HEADER HYDROLASE 03-DEC-16 5WRT TITLE CRYSTAL STRUCTURE OF TYPE I INORGANIC PYROPHOSPHATASE FROM TOXOPLASMA TITLE 2 GONDII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 74-308; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: SPP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PPI, PPASE, NOVEL INTERFACE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JAMWAL,M.YOGAVEL,A.SHARMA REVDAT 2 20-MAR-24 5WRT 1 LINK REVDAT 1 11-OCT-17 5WRT 0 JRNL AUTH A.JAMWAL,M.YOGAVEL,M.Z.ABDIN,S.K.JAIN,A.SHARMA JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF APICOMPLEXAN JRNL TITL 2 INORGANIC PYROPHOSPHATASES JRNL REF SCI REP V. 7 5255 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28701714 JRNL DOI 10.1038/S41598-017-05234-Y REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 28397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6098 - 5.6549 1.00 2223 162 0.1904 0.2058 REMARK 3 2 5.6549 - 4.4899 1.00 2122 150 0.1712 0.1910 REMARK 3 3 4.4899 - 3.9228 1.00 2079 148 0.1601 0.1720 REMARK 3 4 3.9228 - 3.5643 1.00 2050 147 0.1820 0.2344 REMARK 3 5 3.5643 - 3.3089 0.98 2042 152 0.2067 0.2670 REMARK 3 6 3.3089 - 3.1139 0.98 2028 147 0.2147 0.2262 REMARK 3 7 3.1139 - 2.9580 0.96 1966 142 0.2245 0.2516 REMARK 3 8 2.9580 - 2.8292 0.94 1943 140 0.2315 0.2855 REMARK 3 9 2.8292 - 2.7203 0.93 1883 134 0.2339 0.2689 REMARK 3 10 2.7203 - 2.6265 0.90 1853 122 0.2529 0.2803 REMARK 3 11 2.6265 - 2.5444 0.88 1778 122 0.2571 0.2584 REMARK 3 12 2.5444 - 2.4716 0.81 1663 115 0.2636 0.3215 REMARK 3 13 2.4716 - 2.4066 0.77 1544 109 0.2654 0.2948 REMARK 3 14 2.4066 - 2.3479 0.64 1333 100 0.2750 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3827 REMARK 3 ANGLE : 0.914 5198 REMARK 3 CHIRALITY : 0.051 551 REMARK 3 PLANARITY : 0.005 684 REMARK 3 DIHEDRAL : 5.894 2290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.8851 -18.3103 -19.0658 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.2597 REMARK 3 T33: 0.2432 T12: -0.0391 REMARK 3 T13: -0.1009 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.8341 L22: 0.5335 REMARK 3 L33: 1.1738 L12: -0.1711 REMARK 3 L13: -1.0554 L23: 0.0840 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: -0.1074 S13: 0.0262 REMARK 3 S21: -0.0168 S22: 0.1200 S23: 0.0429 REMARK 3 S31: 0.0353 S32: -0.1685 S33: -0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 74 THROUGH 75 OR REMARK 3 (RESID 76 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 77 THROUGH 295 OR (RESID 296 REMARK 3 THROUGH 297 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 298 THROUGH 305)) REMARK 3 SELECTION : (CHAIN B AND (RESID 74 THROUGH 98 OR REMARK 3 (RESID 99 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 100 THROUGH 176 OR (RESID 177 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 178 THROUGH 298 OR REMARK 3 (RESID 299 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 300 THROUGH 305)) REMARK 3 ATOM PAIRS NUMBER : 2184 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.348 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 104.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG20000, 20 % GLYCEROL, 0.03M REMARK 280 GLYCOLS, 0.1 M HEPES/MOPS PH7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.77667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.88833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.88833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.77667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 306 REMARK 465 GLU B 307 REMARK 465 GLU B 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 99 CD NE CZ NH1 NH2 REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 ARG B 76 CD NE CZ NH1 NH2 REMARK 470 ARG B 296 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 98 O HOH B 501 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 VAL B 74 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG B 182 CA - CB - CG ANGL. DEV. = -21.8 DEGREES REMARK 500 ARG B 188 CB - CG - CD ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG B 188 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 94 -178.58 -66.28 REMARK 500 ASN A 129 33.93 72.02 REMARK 500 PRO A 176 -168.21 -66.23 REMARK 500 ARG A 177 -3.41 62.66 REMARK 500 ASN B 129 34.63 71.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 637 DISTANCE = 7.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 195 OD2 144.5 REMARK 620 3 ASP A 227 OD1 121.6 88.2 REMARK 620 4 HOH A 502 O 64.1 89.7 170.2 REMARK 620 5 HOH A 523 O 75.8 86.8 88.9 100.5 REMARK 620 6 HOH A 545 O 109.1 89.4 87.4 83.0 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD1 REMARK 620 2 HOH A 530 O 86.1 REMARK 620 3 HOH A 549 O 83.8 90.4 REMARK 620 4 HOH A 578 O 87.9 164.7 103.0 REMARK 620 5 HOH A 585 O 88.3 75.1 164.0 90.7 REMARK 620 6 HOH A 605 O 176.3 93.9 92.5 93.0 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 190 OD2 REMARK 620 2 ASP B 195 OD2 174.4 REMARK 620 3 ASP B 227 OD1 92.9 90.1 REMARK 620 4 HOH B 514 O 98.2 76.7 99.8 REMARK 620 5 HOH B 515 O 77.7 100.7 160.7 98.2 REMARK 620 6 HOH B 546 O 98.9 86.1 85.6 161.8 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 195 OD1 REMARK 620 2 HOH B 521 O 75.4 REMARK 620 3 HOH B 534 O 82.0 84.8 REMARK 620 4 HOH B 541 O 104.6 164.0 111.2 REMARK 620 5 HOH B 565 O 92.4 81.0 165.6 83.0 REMARK 620 6 HOH B 568 O 158.9 89.3 82.2 94.2 99.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WRU RELATED DB: PDB DBREF 5WRT A 74 308 UNP Q4VUZ3 Q4VUZ3_TOXGO 74 308 DBREF 5WRT B 74 308 UNP Q4VUZ3 Q4VUZ3_TOXGO 74 308 SEQRES 1 A 235 VAL TYR ARG ARG LEU VAL SER GLY THR GLU GLY GLU LYS SEQRES 2 A 235 ASP PHE ARG VAL LEU LEU SER LYS LYS SER GLY GLU ARG SEQRES 3 A 235 LEU SER PRO TRP HIS ASP ILE PRO LEU PHE PRO ASN GLY SEQRES 4 A 235 ARG ASP ALA ARG PRO LEU LEU PHE ASN MET VAL VAL GLU SEQRES 5 A 235 ILE PRO LYS ASN THR ARG ARG LYS MET GLU MET GLN LEU SEQRES 6 A 235 ARG LEU PRO PHE THR PRO ILE MET GLN ASP LEU LYS LYS SEQRES 7 A 235 ASP GLY SER LEU ARG GLU TYR ALA SER THR LEU TYR TRP SEQRES 8 A 235 ASN TYR GLY ALA PHE PRO GLN THR TRP GLU ASP PRO ARG SEQRES 9 A 235 GLU PRO GLY GLY ARG GLU VAL PHE HIS ALA ARG GLY ASP SEQRES 10 A 235 GLY ASP PRO LEU ASP VAL VAL GLU ILE GLY SER GLU VAL SEQRES 11 A 235 LEU PRO VAL GLY GLY VAL VAL PRO VAL LYS VAL LEU GLY SEQRES 12 A 235 ALA LEU ALA MET ILE ASP GLY GLY GLU LEU ASP TRP LYS SEQRES 13 A 235 VAL LEU ALA ILE ARG GLU GLY ASP PRO LEU PHE SER GLN SEQRES 14 A 235 LEU ASN SER VAL ALA ASP VAL GLU ARG LEU CYS ARG GLY SEQRES 15 A 235 VAL VAL PRO GLY ILE ARG GLU TRP PHE ARG TRP TYR LYS SEQRES 16 A 235 LEU PRO THR ASP ASN VAL VAL ASN GLN PHE GLY HIS ASP SEQRES 17 A 235 GLU ALA ALA LEU PRO ALA ALA ASP ALA GLU ARG VAL VAL SEQRES 18 A 235 TYR ARG ALA HIS GLU HIS TYR LEU ARG LEU LEU SER GLU SEQRES 19 A 235 GLU SEQRES 1 B 235 VAL TYR ARG ARG LEU VAL SER GLY THR GLU GLY GLU LYS SEQRES 2 B 235 ASP PHE ARG VAL LEU LEU SER LYS LYS SER GLY GLU ARG SEQRES 3 B 235 LEU SER PRO TRP HIS ASP ILE PRO LEU PHE PRO ASN GLY SEQRES 4 B 235 ARG ASP ALA ARG PRO LEU LEU PHE ASN MET VAL VAL GLU SEQRES 5 B 235 ILE PRO LYS ASN THR ARG ARG LYS MET GLU MET GLN LEU SEQRES 6 B 235 ARG LEU PRO PHE THR PRO ILE MET GLN ASP LEU LYS LYS SEQRES 7 B 235 ASP GLY SER LEU ARG GLU TYR ALA SER THR LEU TYR TRP SEQRES 8 B 235 ASN TYR GLY ALA PHE PRO GLN THR TRP GLU ASP PRO ARG SEQRES 9 B 235 GLU PRO GLY GLY ARG GLU VAL PHE HIS ALA ARG GLY ASP SEQRES 10 B 235 GLY ASP PRO LEU ASP VAL VAL GLU ILE GLY SER GLU VAL SEQRES 11 B 235 LEU PRO VAL GLY GLY VAL VAL PRO VAL LYS VAL LEU GLY SEQRES 12 B 235 ALA LEU ALA MET ILE ASP GLY GLY GLU LEU ASP TRP LYS SEQRES 13 B 235 VAL LEU ALA ILE ARG GLU GLY ASP PRO LEU PHE SER GLN SEQRES 14 B 235 LEU ASN SER VAL ALA ASP VAL GLU ARG LEU CYS ARG GLY SEQRES 15 B 235 VAL VAL PRO GLY ILE ARG GLU TRP PHE ARG TRP TYR LYS SEQRES 16 B 235 LEU PRO THR ASP ASN VAL VAL ASN GLN PHE GLY HIS ASP SEQRES 17 B 235 GLU ALA ALA LEU PRO ALA ALA ASP ALA GLU ARG VAL VAL SEQRES 18 B 235 TYR ARG ALA HIS GLU HIS TYR LEU ARG LEU LEU SER GLU SEQRES 19 B 235 GLU HET MG A 401 1 HET MG A 402 1 HET MG B 401 1 HET MG B 402 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *226(H2 O) HELIX 1 AA1 GLY A 181 PHE A 185 5 5 HELIX 2 AA2 LEU A 239 LEU A 243 5 5 HELIX 3 AA3 SER A 245 CYS A 253 1 9 HELIX 4 AA4 GLY A 255 TYR A 267 1 13 HELIX 5 AA5 LYS A 268 ASN A 273 1 6 HELIX 6 AA6 HIS A 280 ALA A 283 5 4 HELIX 7 AA7 PRO A 286 SER A 306 1 21 HELIX 8 AA8 GLY B 181 PHE B 185 5 5 HELIX 9 AA9 LEU B 239 LEU B 243 5 5 HELIX 10 AB1 SER B 245 CYS B 253 1 9 HELIX 11 AB2 GLY B 255 TYR B 267 1 13 HELIX 12 AB3 LYS B 268 ASN B 273 1 6 HELIX 13 AB4 HIS B 280 ALA B 283 5 4 HELIX 14 AB5 ALA B 287 LEU B 305 1 19 SHEET 1 AA1 3 ARG A 76 SER A 80 0 SHEET 2 AA1 3 ARG A 89 SER A 93 -1 O SER A 93 N ARG A 76 SHEET 3 AA1 3 ARG A 99 LEU A 100 -1 O LEU A 100 N LEU A 92 SHEET 1 AA2 7 ARG A 188 GLY A 189 0 SHEET 2 AA2 7 GLU A 225 ARG A 234 1 O LEU A 226 N ARG A 188 SHEET 3 AA2 7 ASP A 195 GLU A 198 1 N VAL A 197 O VAL A 230 SHEET 4 AA2 7 ASN A 165 ALA A 168 -1 N ASN A 165 O GLU A 198 SHEET 5 AA2 7 PHE A 120 ILE A 126 -1 N ILE A 126 O TYR A 166 SHEET 6 AA2 7 VAL A 209 ASP A 222 -1 O VAL A 212 N PHE A 120 SHEET 7 AA2 7 GLN A 277 PHE A 278 -1 O GLN A 277 N ILE A 221 SHEET 1 AA3 4 ARG A 188 GLY A 189 0 SHEET 2 AA3 4 GLU A 225 ARG A 234 1 O LEU A 226 N ARG A 188 SHEET 3 AA3 4 VAL A 209 ASP A 222 -1 N MET A 220 O ASP A 227 SHEET 4 AA3 4 GLN A 277 PHE A 278 -1 O GLN A 277 N ILE A 221 SHEET 1 AA4 2 THR A 130 ARG A 132 0 SHEET 2 AA4 2 GLU A 157 LEU A 162 -1 O TYR A 158 N ARG A 131 SHEET 1 AA5 2 MET A 134 MET A 136 0 SHEET 2 AA5 2 ILE A 145 GLN A 147 -1 O MET A 146 N GLU A 135 SHEET 1 AA6 2 ARG B 76 SER B 80 0 SHEET 2 AA6 2 ARG B 89 SER B 93 -1 O LEU B 91 N LEU B 78 SHEET 1 AA7 7 ARG B 188 GLY B 189 0 SHEET 2 AA7 7 GLU B 225 ARG B 234 1 O LEU B 226 N ARG B 188 SHEET 3 AA7 7 ASP B 195 GLU B 198 1 N VAL B 197 O VAL B 230 SHEET 4 AA7 7 ASN B 165 ALA B 168 -1 N ASN B 165 O GLU B 198 SHEET 5 AA7 7 PHE B 120 ILE B 126 -1 N ILE B 126 O TYR B 166 SHEET 6 AA7 7 VAL B 209 ASP B 222 -1 O VAL B 212 N PHE B 120 SHEET 7 AA7 7 GLN B 277 PHE B 278 -1 O GLN B 277 N ILE B 221 SHEET 1 AA8 3 GLU B 225 ARG B 234 0 SHEET 2 AA8 3 VAL B 209 ASP B 222 -1 N GLY B 216 O LEU B 231 SHEET 3 AA8 3 LEU B 285 PRO B 286 -1 O LEU B 285 N ALA B 217 SHEET 1 AA9 2 THR B 130 ARG B 132 0 SHEET 2 AA9 2 GLU B 157 LEU B 162 -1 O LEU B 162 N THR B 130 SHEET 1 AB1 2 MET B 134 MET B 136 0 SHEET 2 AB1 2 ILE B 145 GLN B 147 -1 O MET B 146 N GLU B 135 LINK OD1 ASP A 190 MG MG A 401 1555 1555 2.11 LINK OD2 ASP A 195 MG MG A 401 1555 1555 2.01 LINK OD1 ASP A 195 MG MG A 402 1555 1555 2.13 LINK OD1 ASP A 227 MG MG A 401 1555 1555 2.00 LINK MG MG A 401 O HOH A 502 1555 1555 2.22 LINK MG MG A 401 O HOH A 523 1555 1555 2.09 LINK MG MG A 401 O HOH A 545 1555 1555 2.34 LINK MG MG A 402 O HOH A 530 1555 1555 2.23 LINK MG MG A 402 O HOH A 549 1555 1555 2.11 LINK MG MG A 402 O HOH A 578 1555 1555 2.00 LINK MG MG A 402 O HOH A 585 1555 1555 2.03 LINK MG MG A 402 O HOH A 605 1555 1555 2.07 LINK OD2 ASP B 190 MG MG B 402 1555 1555 1.89 LINK OD1 ASP B 195 MG MG B 401 1555 1555 2.08 LINK OD2 ASP B 195 MG MG B 402 1555 1555 1.98 LINK OD1 ASP B 227 MG MG B 402 1555 1555 1.98 LINK MG MG B 401 O HOH B 521 1555 1555 2.10 LINK MG MG B 401 O HOH B 534 1555 1555 2.01 LINK MG MG B 401 O HOH B 541 1555 1555 2.26 LINK MG MG B 401 O HOH B 565 1555 1555 2.02 LINK MG MG B 401 O HOH B 568 1555 1555 2.13 LINK MG MG B 402 O HOH B 514 1555 1555 2.04 LINK MG MG B 402 O HOH B 515 1555 1555 2.20 LINK MG MG B 402 O HOH B 546 1555 1555 2.36 CISPEP 1 ARG A 116 PRO A 117 0 -1.39 CISPEP 2 ARG B 116 PRO B 117 0 -0.84 SITE 1 AC1 6 ASP A 190 ASP A 195 ASP A 227 HOH A 502 SITE 2 AC1 6 HOH A 523 HOH A 545 SITE 1 AC2 6 ASP A 195 HOH A 530 HOH A 549 HOH A 578 SITE 2 AC2 6 HOH A 585 HOH A 605 SITE 1 AC3 7 TYR B 166 ASP B 195 HOH B 521 HOH B 534 SITE 2 AC3 7 HOH B 541 HOH B 565 HOH B 568 SITE 1 AC4 6 ASP B 190 ASP B 195 ASP B 227 HOH B 514 SITE 2 AC4 6 HOH B 515 HOH B 546 CRYST1 88.957 88.957 158.665 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011241 0.006490 0.000000 0.00000 SCALE2 0.000000 0.012980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006303 0.00000