HEADER HYDROLASE 28-NOV-16 5WQU TITLE CRYSTAL STRUCTURE OF SWEET POTATO BETA-AMYLASE COMPLEXED WITH TITLE 2 MALTOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-499; COMPND 5 SYNONYM: 1,4-ALPHA-D-GLUCAN MALTOHYDROLASE; COMPND 6 EC: 3.2.1.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IPOMOEA BATATAS; SOURCE 3 ORGANISM_COMMON: SWEET POTATO; SOURCE 4 ORGANISM_TAXID: 4120 KEYWDS AMYLASE, MALTOTETRAOSE, SWEET POTATO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.VAJRAVIJAYAN,P.SERGEI,N.NANDHAGOPAL,K.GUNASEKARAN REVDAT 4 08-NOV-23 5WQU 1 HETSYN REVDAT 3 29-JUL-20 5WQU 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 06-JUN-18 5WQU 1 JRNL REVDAT 1 06-DEC-17 5WQU 0 JRNL AUTH S.VAJRAVIJAYAN,S.PLETNEV,N.MANI,N.PLETNEVA,N.NANDHAGOPAL, JRNL AUTH 2 K.GUNASEKARAN JRNL TITL STRUCTURAL INSIGHTS ON STARCH HYDROLYSIS BY PLANT JRNL TITL 2 BETA-AMYLASE AND ITS EVOLUTIONARY RELATIONSHIP WITH JRNL TITL 3 BACTERIAL ENZYMES JRNL REF INT. J. BIOL. MACROMOL. V. 113 329 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 29481953 JRNL DOI 10.1016/J.IJBIOMAC.2018.02.138 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.568 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4064 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3758 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5516 ; 1.811 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8667 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 6.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;37.800 ;24.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;15.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 586 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 946 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1973 ; 3.032 ; 4.158 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1972 ; 3.027 ; 4.157 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2461 ; 4.611 ; 6.229 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2462 ; 4.610 ; 6.232 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 3.709 ; 4.465 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2091 ; 3.708 ; 4.465 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3056 ; 5.805 ; 6.550 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4618 ; 7.494 ;48.183 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4608 ; 7.494 ;48.168 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUID NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : SI 111. ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR: LIQUID REMARK 200 NITROGEN COOLED; SAGITALLY REMARK 200 FOCUSING 2ND CRYSTAL, ROSENBAUM- REMARK 200 ROCK VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 90.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5WQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE (PH 5.5), 0.05M TRIS REMARK 280 (PH 7.5), 0.01M NACL, 2% ISOPROPANOL AND 18% PEG 4000, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.27350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.10350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.27350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.10350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.27350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.27350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.10350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.27350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.27350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.10350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 451 REMARK 465 ASN A 452 REMARK 465 ALA A 453 REMARK 465 ILE A 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 GLC B 3 O5 GLC B 4 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 288 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 39.44 70.94 REMARK 500 GLU A 61 34.07 -99.80 REMARK 500 LYS A 66 15.62 58.28 REMARK 500 PHE A 93 33.52 -86.78 REMARK 500 PHE A 146 76.13 -109.10 REMARK 500 LEU A 188 87.92 -69.47 REMARK 500 PRO A 202 56.76 -109.22 REMARK 500 PHE A 497 44.92 -108.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WQS RELATED DB: PDB REMARK 900 SAME PROTEIN APO FORM DBREF 5WQU A 1 498 UNP P10537 AMYB_IPOBA 2 499 SEQRES 1 A 498 ALA PRO ILE PRO GLY VAL MET PRO ILE GLY ASN TYR VAL SEQRES 2 A 498 SER LEU TYR VAL MET LEU PRO LEU GLY VAL VAL ASN ALA SEQRES 3 A 498 ASP ASN VAL PHE PRO ASP LYS GLU LYS VAL GLU ASP GLU SEQRES 4 A 498 LEU LYS GLN VAL LYS ALA GLY GLY CYS ASP GLY VAL MET SEQRES 5 A 498 VAL ASP VAL TRP TRP GLY ILE ILE GLU ALA LYS GLY PRO SEQRES 6 A 498 LYS GLN TYR ASP TRP SER ALA TYR ARG GLU LEU PHE GLN SEQRES 7 A 498 LEU VAL LYS LYS CYS GLY LEU LYS ILE GLN ALA ILE MET SEQRES 8 A 498 SER PHE HIS GLN CYS GLY GLY ASN VAL GLY ASP ALA VAL SEQRES 9 A 498 PHE ILE PRO ILE PRO GLN TRP ILE LEU GLN ILE GLY ASP SEQRES 10 A 498 LYS ASN PRO ASP ILE PHE TYR THR ASN ARG ALA GLY ASN SEQRES 11 A 498 ARG ASN GLN GLU TYR LEU SER LEU GLY VAL ASP ASN GLN SEQRES 12 A 498 ARG LEU PHE GLN GLY ARG THR ALA LEU GLU MET TYR ARG SEQRES 13 A 498 ASP PHE MET GLU SER PHE ARG ASP ASN MET ALA ASP PHE SEQRES 14 A 498 LEU LYS ALA GLY ASP ILE VAL ASP ILE GLU VAL GLY CYS SEQRES 15 A 498 GLY ALA ALA GLY GLU LEU ARG TYR PRO SER TYR PRO GLU SEQRES 16 A 498 THR GLN GLY TRP VAL PHE PRO GLY ILE GLY GLU PHE GLN SEQRES 17 A 498 CYS TYR ASP LYS TYR MET VAL ALA ASP TRP LYS GLU ALA SEQRES 18 A 498 VAL LYS GLN ALA GLY ASN ALA ASP TRP GLU MET PRO GLY SEQRES 19 A 498 LYS GLY ALA GLY THR TYR ASN ASP THR PRO ASP LYS THR SEQRES 20 A 498 GLU PHE PHE ARG PRO ASN GLY THR TYR LYS THR ASP MET SEQRES 21 A 498 GLY LYS PHE PHE LEU THR TRP TYR SER ASN LYS LEU ILE SEQRES 22 A 498 ILE HIS GLY ASP GLN VAL LEU GLU GLU ALA ASN LYS VAL SEQRES 23 A 498 PHE VAL GLY LEU ARG VAL ASN ILE ALA ALA LYS VAL SER SEQRES 24 A 498 GLY ILE HIS TRP TRP TYR ASN HIS VAL SER HIS ALA ALA SEQRES 25 A 498 GLU LEU THR ALA GLY PHE TYR ASN VAL ALA GLY ARG ASP SEQRES 26 A 498 GLY TYR ARG PRO ILE ALA ARG MET LEU ALA ARG HIS HIS SEQRES 27 A 498 ALA THR LEU ASN PHE THR CYS LEU GLU MET ARG ASP SER SEQRES 28 A 498 GLU GLN PRO ALA GLU ALA LYS SER ALA PRO GLN GLU LEU SEQRES 29 A 498 VAL GLN GLN VAL LEU SER SER GLY TRP LYS GLU TYR ILE SEQRES 30 A 498 ASP VAL ALA GLY GLU ASN ALA LEU PRO ARG TYR ASP ALA SEQRES 31 A 498 THR ALA TYR ASN GLN MET LEU LEU ASN VAL ARG PRO ASN SEQRES 32 A 498 GLY VAL ASN LEU ASN GLY PRO PRO LYS LEU LYS MET SER SEQRES 33 A 498 GLY LEU THR TYR LEU ARG LEU SER ASP ASP LEU LEU GLN SEQRES 34 A 498 THR ASP ASN PHE GLU LEU PHE LYS LYS PHE VAL LYS LYS SEQRES 35 A 498 MET HIS ALA ASP LEU ASP PRO SER PRO ASN ALA ILE SER SEQRES 36 A 498 PRO ALA VAL LEU GLU ARG SER ASN SER ALA ILE THR ILE SEQRES 37 A 498 ASP GLU LEU MET GLU ALA THR LYS GLY SER ARG PRO PHE SEQRES 38 A 498 PRO TRP TYR ASP VAL THR ASP MET PRO VAL ASP GLY SER SEQRES 39 A 498 ASN PRO PHE ASP HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 4(C6 H12 O6) FORMUL 3 HOH *154(H2 O) HELIX 1 AA1 PRO A 8 TYR A 12 5 5 HELIX 2 AA2 ASP A 32 GLY A 46 1 15 HELIX 3 AA3 TRP A 57 GLU A 61 1 5 HELIX 4 AA4 TRP A 70 CYS A 83 1 14 HELIX 5 AA5 PRO A 109 ASN A 119 1 11 HELIX 6 AA6 LEU A 138 ASP A 141 5 4 HELIX 7 AA7 THR A 150 MET A 166 1 17 HELIX 8 AA8 MET A 166 GLY A 173 1 8 HELIX 9 AA9 GLY A 183 GLU A 187 5 5 HELIX 10 AB1 PRO A 194 GLY A 198 5 5 HELIX 11 AB2 ASP A 211 ALA A 225 1 15 HELIX 12 AB3 GLY A 234 GLY A 238 5 5 HELIX 13 AB4 THR A 243 THR A 247 5 5 HELIX 14 AB5 GLY A 254 LYS A 257 5 4 HELIX 15 AB6 THR A 258 VAL A 288 1 31 HELIX 16 AB7 HIS A 310 GLY A 317 1 8 HELIX 17 AB8 TYR A 327 HIS A 337 1 11 HELIX 18 AB9 ARG A 349 GLN A 353 5 5 HELIX 19 AC1 PRO A 354 LYS A 358 5 5 HELIX 20 AC2 ALA A 360 GLU A 375 1 16 HELIX 21 AC3 ASP A 389 ARG A 401 1 13 HELIX 22 AC4 SER A 424 GLN A 429 1 6 HELIX 23 AC5 GLN A 429 HIS A 444 1 16 HELIX 24 AC6 THR A 467 GLU A 473 1 7 HELIX 25 AC7 ALA A 474 LYS A 476 5 3 SHEET 1 AA1 9 LEU A 15 MET A 18 0 SHEET 2 AA1 9 GLY A 50 TRP A 56 1 O MET A 52 N VAL A 17 SHEET 3 AA1 9 LYS A 86 SER A 92 1 O GLN A 88 N VAL A 51 SHEET 4 AA1 9 ILE A 175 VAL A 180 1 O GLU A 179 N MET A 91 SHEET 5 AA1 9 ASN A 293 VAL A 298 1 O ALA A 295 N VAL A 180 SHEET 6 AA1 9 THR A 340 PHE A 343 1 O ASN A 342 N VAL A 298 SHEET 7 AA1 9 VAL A 379 GLU A 382 1 O ALA A 380 N LEU A 341 SHEET 8 AA1 9 LEU A 418 TYR A 420 1 O THR A 419 N GLY A 381 SHEET 9 AA1 9 LEU A 15 MET A 18 1 N MET A 18 O TYR A 420 SHEET 1 AA2 2 CYS A 96 GLY A 97 0 SHEET 2 AA2 2 PHE A 105 ILE A 106 -1 O ILE A 106 N CYS A 96 SHEET 1 AA3 2 PHE A 123 THR A 125 0 SHEET 2 AA3 2 ARG A 131 LEU A 136 -1 O ASN A 132 N TYR A 124 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.45 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.47 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.42 CISPEP 1 PHE A 201 PRO A 202 0 4.63 CISPEP 2 LEU A 421 ARG A 422 0 5.40 CRYST1 128.547 128.547 66.207 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015104 0.00000