HEADER LYASE 02-DEC-16 5WRO TITLE CRYSTAL STRUCTURE OF DROSOPHILA ENOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 69-500; COMPND 5 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 6 DEHYDRATASE; COMPND 7 EC: 4.2.1.11; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ENO, CG17654; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS ENOLASE, HYDROLYASE, METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,Z.SHI REVDAT 2 08-NOV-23 5WRO 1 LINK REVDAT 1 26-APR-17 5WRO 0 JRNL AUTH C.SUN,B.XU,X.LIU,Z.ZHANG,Z.SU JRNL TITL CRYSTAL STRUCTURE OF ENOLASE FROM DROSOPHILA MELANOGASTER. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 228 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28368282 JRNL DOI 10.1107/S2053230X17004022 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3335 - 6.1824 0.99 2612 140 0.1726 0.1859 REMARK 3 2 6.1824 - 4.9104 1.00 2602 135 0.1479 0.1635 REMARK 3 3 4.9104 - 4.2906 1.00 2659 108 0.1236 0.1884 REMARK 3 4 4.2906 - 3.8987 1.00 2647 140 0.1251 0.1745 REMARK 3 5 3.8987 - 3.6195 1.00 2626 141 0.1313 0.1641 REMARK 3 6 3.6195 - 3.4063 1.00 2595 144 0.1396 0.2023 REMARK 3 7 3.4063 - 3.2358 1.00 2609 136 0.1478 0.1946 REMARK 3 8 3.2358 - 3.0950 1.00 2635 132 0.1594 0.1980 REMARK 3 9 3.0950 - 2.9759 1.00 2630 129 0.1567 0.1843 REMARK 3 10 2.9759 - 2.8732 1.00 2622 142 0.1611 0.1862 REMARK 3 11 2.8732 - 2.7834 1.00 2582 151 0.1562 0.2263 REMARK 3 12 2.7834 - 2.7039 1.00 2624 111 0.1590 0.2151 REMARK 3 13 2.7039 - 2.6327 1.00 2627 145 0.1535 0.1789 REMARK 3 14 2.6327 - 2.5685 1.00 2601 181 0.1539 0.2008 REMARK 3 15 2.5685 - 2.5101 1.00 2612 122 0.1711 0.2148 REMARK 3 16 2.5101 - 2.4567 1.00 2639 135 0.1761 0.2076 REMARK 3 17 2.4567 - 2.4076 1.00 2600 163 0.1737 0.2108 REMARK 3 18 2.4076 - 2.3621 1.00 2596 160 0.1767 0.2323 REMARK 3 19 2.3621 - 2.3200 1.00 2596 164 0.1729 0.2151 REMARK 3 20 2.3200 - 2.2806 1.00 2556 161 0.1758 0.2178 REMARK 3 21 2.2806 - 2.2438 1.00 2606 166 0.1910 0.2293 REMARK 3 22 2.2438 - 2.2093 1.00 2609 129 0.1998 0.2179 REMARK 3 23 2.2093 - 2.1768 1.00 2666 128 0.1981 0.2541 REMARK 3 24 2.1768 - 2.1462 1.00 2598 156 0.2058 0.2430 REMARK 3 25 2.1462 - 2.1172 1.00 2639 118 0.2072 0.2634 REMARK 3 26 2.1172 - 2.0897 1.00 2597 150 0.2230 0.2479 REMARK 3 27 2.0897 - 2.0636 1.00 2672 109 0.2372 0.2874 REMARK 3 28 2.0636 - 2.0387 1.00 2566 129 0.2579 0.3020 REMARK 3 29 2.0387 - 2.0150 1.00 2617 127 0.2736 0.3007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3394 REMARK 3 ANGLE : 0.802 4602 REMARK 3 CHIRALITY : 0.050 522 REMARK 3 PLANARITY : 0.004 602 REMARK 3 DIHEDRAL : 4.619 2750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1772 62.2082 -0.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.2131 REMARK 3 T33: 0.2916 T12: -0.0608 REMARK 3 T13: -0.0262 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.1173 L22: 3.1683 REMARK 3 L33: 2.7471 L12: 0.5283 REMARK 3 L13: 0.9834 L23: -0.6409 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: 0.0573 S13: 0.3091 REMARK 3 S21: -0.0133 S22: 0.0125 S23: -0.1188 REMARK 3 S31: -0.3078 S32: 0.1932 S33: 0.0784 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9334 43.0852 -17.3066 REMARK 3 T TENSOR REMARK 3 T11: 0.2529 T22: 0.3169 REMARK 3 T33: 0.1898 T12: -0.0330 REMARK 3 T13: 0.0270 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.4865 L22: 1.8736 REMARK 3 L33: 1.3383 L12: 0.2137 REMARK 3 L13: 0.1175 L23: 0.2075 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.4149 S13: -0.0536 REMARK 3 S21: -0.3870 S22: 0.0399 S23: -0.2207 REMARK 3 S31: 0.0674 S32: 0.2398 S33: 0.0331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300001716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.015 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3B97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM COCL2, 0.1 M CDCL2, 0.1 M MES REMARK 280 PH6.5, 1.9 M (NH4)2SO4, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.30038 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.59733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.41000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.30038 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.59733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.41000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.30038 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.59733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.41000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.30038 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.59733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.41000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.30038 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.59733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.41000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.30038 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.59733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.60076 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 153.19467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 68.60076 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 153.19467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 68.60076 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 153.19467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 68.60076 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 153.19467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 68.60076 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 153.19467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 68.60076 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 153.19467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 71 CE NZ REMARK 470 SER A 107 OG REMARK 470 LYS A 121 CE NZ REMARK 470 GLU A 168 CD OE1 OE2 REMARK 470 LYS A 199 CE NZ REMARK 470 LYS A 288 CE NZ REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 GLU A 331 OE1 OE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 335 CD CE NZ REMARK 470 ASP A 342 CG OD1 OD2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 353 CD CE NZ REMARK 470 LYS A 394 CD CE NZ REMARK 470 GLU A 401 CD OE1 OE2 REMARK 470 LYS A 403 CD CE NZ REMARK 470 LYS A 490 CE NZ REMARK 470 LYS A 494 CE NZ REMARK 470 LYS A 498 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 234 O HOH A 701 2.01 REMARK 500 O HOH A 708 O HOH A 962 2.16 REMARK 500 O HOH A 802 O HOH A 975 2.17 REMARK 500 O HOH A 701 O HOH A 751 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 857 O HOH A 973 6555 2.16 REMARK 500 O HOH A 899 O HOH A 971 6555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 234 CD GLU A 234 OE1 -0.069 REMARK 500 CYS A 378 CB CYS A 378 SG 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 110 -34.15 115.26 REMARK 500 THR A 139 -61.40 -136.58 REMARK 500 LYS A 332 40.44 -95.89 REMARK 500 ASP A 386 -75.48 -126.26 REMARK 500 THR A 463 33.16 -144.39 REMARK 500 ARG A 468 123.15 79.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1031 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 7.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 601 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 62 O REMARK 620 2 HIS A 125 NE2 68.5 REMARK 620 3 HIS A 258 NE2 30.4 38.5 REMARK 620 4 HOH A 722 O 168.2 108.3 146.4 REMARK 620 5 HOH A 956 O 93.4 24.9 63.3 83.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 603 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 225 ND1 REMARK 620 2 GLU A 277 OE2 169.0 REMARK 620 3 HOH A 725 O 94.4 89.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 602 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 312 OD2 REMARK 620 2 GLU A 361 OE1 87.7 REMARK 620 3 ASP A 386 OD1 172.6 85.5 REMARK 620 4 HOH A 707 O 90.3 101.1 93.9 REMARK 620 5 HOH A 720 O 88.8 170.1 97.5 88.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 DBREF 5WRO A 69 500 UNP P15007 ENO_DROME 69 500 SEQADV 5WRO GLY A 62 UNP P15007 EXPRESSION TAG SEQADV 5WRO ALA A 63 UNP P15007 EXPRESSION TAG SEQADV 5WRO MET A 64 UNP P15007 EXPRESSION TAG SEQADV 5WRO ASP A 65 UNP P15007 EXPRESSION TAG SEQADV 5WRO PRO A 66 UNP P15007 EXPRESSION TAG SEQADV 5WRO GLU A 67 UNP P15007 EXPRESSION TAG SEQADV 5WRO PHE A 68 UNP P15007 EXPRESSION TAG SEQRES 1 A 439 GLY ALA MET ASP PRO GLU PHE THR ILE LYS ALA ILE LYS SEQRES 2 A 439 ALA ARG GLN ILE TYR ASP SER ARG GLY ASN PRO THR VAL SEQRES 3 A 439 GLU VAL ASP LEU THR THR GLU LEU GLY LEU PHE ARG ALA SEQRES 4 A 439 ALA VAL PRO SER GLY ALA SER THR GLY VAL HIS GLU ALA SEQRES 5 A 439 LEU GLU LEU ARG ASP ASN ASP LYS ALA ASN TYR HIS GLY SEQRES 6 A 439 LYS SER VAL LEU LYS ALA VAL GLY HIS VAL ASN ASP THR SEQRES 7 A 439 LEU GLY PRO GLU LEU ILE LYS ALA ASN LEU ASP VAL VAL SEQRES 8 A 439 ASP GLN ALA SER ILE ASP ASN PHE MET ILE LYS LEU ASP SEQRES 9 A 439 GLY THR GLU ASN LYS SER LYS PHE GLY ALA ASN ALA ILE SEQRES 10 A 439 LEU GLY VAL SER LEU ALA VAL ALA LYS ALA GLY ALA ALA SEQRES 11 A 439 LYS LYS GLY VAL PRO LEU TYR LYS HIS ILE ALA ASP LEU SEQRES 12 A 439 ALA GLY ASN LYS GLU ILE ILE LEU PRO VAL PRO ALA PHE SEQRES 13 A 439 ASN VAL ILE ASN GLY GLY SER HIS ALA GLY ASN LYS LEU SEQRES 14 A 439 ALA MET GLN GLU PHE MET ILE LEU PRO THR GLY ALA THR SEQRES 15 A 439 SER PHE THR GLU ALA MET LYS MET GLY SER GLU VAL TYR SEQRES 16 A 439 HIS HIS LEU LYS ASN VAL ILE LYS ALA LYS PHE GLY LEU SEQRES 17 A 439 ASP ALA THR ALA VAL GLY ASP GLU GLY GLY PHE ALA PRO SEQRES 18 A 439 ASN ILE GLN SER ASN LYS GLU ALA LEU ASN LEU ILE SER SEQRES 19 A 439 ASP ALA ILE ALA LYS ALA GLY TYR THR GLY LYS ILE GLU SEQRES 20 A 439 ILE GLY MET ASP VAL ALA ALA SER GLU PHE TYR LYS ASP SEQRES 21 A 439 GLY GLN TYR ASP LEU ASP PHE LYS ASN GLU LYS SER ASP SEQRES 22 A 439 LYS SER GLN TRP LEU PRO ALA ASP LYS LEU ALA ASN LEU SEQRES 23 A 439 TYR GLN GLU PHE ILE LYS ASP PHE PRO ILE VAL SER ILE SEQRES 24 A 439 GLU ASP PRO PHE ASP GLN ASP HIS TRP GLU ALA TRP SER SEQRES 25 A 439 ASN LEU THR GLY CYS THR ASP ILE GLN ILE VAL GLY ASP SEQRES 26 A 439 ASP LEU THR VAL THR ASN PRO LYS ARG ILE ALA THR ALA SEQRES 27 A 439 VAL GLU LYS LYS ALA CYS ASN CYS LEU LEU LEU LYS VAL SEQRES 28 A 439 ASN GLN ILE GLY THR VAL THR GLU SER ILE ALA ALA HIS SEQRES 29 A 439 LEU LEU ALA LYS LYS ASN GLY TRP GLY THR MET VAL SER SEQRES 30 A 439 HIS ARG SER GLY GLU THR GLU ASP SER PHE ILE GLY ASP SEQRES 31 A 439 LEU VAL VAL GLY LEU SER THR GLY GLN ILE LYS THR GLY SEQRES 32 A 439 ALA PRO CYS ARG SER GLU ARG LEU ALA LYS TYR ASN GLN SEQRES 33 A 439 ILE LEU ARG ILE GLU GLU GLU ILE GLY ALA GLY VAL LYS SEQRES 34 A 439 PHE ALA GLY LYS SER PHE ARG LYS PRO GLN HET CD A 601 1 HET CD A 602 1 HET CO A 603 1 HET CL A 604 1 HET SO4 A 605 5 HET SO4 A 606 5 HET GOL A 607 6 HET GOL A 608 12 HETNAM CD CADMIUM ION HETNAM CO COBALT (II) ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CD 2(CD 2+) FORMUL 4 CO CO 2+ FORMUL 5 CL CL 1- FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *333(H2 O) HELIX 1 AA1 ASN A 123 LYS A 127 5 5 HELIX 2 AA2 VAL A 129 THR A 139 1 11 HELIX 3 AA3 THR A 139 ASN A 148 1 10 HELIX 4 AA4 ASP A 153 GLY A 166 1 14 HELIX 5 AA5 GLY A 174 GLY A 194 1 21 HELIX 6 AA6 PRO A 196 ALA A 205 1 10 HELIX 7 AA7 GLY A 223 ALA A 226 5 4 HELIX 8 AA8 SER A 244 GLY A 268 1 25 HELIX 9 AA9 LEU A 269 ALA A 273 5 5 HELIX 10 AB1 SER A 286 GLY A 302 1 17 HELIX 11 AB2 ALA A 314 GLU A 317 5 4 HELIX 12 AB3 ASP A 334 TRP A 338 5 5 HELIX 13 AB4 PRO A 340 PHE A 355 1 16 HELIX 14 AB5 HIS A 368 THR A 379 1 12 HELIX 15 AB6 ASN A 392 LYS A 403 1 12 HELIX 16 AB7 LYS A 411 GLY A 416 1 6 HELIX 17 AB8 THR A 417 ASN A 431 1 15 HELIX 18 AB9 SER A 447 SER A 457 1 11 HELIX 19 AC1 ARG A 468 GLY A 486 1 19 HELIX 20 AC2 ALA A 492 PHE A 496 5 5 SHEET 1 AA1 3 ALA A 72 TYR A 79 0 SHEET 2 AA1 3 PRO A 85 THR A 93 -1 O ASP A 90 N LYS A 74 SHEET 3 AA1 3 GLY A 96 ALA A 101 -1 O ALA A 100 N VAL A 89 SHEET 1 AA2 9 VAL A 214 PRO A 215 0 SHEET 2 AA2 9 GLN A 460 LYS A 462 1 O ILE A 461 N VAL A 214 SHEET 3 AA2 9 GLY A 434 SER A 438 1 N VAL A 437 O LYS A 462 SHEET 4 AA2 9 CYS A 407 LEU A 410 1 N LEU A 408 O GLY A 434 SHEET 5 AA2 9 GLN A 382 GLY A 385 1 N GLY A 385 O CYS A 407 SHEET 6 AA2 9 ILE A 357 GLU A 361 1 N VAL A 358 O GLN A 382 SHEET 7 AA2 9 GLU A 308 ASP A 312 1 N MET A 311 O GLU A 361 SHEET 8 AA2 9 GLU A 234 LEU A 238 -1 N LEU A 238 O GLU A 308 SHEET 9 AA2 9 PHE A 217 ASN A 221 -1 N VAL A 219 O PHE A 235 SHEET 1 AA3 2 TYR A 319 LYS A 320 0 SHEET 2 AA3 2 GLN A 323 TYR A 324 -1 O GLN A 323 N LYS A 320 SSBOND 1 CYS A 378 CYS A 378 1555 17554 2.93 LINK O GLY A 62 CD CD A 601 1555 1555 2.43 LINK NE2 HIS A 125 CD CD A 601 1555 2665 2.30 LINK ND1 HIS A 225 CO CO A 603 1555 1555 2.29 LINK NE2 HIS A 258 CD CD A 601 1555 4455 2.40 LINK OE2BGLU A 277 CO CO A 603 1555 1555 2.33 LINK OD2 ASP A 312 CD CD A 602 1555 1555 2.44 LINK OE1 GLU A 361 CD CD A 602 1555 1555 2.39 LINK OD1 ASP A 386 CD CD A 602 1555 1555 2.51 LINK CD CD A 601 O HOH A 722 1555 4565 2.47 LINK CD CD A 601 O HOH A 956 1555 3565 2.49 LINK CD CD A 602 O HOH A 707 1555 1555 2.33 LINK CD CD A 602 O HOH A 720 1555 1555 2.61 LINK CO CO A 603 O HOH A 725 1555 1555 2.38 SITE 1 AC1 5 GLY A 62 HIS A 125 HIS A 258 HOH A 722 SITE 2 AC1 5 HOH A 956 SITE 1 AC2 6 ASP A 312 GLU A 361 ASP A 386 CL A 604 SITE 2 AC2 6 HOH A 707 HOH A 720 SITE 1 AC3 3 HIS A 225 GLU A 277 HOH A 725 SITE 1 AC4 6 ASP A 386 LYS A 411 LYS A 462 CD A 602 SITE 2 AC4 6 SO4 A 606 HOH A 848 SITE 1 AC5 6 SER A 286 ASN A 287 LYS A 288 LEU A 347 SITE 2 AC5 6 PHE A 351 HOH A 756 SITE 1 AC6 6 GLY A 105 ALA A 106 ARG A 440 SER A 441 SITE 2 AC6 6 CL A 604 HOH A 848 SITE 1 AC7 6 ARG A 99 TYR A 198 GLN A 477 GLU A 484 SITE 2 AC7 6 HOH A 713 HOH A 858 SITE 1 AC8 6 ARG A 82 ASN A 84 LYS A 127 HIS A 257 SITE 2 AC8 6 LYS A 260 HOH A 702 CRYST1 118.820 118.820 229.792 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008416 0.004859 0.000000 0.00000 SCALE2 0.000000 0.009718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004352 0.00000