 CYS 255 ENGINEERED MUTATION SEQADV 5WQK SER A 264 UNP Q505N7 CYS 264 ENGINEERED MUTATION SEQADV 5WQK SER B 65 UNP Q505N7 CYS 65 ENGINEERED MUTATION SEQADV 5WQK SER B 255 UNP Q505N7 CYS 255 ENGINEERED MUTATION SEQADV 5WQK SER B 264 UNP Q505N7 CYS 264 ENGINEERED MUTATION SEQRES 1 A 293 GLN LEU PHE ARG ALA LEU VAL SER ALA GLN TRP VAL ALA SEQRES 2 A 293 GLU ALA LEU LYS ALA PRO ARG SER SER GLN PRO LEU LYS SEQRES 3 A 293 LEU LEU ASP ALA SER TRP TYR LEU PRO LYS LEU GLY ARG SEQRES 4 A 293 ASP ALA ARG ARG GLU PHE GLU GLU ARG HIS ILE PRO GLY SEQRES 5 A 293 ALA ALA PHE PHE ASP ILE ASP ARG SER SER ASP HIS THR SEQRES 6 A 293 SER PRO TYR ASP HIS MET LEU PRO ASN ALA THR HIS PHE SEQRES 7 A 293 ALA ASP TYR ALA GLY SER LEU GLY VAL SER ALA ALA THR SEQRES 8 A 293 HIS VAL VAL ILE TYR ASP GLY SER ASP GLN GLY LEU TYR SEQRES 9 A 293 SER ALA PRO ARG VAL TRP TRP MET PHE ARG ALA PHE GLY SEQRES 10 A 293 HIS HIS SER VAL SER LEU LEU ASP GLY GLY PHE ARG HIS SEQRES 11 A 293 TRP LEU ASN GLN ASN LEU PRO ILE SER SER GLY LYS SER SEQRES 12 A 293 HIS SER GLU PRO ALA GLU PHE SER ALA GLN LEU ASP PRO SEQRES 13 A 293 SER PHE ILE LYS THR HIS GLU ASP ILE LEU GLU ASN LEU SEQRES 14 A 293 ASP ALA ARG ARG PHE GLN VAL VAL ASP ALA ARG ALA ALA SEQRES 15 A 293 GLY ARG PHE GLN GLY THR GLN PRO GLU PRO ARG ASP GLY SEQRES 16 A 293 ILE GLU PRO GLY HIS ILE PRO GLY SER VAL ASN ILE PRO SEQRES 17 A 293 PHE THR GLU PHE LEU THR ASN GLU GLY LEU GLU LYS SER SEQRES 18 A 293 PRO GLU GLU ILE LYS ARG LEU PHE LYS GLU LYS LYS VAL SEQRES 19 A 293 ASP LEU SER LYS PRO LEU VAL ALA THR CSS GLY SER GLY SEQRES 20 A 293 VAL THR ALA SER HIS VAL VAL LEU GLY ALA PHE LEU SER SEQRES 21 A 293 GLY LYS SER ASP VAL PRO VAL TYR ASP GLY SER TRP VAL SEQRES 22 A 293 GLU TRP TYR MET ARG ALA GLN PRO GLU HIS ILE ILE SER SEQRES 23 A 293 GLU GLY ARG GLY LYS THR GLN SEQRES 1 B 293 GLN LEU PHE ARG ALA LEU VAL SER ALA GLN TRP VAL ALA SEQRES 2 B 293 GLU ALA LEU LYS ALA PRO ARG SER SER GLN PRO LEU LYS SEQRES 3 B 293 LEU LEU ASP ALA SER TRP TYR LEU PRO LYS LEU GLY ARG SEQRES 4 B 293 ASP ALA ARG ARG GLU PHE GLU GLU ARG HIS ILE PRO GLY SEQRES 5 B 293 ALA ALA PHE PHE ASP ILE ASP ARG SER SER ASP HIS THR SEQRES 6 B 293 SER PRO TYR ASP HIS MET LEU PRO ASN ALA THR HIS PHE SEQRES 7 B 293 ALA ASP TYR ALA GLY SER LEU GLY VAL SER ALA ALA THR SEQRES 8 B 293 HIS VAL VAL ILE TYR ASP GLY SER ASP GLN GLY LEU TYR SEQRES 9 B 293 SER ALA PRO ARG VAL TRP TRP MET PHE ARG ALA PHE GLY SEQRES 10 B 293 HIS HIS SER VAL SER LEU LEU ASP GLY GLY PHE ARG HIS SEQRES 11 B 293 TRP LEU ASN GLN ASN LEU PRO ILE SER SER GLY LYS SER SEQRES 12 B 293 HIS SER GLU PRO ALA GLU PHE SER ALA GLN LEU ASP PRO SEQRES 13 B 293 SER PHE ILE LYS THR HIS GLU ASP ILE LEU GLU ASN LEU SEQRES 14 B 293 ASP ALA ARG ARG PHE GLN VAL VAL ASP ALA ARG ALA ALA SEQRES 15 B 293 GLY ARG PHE GLN GLY THR GLN PRO GLU PRO ARG ASP GLY SEQRES 16 B 293 ILE GLU PRO GLY HIS ILE PRO GLY SER VAL ASN ILE PRO SEQRES 17 B 293 PHE THR GLU PHE LEU THR ASN GLU GLY LEU GLU LYS SER SEQRES 18 B 293 PRO GLU GLU ILE LYS ARG LEU PHE LYS GLU LYS LYS VAL SEQRES 19 B 293 ASP LEU SER LYS PRO LEU VAL ALA THR CSS GLY SER GLY SEQRES 20 B 293 VAL THR ALA SER HIS VAL VAL LEU GLY ALA PHE LEU SER SEQRES 21 B 293 GLY LYS SER ASP VAL PRO VAL TYR ASP GLY SER TRP VAL SEQRES 22 B 293 GLU TRP TYR MET ARG ALA GLN PRO GLU HIS ILE ILE SER SEQRES 23 B 293 GLU GLY ARG GLY LYS THR GLN MODRES 5WQK CSS A 248 CYS MODIFIED RESIDUE MODRES 5WQK CSS B 248 CYS MODIFIED RESIDUE HET CSS A 248 7 HET CSS B 248 7 HET 7NC A 301 22 HET NA A 302 1 HET NA A 303 1 HET 7NC B 301 22 HET NA B 302 1 HET NA B 303 1 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM 7NC 4-METHYL-2-(2-NAPHTHALEN-1-YL-2-OXIDANYLIDENE-ETHYL) HETNAM 2 7NC SULFANYL-1~{H}-PYRIMIDIN-6-ONE HETNAM NA SODIUM ION FORMUL 1 CSS 2(C3 H7 N O2 S2) FORMUL 3 7NC 2(C17 H14 N2 O2 S) FORMUL 4 NA 4(NA 1+) FORMUL 9 HOH *417(H2 O) HELIX 1 AA1 SER A 12 ALA A 22 1 11 HELIX 2 AA2 LEU A 38 GLY A 42 5 5 HELIX 3 AA3 ASP A 44 ARG A 52 1 9 HELIX 4 AA4 ASP A 61 SER A 65 5 5 HELIX 5 AA5 ASN A 78 LEU A 89 1 12 HELIX 6 AA6 SER A 109 PHE A 120 1 12 HELIX 7 AA7 GLY A 130 GLN A 138 1 9 HELIX 8 AA8 ASP A 159 SER A 161 5 3 HELIX 9 AA9 THR A 165 ARG A 176 1 12 HELIX 10 AB1 ALA A 185 GLY A 191 1 7 HELIX 11 AB2 PRO A 212 LEU A 217 5 6 HELIX 12 AB3 SER A 225 LYS A 236 1 12 HELIX 13 AB4 ALA A 254 SER A 264 1 11 HELIX 14 AB5 GLY A 274 ARG A 282 1 9 HELIX 15 AB6 GLN A 284 ILE A 288 5 5 HELIX 16 AB7 SER B 12 ALA B 22 1 11 HELIX 17 AB8 LEU B 38 GLY B 42 5 5 HELIX 18 AB9 ASP B 44 ARG B 52 1 9 HELIX 19 AC1 ASP B 61 SER B 65 5 5 HELIX 20 AC2 ASN B 78 LEU B 89 1 12 HELIX 21 AC3 SER B 109 PHE B 120 1 12 HELIX 22 AC4 GLY B 130 GLN B 138 1 9 HELIX 23 AC5 ASP B 159 SER B 161 5 3 HELIX 24 AC6 THR B 165 ARG B 176 1 12 HELIX 25 AC7 ALA B 185 GLY B 191 1 7 HELIX 26 AC8 PRO B 212 LEU B 217 5 6 HELIX 27 AC9 SER B 225 LYS B 236 1 12 HELIX 28 AD1 ALA B 254 SER B 264 1 11 HELIX 29 AD2 GLY B 274 ALA B 283 1 10 HELIX 30 AD3 GLN B 284 ILE B 288 5 5 SHEET 1 AA1 5 LEU A 10 VAL A 11 0 SHEET 2 AA1 5 VAL A 125 LEU A 128 1 O LEU A 127 N VAL A 11 SHEET 3 AA1 5 HIS A 96 TYR A 100 1 N ILE A 99 O SER A 126 SHEET 4 AA1 5 LEU A 29 ASP A 33 1 N LYS A 30 O VAL A 98 SHEET 5 AA1 5 ALA A 58 PHE A 59 1 O ALA A 58 N ASP A 33 SHEET 1 AA2 2 ILE A 163 LYS A 164 0 SHEET 2 AA2 2 VAL A 271 TYR A 272 1 O VAL A 271 N LYS A 164 SHEET 1 AA3 3 VAL A 209 ASN A 210 0 SHEET 2 AA3 3 GLN A 179 ASP A 182 1 N ASP A 182 O VAL A 209 SHEET 3 AA3 3 LEU A 244 THR A 247 1 O VAL A 245 N GLN A 179 SHEET 1 AA4 5 LEU B 10 VAL B 11 0 SHEET 2 AA4 5 VAL B 125 LEU B 128 1 O LEU B 127 N VAL B 11 SHEET 3 AA4 5 HIS B 96 TYR B 100 1 N ILE B 99 O SER B 126 SHEET 4 AA4 5 LEU B 29 ASP B 33 1 N LYS B 30 O VAL B 98 SHEET 5 AA4 5 ALA B 58 PHE B 59 1 O ALA B 58 N ASP B 33 SHEET 1 AA5 2 ILE B 163 LYS B 164 0 SHEET 2 AA5 2 VAL B 271 TYR B 272 1 O VAL B 271 N LYS B 164 SHEET 1 AA6 3 VAL B 209 ASN B 210 0 SHEET 2 AA6 3 GLN B 179 ASP B 182 1 N ASP B 182 O VAL B 209 SHEET 3 AA6 3 LEU B 244 THR B 247 1 O VAL B 245 N VAL B 181 LINK O ASP A 73 NA NA A 302 1555 1555 2.61 LINK O HIS A 74 NA NA A 302 1555 1555 2.38 LINK O GLU A 195 NA NA A 303 1555 1555 2.50 LINK O ARG A 197 NA NA A 303 1555 1555 2.50 LINK O ILE A 200 NA NA A 303 1555 1555 2.78 LINK C THR A 247 N CSS A 248 1555 1555 1.35 LINK C CSS A 248 N GLY A 249 1555 1555 1.35 LINK O SER A 250 NA NA A 302 1555 1555 2.24 LINK O ASP A 273 NA NA A 302 1555 1555 2.32 LINK OD1 ASP A 273 NA NA A 302 1555 1555 2.42 LINK O ASP B 73 NA NA B 302 1555 1555 2.60 LINK O HIS B 74 NA NA B 302 1555 1555 2.34 LINK O GLU B 195 NA NA B 303 1555 1555 2.57 LINK O ARG B 197 NA NA B 303 1555 1555 2.42 LINK O ILE B 200 NA NA B 303 1555 1555 2.77 LINK C THR B 247 N CSS B 248 1555 1555 1.32 LINK C CSS B 248 N GLY B 249 1555 1555 1.32 LINK O SER B 250 NA NA B 302 1555 1555 2.27 LINK O ASP B 273 NA NA B 302 1555 1555 2.34 LINK OD1 ASP B 273 NA NA B 302 1555 1555 2.32 LINK NA NA A 303 O HOH A 592 1555 1555 2.24 LINK NA NA A 303 O HOH A 468 1555 1555 2.53 LINK NA NA A 303 O HOH A 559 1555 1555 2.34 LINK NA NA B 303 O HOH B 471 1555 1555 2.39 LINK NA NA B 303 O HOH B 508 1555 1555 2.46 SITE 1 AC1 14 TRP A 36 LEU A 38 PRO A 39 ASP A 73 SITE 2 AC1 14 HIS A 74 TYR A 108 ARG A 188 PRO A 196 SITE 3 AC1 14 ARG A 197 CSS A 248 GLY A 249 SER A 250 SITE 4 AC1 14 HOH A 406 HOH A 492 SITE 1 AC2 5 ASP A 73 HIS A 74 MET A 75 SER A 250 SITE 2 AC2 5 ASP A 273 SITE 1 AC3 6 GLU A 195 ARG A 197 ILE A 200 HOH A 468 SITE 2 AC3 6 HOH A 559 HOH A 592 SITE 1 AC4 14 TRP B 36 LEU B 38 PRO B 39 ASP B 73 SITE 2 AC4 14 HIS B 74 TYR B 108 ARG B 188 PRO B 196 SITE 3 AC4 14 ARG B 197 CSS B 248 GLY B 249 SER B 250 SITE 4 AC4 14 HOH B 409 HOH B 503 SITE 1 AC5 5 ASP B 73 HIS B 74 MET B 75 SER B 250 SITE 2 AC5 5 ASP B 273 SITE 1 AC6 5 GLU B 195 ARG B 197 ILE B 200 HOH B 471 SITE 2 AC6 5 HOH B 508 CRYST1 37.328 149.686 54.013 90.00 110.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026790 0.000000 0.009794 0.00000 SCALE2 0.000000 0.006681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019713 0.00000