HEADER ENDOCYTOSIS 02-DEC-16 5WRK TITLE MU2 SUBUNIT OF THE CLATHRIN ADAPTOR COMPLEX AP2 IN COMPLEX WITH IRS-1 TITLE 2 Y608 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT MU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-223,UNP RESIDUES 261-435; COMPND 5 SYNONYM: AP-2 MU CHAIN,ADAPTOR PROTEIN COMPLEX AP-2 SUBUNIT MU, COMPND 6 ADAPTOR-RELATED PROTEIN COMPLEX 2 SUBUNIT MU,CLATHRIN ASSEMBLY COMPND 7 PROTEIN COMPLEX 2 MU MEDIUM CHAIN,CLATHRIN COAT ASSEMBLY PROTEIN COMPND 8 AP50,CLATHRIN COAT-ASSOCIATED PROTEIN AP50,MU2-ADAPTIN,PLASMA COMPND 9 MEMBRANE ADAPTOR AP-2 50 KDA PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: B CHAIN IS A PART OF A CHAIN FOR WHICH RESIDUE NAMES COMPND 12 AND RESIDUE NUMBERS WERE NOT DETERMINED DUE TO INSUFFICIENT ELECTRON COMPND 13 DENSITY; COMPND 14 MOL_ID: 2; COMPND 15 MOLECULE: INSULIN RECEPTOR SUBSTRATE 1; COMPND 16 CHAIN: P; COMPND 17 SYNONYM: IRS-1,PP185; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: AP2M1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS ENDOCYTOSIS, CLATHRIN ADAPTOR AP-2 COMPLEX SUBUNIT, PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YONEYAMA,H.NIWA,T.UMEHARA,S.YOKOYAMA,F.HAKUNO,S.TAKAHASHI REVDAT 3 08-NOV-23 5WRK 1 REMARK REVDAT 2 19-DEC-18 5WRK 1 JRNL REVDAT 1 06-DEC-17 5WRK 0 JRNL AUTH Y.YONEYAMA,P.LANZERSTORFER,H.NIWA,T.UMEHARA,T.SHIBANO, JRNL AUTH 2 S.YOKOYAMA,K.CHIDA,J.WEGHUBER,F.HAKUNO,S.I.TAKAHASHI JRNL TITL IRS-1 ACTS AS AN ENDOCYTIC REGULATOR OF IGF-I RECEPTOR TO JRNL TITL 2 FACILITATE SUSTAINED IGF SIGNALING JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29661273 JRNL DOI 10.7554/ELIFE.32893 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8090 - 6.3178 0.99 2633 131 0.1769 0.2047 REMARK 3 2 6.3178 - 5.0169 1.00 2690 109 0.1740 0.1539 REMARK 3 3 5.0169 - 4.3834 1.00 2676 102 0.1260 0.1697 REMARK 3 4 4.3834 - 3.9830 1.00 2653 145 0.1420 0.2055 REMARK 3 5 3.9830 - 3.6976 1.00 2632 136 0.1692 0.2007 REMARK 3 6 3.6976 - 3.4797 1.00 2619 154 0.1893 0.2262 REMARK 3 7 3.4797 - 3.3055 1.00 2623 178 0.2072 0.2371 REMARK 3 8 3.3055 - 3.1617 1.00 2616 143 0.2384 0.2984 REMARK 3 9 3.1617 - 3.0400 1.00 2651 141 0.2628 0.3242 REMARK 3 10 3.0400 - 2.9351 1.00 2659 132 0.2712 0.3111 REMARK 3 11 2.9351 - 2.8433 1.00 2651 146 0.2759 0.3046 REMARK 3 12 2.8433 - 2.7621 1.00 2599 156 0.3011 0.3409 REMARK 3 13 2.7621 - 2.6894 1.00 2641 169 0.3288 0.3737 REMARK 3 14 2.6894 - 2.6238 0.98 2569 148 0.3489 0.3947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2043 REMARK 3 ANGLE : 0.948 2748 REMARK 3 CHIRALITY : 0.059 305 REMARK 3 PLANARITY : 0.006 343 REMARK 3 DIHEDRAL : 13.735 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.3310 -8.3252 18.1225 REMARK 3 T TENSOR REMARK 3 T11: 1.1270 T22: 0.9520 REMARK 3 T33: 1.0005 T12: 0.2057 REMARK 3 T13: -0.2625 T23: -0.1689 REMARK 3 L TENSOR REMARK 3 L11: 4.2845 L22: 3.7849 REMARK 3 L33: 7.4459 L12: 0.6664 REMARK 3 L13: 1.3113 L23: -0.4572 REMARK 3 S TENSOR REMARK 3 S11: 0.7955 S12: 0.7910 S13: -0.2660 REMARK 3 S21: -1.3909 S22: -0.4388 S23: 0.4069 REMARK 3 S31: 0.5130 S32: 0.4570 S33: -0.3505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7398 18.2932 37.2121 REMARK 3 T TENSOR REMARK 3 T11: 0.6960 T22: 0.6420 REMARK 3 T33: 0.5947 T12: -0.0506 REMARK 3 T13: 0.1106 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 2.1533 L22: 4.2444 REMARK 3 L33: 0.7685 L12: 0.4407 REMARK 3 L13: 1.2179 L23: 0.0299 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.2137 S13: -0.0897 REMARK 3 S21: 0.2197 S22: -0.1892 S23: 0.9618 REMARK 3 S31: -0.1297 S32: 0.0054 S33: 0.1517 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1798 6.3872 27.5053 REMARK 3 T TENSOR REMARK 3 T11: 0.7816 T22: 0.8623 REMARK 3 T33: 0.8691 T12: 0.1182 REMARK 3 T13: -0.0962 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.1067 L22: 3.1936 REMARK 3 L33: 1.9651 L12: -1.8443 REMARK 3 L13: 0.2203 L23: -0.3129 REMARK 3 S TENSOR REMARK 3 S11: 0.5913 S12: 0.3192 S13: -0.3130 REMARK 3 S21: -0.6662 S22: -0.3965 S23: 0.4191 REMARK 3 S31: 0.2747 S32: 0.0003 S33: -0.1532 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.228 6.431 25.769 REMARK 3 T TENSOR REMARK 3 T11: 0.9675 T22: 0.8924 REMARK 3 T33: 1.2182 T12: 0.0472 REMARK 3 T13: -0.2328 T23: -0.1476 REMARK 3 L TENSOR REMARK 3 L11: 1.7631 L22: 2.6465 REMARK 3 L33: 2.1376 L12: -1.4921 REMARK 3 L13: 0.7091 L23: 0.3103 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.0545 S13: -0.7983 REMARK 3 S21: -0.0185 S22: -0.1675 S23: 1.3726 REMARK 3 S31: 0.6826 S32: -0.6190 S33: -0.1798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.635 22.350 38.628 REMARK 3 T TENSOR REMARK 3 T11: 0.7401 T22: 0.8761 REMARK 3 T33: 0.7385 T12: -0.0163 REMARK 3 T13: 0.1443 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 1.2846 L22: 2.6318 REMARK 3 L33: 1.8760 L12: 0.0893 REMARK 3 L13: 1.5653 L23: 0.5297 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.0162 S13: 0.1347 REMARK 3 S21: -0.4126 S22: -0.2302 S23: 0.4813 REMARK 3 S31: -0.4748 S32: -0.1091 S33: 0.0583 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7660 28.6821 48.7458 REMARK 3 T TENSOR REMARK 3 T11: 0.6923 T22: 0.6211 REMARK 3 T33: 0.5369 T12: -0.0740 REMARK 3 T13: 0.0931 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 4.0253 L22: 3.9090 REMARK 3 L33: 2.9443 L12: 1.1177 REMARK 3 L13: 2.1877 L23: 2.1973 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: -0.0623 S13: -0.2417 REMARK 3 S21: 0.3133 S22: -0.0802 S23: -0.2366 REMARK 3 S31: 0.0255 S32: 0.1574 S33: 0.2336 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.108 47.803 42.967 REMARK 3 T TENSOR REMARK 3 T11: 1.1002 T22: 0.7553 REMARK 3 T33: 1.1358 T12: -0.1708 REMARK 3 T13: -0.4104 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 2.4645 L22: 0.6271 REMARK 3 L33: 1.8239 L12: 1.1110 REMARK 3 L13: 1.6378 L23: 1.0540 REMARK 3 S TENSOR REMARK 3 S11: -0.8627 S12: 0.0637 S13: 0.9281 REMARK 3 S21: -0.8014 S22: -0.4149 S23: 0.4194 REMARK 3 S31: -0.4550 S32: 0.4683 S33: 0.9504 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.262 14.357 39.544 REMARK 3 T TENSOR REMARK 3 T11: 0.7476 T22: 0.7126 REMARK 3 T33: 0.7767 T12: -0.0381 REMARK 3 T13: 0.2053 T23: -0.0905 REMARK 3 L TENSOR REMARK 3 L11: 2.6505 L22: 5.4219 REMARK 3 L33: 2.5650 L12: 1.3435 REMARK 3 L13: 2.2980 L23: 2.8543 REMARK 3 S TENSOR REMARK 3 S11: 0.6131 S12: 0.3118 S13: -0.2007 REMARK 3 S21: 0.9350 S22: -0.1696 S23: -0.3740 REMARK 3 S31: 0.3680 S32: -0.0468 S33: 0.1336 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.524 2.954 31.982 REMARK 3 T TENSOR REMARK 3 T11: 0.7658 T22: 0.7908 REMARK 3 T33: 0.9539 T12: -0.0230 REMARK 3 T13: -0.0475 T23: -0.1375 REMARK 3 L TENSOR REMARK 3 L11: 1.3966 L22: 2.9152 REMARK 3 L33: 1.1779 L12: -0.8240 REMARK 3 L13: 0.9287 L23: 0.8328 REMARK 3 S TENSOR REMARK 3 S11: 0.4777 S12: 0.0527 S13: -0.3715 REMARK 3 S21: -0.3017 S22: -0.4225 S23: 0.8836 REMARK 3 S31: 0.1380 S32: -0.1672 S33: -0.0442 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6295 -0.5769 38.1658 REMARK 3 T TENSOR REMARK 3 T11: 0.7701 T22: 0.8376 REMARK 3 T33: 0.8414 T12: -0.0641 REMARK 3 T13: 0.0264 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.6094 L22: 9.0163 REMARK 3 L33: 9.3479 L12: 2.9321 REMARK 3 L13: 0.0716 L23: -1.7418 REMARK 3 S TENSOR REMARK 3 S11: 0.2506 S12: -1.3063 S13: 0.1674 REMARK 3 S21: 0.7058 S22: -1.1865 S23: 0.5487 REMARK 3 S31: 0.0992 S32: -0.0478 S33: 0.8822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.624 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 1.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M NA FORMATE, 0.05M NICL, 0.1M NA REMARK 280 ACETATE PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.46767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.93533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.46767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.93533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 158 REMARK 465 UNK A 224 REMARK 465 UNK A 225 REMARK 465 UNK A 226 REMARK 465 UNK A 232 REMARK 465 UNK A 233 REMARK 465 UNK A 234 REMARK 465 UNK A 235 REMARK 465 UNK A 236 REMARK 465 UNK A 237 REMARK 465 UNK A 238 REMARK 465 UNK A 239 REMARK 465 UNK A 240 REMARK 465 UNK A 241 REMARK 465 UNK A 242 REMARK 465 UNK A 243 REMARK 465 UNK A 244 REMARK 465 UNK A 245 REMARK 465 UNK A 246 REMARK 465 UNK A 247 REMARK 465 UNK A 248 REMARK 465 UNK A 249 REMARK 465 UNK A 250 REMARK 465 UNK A 251 REMARK 465 UNK A 252 REMARK 465 UNK A 253 REMARK 465 UNK A 254 REMARK 465 UNK A 255 REMARK 465 UNK A 256 REMARK 465 UNK A 257 REMARK 465 UNK A 258 REMARK 465 UNK A 259 REMARK 465 UNK A 260 REMARK 465 PRO P 7 REMARK 465 GLY P 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 193 132.81 -173.36 REMARK 500 MET A 216 -156.47 -134.13 REMARK 500 ASP A 218 71.03 49.92 REMARK 500 UNK A 228 -150.18 -135.53 REMARK 500 ASN A 310 77.25 -114.56 REMARK 500 ASN A 329 34.48 -86.95 REMARK 500 ARG A 383 107.97 -59.66 REMARK 500 ASN A 412 33.84 -90.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 219 ILE A 220 -142.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WRL RELATED DB: PDB REMARK 900 RELATED ID: 5WRM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ELECTRON DENSITY OF RESIDUES A224-A260 IS WEAK. FIVE RESIDUES REMARK 999 WERE PLACED BUT THEIR RESIDUE NUMBERS A227-A231 ARE NOT CONCLUSIVE REMARK 999 AND LABELED UNK. REAL SEQUENCE FOR RESIDUES A224-A260 SHOULD BE REMARK 999 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSE. DBREF 5WRK A 158 223 UNP P84092 AP2M1_RAT 158 223 DBREF 5WRK A 224 260 PDB 5WRK 5WRK 224 260 DBREF 5WRK A 261 435 UNP P84092 AP2M1_RAT 261 435 DBREF 5WRK P 1 8 UNP P35570 IRS1_RAT 607 614 SEQRES 1 A 278 GLN ILE GLY TRP ARG ARG GLU GLY ILE LYS TYR ARG ARG SEQRES 2 A 278 ASN GLU LEU PHE LEU ASP VAL LEU GLU SER VAL ASN LEU SEQRES 3 A 278 LEU MET SER PRO GLN GLY GLN VAL LEU SER ALA HIS VAL SEQRES 4 A 278 SER GLY ARG VAL VAL MET LYS SER TYR LEU SER GLY MET SEQRES 5 A 278 PRO GLU CYS LYS PHE GLY MET ASN ASP LYS ILE VAL ILE SEQRES 6 A 278 GLU UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 A 278 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 A 278 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK ARG SEQRES 9 A 278 SER ILE SER PHE ILE PRO PRO ASP GLY GLU PHE GLU LEU SEQRES 10 A 278 MET ARG TYR ARG THR THR LYS ASP ILE ILE LEU PRO PHE SEQRES 11 A 278 ARG VAL ILE PRO LEU VAL ARG GLU VAL GLY ARG THR LYS SEQRES 12 A 278 LEU GLU VAL LYS VAL VAL ILE LYS SER ASN PHE LYS PRO SEQRES 13 A 278 SER LEU LEU ALA GLN LYS ILE GLU VAL ARG ILE PRO THR SEQRES 14 A 278 PRO LEU ASN THR SER GLY VAL GLN VAL ILE CYS MET LYS SEQRES 15 A 278 GLY LYS ALA LYS TYR LYS ALA SER GLU ASN ALA ILE VAL SEQRES 16 A 278 TRP LYS ILE LYS ARG MET ALA GLY MET LYS GLU SER GLN SEQRES 17 A 278 ILE SER ALA GLU ILE GLU LEU LEU PRO THR ASN ASP LYS SEQRES 18 A 278 LYS LYS TRP ALA ARG PRO PRO ILE SER MET ASN PHE GLU SEQRES 19 A 278 VAL PRO PHE ALA PRO SER GLY LEU LYS VAL ARG TYR LEU SEQRES 20 A 278 LYS VAL PHE GLU PRO LYS LEU ASN TYR SER ASP HIS ASP SEQRES 21 A 278 VAL ILE LYS TRP VAL ARG TYR ILE GLY ARG SER GLY ILE SEQRES 22 A 278 TYR GLU THR ARG CYS SEQRES 1 P 8 GLY TYR MET PRO MET SER PRO GLY HET NI A 501 1 HET NI A 502 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) HELIX 1 AA1 SER A 414 VAL A 418 5 5 SHEET 1 AA1 9 VAL A 221 GLU A 223 0 SHEET 2 AA1 9 GLY A 270 THR A 279 -1 O ARG A 276 N GLU A 223 SHEET 3 AA1 9 VAL A 191 TYR A 205 -1 N GLY A 198 O TYR A 277 SHEET 4 AA1 9 GLU A 172 MET A 185 -1 N SER A 180 O SER A 197 SHEET 5 AA1 9 ILE A 419 THR A 433 1 O ILE A 430 N LEU A 183 SHEET 6 AA1 9 ILE A 386 VAL A 392 -1 N VAL A 392 O GLY A 426 SHEET 7 AA1 9 LEU A 316 PRO A 325 -1 N ARG A 323 O SER A 387 SHEET 8 AA1 9 ALA A 350 ALA A 359 -1 O TRP A 353 N VAL A 322 SHEET 9 AA1 9 LYS A 341 LYS A 345 -1 N LYS A 341 O LYS A 354 SHEET 1 AA2 6 VAL A 221 GLU A 223 0 SHEET 2 AA2 6 GLY A 270 THR A 279 -1 O ARG A 276 N GLU A 223 SHEET 3 AA2 6 VAL A 191 TYR A 205 -1 N GLY A 198 O TYR A 277 SHEET 4 AA2 6 GLU A 172 MET A 185 -1 N SER A 180 O SER A 197 SHEET 5 AA2 6 ILE A 419 THR A 433 1 O ILE A 430 N LEU A 183 SHEET 6 AA2 6 MET P 3 PRO P 4 -1 O MET P 3 N VAL A 422 SHEET 1 AA3 4 UNK A 229 UNK A 230 0 SHEET 2 AA3 4 SER A 262 PHE A 265 -1 O SER A 264 N UNK A 229 SHEET 3 AA3 4 GLU A 211 GLY A 215 -1 N CYS A 212 O PHE A 265 SHEET 4 AA3 4 TYR A 403 PHE A 407 -1 O PHE A 407 N GLU A 211 SHEET 1 AA4 4 PHE A 287 VAL A 296 0 SHEET 2 AA4 4 LYS A 300 SER A 309 -1 O VAL A 306 N ILE A 290 SHEET 3 AA4 4 GLU A 363 LEU A 372 -1 O ALA A 368 N VAL A 303 SHEET 4 AA4 4 THR A 330 CYS A 337 -1 N SER A 331 O GLU A 371 LINK NE2 HIS A 416 NI NI A 501 1555 1555 2.32 SITE 1 AC1 1 HIS A 416 SITE 1 AC2 2 LYS A 203 TYR A 205 CRYST1 126.065 126.065 73.403 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007932 0.004580 0.000000 0.00000 SCALE2 0.000000 0.009160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013623 0.00000