HEADER HYDROLASE 29-NOV-16 5WR6 TITLE THERMOLYSIN, LIGANDED FORM WITH CRYO CONDITION 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 236-551; COMPND 5 SYNONYM: NEUTRAL PROTEASE; COMPND 6 EC: 3.4.24.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: NPRS, NPRM; SOURCE 5 EXPRESSION_SYSTEM: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1422 KEYWDS X-RAY FREE-ELECTRON LASER, SERIAL FEMTOSECOND CRYSTALLOGRAPHY, KEYWDS 2 MICROCRYSTAL, STRUCTURE-BASED DRUG DESIGN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KUNISHIMA,H.NAITOW,Y.MATSUURA REVDAT 2 08-NOV-23 5WR6 1 LINK REVDAT 1 16-AUG-17 5WR6 0 JRNL AUTH H.NAITOW,Y.MATSUURA,K.TONO,Y.JOTI,T.KAMESHIMA,T.HATSUI, JRNL AUTH 2 M.YABASHI,R.TANAKA,T.TANAKA,M.SUGAHARA,J.KOBAYASHI,E.NANGO, JRNL AUTH 3 S.IWATA,N.KUNISHIMA JRNL TITL PROTEIN-LIGAND COMPLEX STRUCTURE FROM SERIAL FEMTOSECOND JRNL TITL 2 CRYSTALLOGRAPHY USING SOAKED THERMOLYSIN MICROCRYSTALS AND JRNL TITL 3 COMPARISON WITH STRUCTURES FROM SYNCHROTRON RADIATION JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 702 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28777085 JRNL DOI 10.1107/S2059798317008919 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 14639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.4800 - 2.3000 0.99 2796 135 0.1790 0.2420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4OW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000MME, MES, CACL2, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.09333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.57000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.61667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.52333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.04667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.09333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.61667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.57000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.52333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 705 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 843 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 928 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 960 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 973 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 92.39 -161.82 REMARK 500 THR A 26 -59.86 66.91 REMARK 500 SER A 92 -173.38 58.22 REMARK 500 SER A 107 -154.05 64.21 REMARK 500 THR A 152 -97.06 -111.37 REMARK 500 ASN A 159 -141.97 55.07 REMARK 500 THR A 194 77.01 40.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 955 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 962 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 965 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 966 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 970 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 971 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH A 976 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A 978 DISTANCE = 9.21 ANGSTROMS REMARK 525 HOH A 979 DISTANCE = 10.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 52.2 REMARK 620 3 ASP A 59 OD1 72.0 123.7 REMARK 620 4 GLN A 61 O 91.9 94.6 93.5 REMARK 620 5 HOH A 549 O 133.8 82.6 153.6 81.9 REMARK 620 6 HOH A 584 O 146.5 156.8 75.3 97.4 79.5 REMARK 620 7 HOH A 744 O 85.3 83.3 86.0 177.1 99.7 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 77.6 REMARK 620 3 GLU A 177 OE2 126.4 48.9 REMARK 620 4 ASP A 185 OD1 157.3 124.9 76.0 REMARK 620 5 GLU A 187 O 83.6 147.3 139.7 75.2 REMARK 620 6 GLU A 190 OE1 85.7 124.4 123.3 82.7 79.9 REMARK 620 7 GLU A 190 OE2 99.9 78.8 75.0 88.3 131.2 52.3 REMARK 620 8 HOH A 567 O 94.5 80.0 76.3 87.9 75.0 154.7 151.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 102.8 REMARK 620 3 GLU A 166 OE2 122.4 91.5 REMARK 620 4 NX6 A 401 O 121.0 126.9 89.1 REMARK 620 5 NX6 A 401 OXT 87.2 103.3 143.3 55.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 90.1 REMARK 620 3 ASP A 185 OD2 89.3 97.5 REMARK 620 4 GLU A 190 OE2 78.9 169.0 82.6 REMARK 620 5 HOH A 602 O 85.4 84.2 174.5 94.8 REMARK 620 6 HOH A 666 O 177.3 91.1 92.9 99.9 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.3 REMARK 620 3 THR A 194 OG1 77.7 65.6 REMARK 620 4 ILE A 197 O 157.4 83.7 103.6 REMARK 620 5 ASP A 200 OD1 123.2 131.3 75.3 78.2 REMARK 620 6 HOH A 511 O 88.6 161.0 122.8 108.5 66.9 REMARK 620 7 HOH A 731 O 86.4 85.9 149.9 81.7 134.3 81.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NX6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WR5 RELATED DB: PDB REMARK 900 RELATED ID: 5WR4 RELATED DB: PDB REMARK 900 RELATED ID: 5WR3 RELATED DB: PDB REMARK 900 RELATED ID: 5WR2 RELATED DB: PDB DBREF 5WR6 A 1 316 UNP P43133 THER_GEOSE 236 551 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET NX6 A 401 19 HET ZN A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET CA A 406 1 HETNAM NX6 N-[(BENZYLOXY)CARBONYL]-L-ASPARTIC ACID HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 NX6 C12 H13 N O6 FORMUL 3 ZN ZN 2+ FORMUL 4 CA 4(CA 2+) FORMUL 8 HOH *479(H2 O) HELIX 1 AA1 ASP A 67 ASN A 89 1 23 HELIX 2 AA2 PRO A 132 GLY A 135 5 4 HELIX 3 AA3 GLY A 136 THR A 152 1 17 HELIX 4 AA4 GLN A 158 ASN A 181 1 24 HELIX 5 AA5 ASP A 207 GLY A 212 5 6 HELIX 6 AA6 HIS A 216 ARG A 220 5 5 HELIX 7 AA7 THR A 224 VAL A 230 1 7 HELIX 8 AA8 ASN A 233 GLY A 247 1 15 HELIX 9 AA9 GLY A 259 TYR A 274 1 16 HELIX 10 AB1 ASN A 280 GLY A 297 1 18 HELIX 11 AB2 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 VAL A 104 1 O ILE A 100 N PHE A 40 SHEET 4 AA3 5 MET A 120 TYR A 122 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.61 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.39 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.42 LINK O GLN A 61 CA CA A 403 1555 1555 2.15 LINK OD2 ASP A 138 CA CA A 404 1555 1555 2.54 LINK NE2 HIS A 142 ZN ZN A 402 1555 1555 1.99 LINK NE2 HIS A 146 ZN ZN A 402 1555 1555 2.11 LINK OE2 GLU A 166 ZN ZN A 402 1555 1555 1.92 LINK OE1 GLU A 177 CA CA A 404 1555 1555 2.62 LINK OE2 GLU A 177 CA CA A 404 1555 1555 2.71 LINK OE2 GLU A 177 CA CA A 405 1555 1555 2.59 LINK O ASN A 183 CA CA A 405 1555 1555 2.31 LINK OD1 ASP A 185 CA CA A 404 1555 1555 2.56 LINK OD2 ASP A 185 CA CA A 405 1555 1555 2.59 LINK O GLU A 187 CA CA A 404 1555 1555 2.31 LINK OE1 GLU A 190 CA CA A 404 1555 1555 2.47 LINK OE2 GLU A 190 CA CA A 404 1555 1555 2.47 LINK OE2 GLU A 190 CA CA A 405 1555 1555 2.36 LINK O TYR A 193 CA CA A 406 1555 1555 2.40 LINK O THR A 194 CA CA A 406 1555 1555 2.34 LINK OG1 THR A 194 CA CA A 406 1555 1555 2.34 LINK O ILE A 197 CA CA A 406 1555 1555 2.30 LINK OD1 ASP A 200 CA CA A 406 1555 1555 2.36 LINK O NX6 A 401 ZN ZN A 402 1555 1555 2.03 LINK OXT NX6 A 401 ZN ZN A 402 1555 1555 2.62 LINK CA CA A 403 O HOH A 549 1555 1555 2.53 LINK CA CA A 403 O HOH A 584 1555 1555 2.79 LINK CA CA A 403 O HOH A 744 1555 1555 2.48 LINK CA CA A 404 O HOH A 567 1555 1555 2.53 LINK CA CA A 405 O HOH A 602 1555 1555 2.49 LINK CA CA A 405 O HOH A 666 1555 1555 2.33 LINK CA CA A 406 O HOH A 511 1555 1555 2.57 LINK CA CA A 406 O HOH A 731 1555 1555 2.60 CISPEP 1 LEU A 50 PRO A 51 0 -1.72 SITE 1 AC1 13 ASN A 112 ALA A 113 HIS A 142 GLU A 143 SITE 2 AC1 13 TYR A 157 GLU A 166 ILE A 188 LEU A 202 SITE 3 AC1 13 HIS A 231 ZN A 402 HOH A 533 HOH A 576 SITE 4 AC1 13 HOH A 664 SITE 1 AC2 4 HIS A 142 HIS A 146 GLU A 166 NX6 A 401 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A 549 SITE 2 AC3 6 HOH A 584 HOH A 744 SITE 1 AC4 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC4 6 GLU A 190 HOH A 567 SITE 1 AC5 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC5 6 HOH A 602 HOH A 666 SITE 1 AC6 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC6 6 HOH A 511 HOH A 731 CRYST1 92.929 92.929 129.140 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010761 0.006213 0.000000 0.00000 SCALE2 0.000000 0.012426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007744 0.00000