HEADER METAL TRANSPORT 11-DEC-16 5WTD TITLE STRUCTURE OF HUMAN SERUM TRANSFERRIN BOUND RUTHENIUM AT N-LOBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSFERRIN,BETA-1 METAL-BINDING GLOBULIN,SIDEROPHILIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS RUTHENIUM TRANSFERRIN N-LOBE, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.SUN,M.WANG,T.P.LAI,H.ZHANG,Q.HAO REVDAT 3 08-NOV-23 5WTD 1 REMARK REVDAT 2 22-JUN-22 5WTD 1 JRNL LINK REVDAT 1 20-DEC-17 5WTD 0 JRNL AUTH M.WANG,H.WANG,X.XU,T.P.LAI,Y.ZHOU,Q.HAO,H.LI,H.SUN JRNL TITL BINDING OF RUTHENIUM AND OSMIUM AT NON‐IRON SITES OF JRNL TITL 2 TRANSFERRIN ACCOUNTS FOR THEIR IRON-INDEPENDENT CELLULAR JRNL TITL 3 UPTAKE. JRNL REF J.INORG.BIOCHEM. V. 234 11885 2022 JRNL REFN ISSN 0162-0134 JRNL PMID 35690040 JRNL DOI 10.1016/J.JINORGBIO.2022.111885 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 51927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 3480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1910 - 7.2953 0.97 2889 126 0.1830 0.2058 REMARK 3 2 7.2953 - 5.7976 1.00 2907 153 0.1941 0.2318 REMARK 3 3 5.7976 - 5.0668 1.00 2971 145 0.1797 0.1784 REMARK 3 4 5.0668 - 4.6044 0.99 2926 159 0.1503 0.1849 REMARK 3 5 4.6044 - 4.2749 0.99 2869 182 0.1463 0.1798 REMARK 3 6 4.2749 - 4.0232 1.00 2903 171 0.1553 0.2115 REMARK 3 7 4.0232 - 3.8219 0.99 2912 155 0.1608 0.2197 REMARK 3 8 3.8219 - 3.6557 0.99 2912 159 0.1591 0.1831 REMARK 3 9 3.6557 - 3.5151 0.99 2897 178 0.1723 0.2003 REMARK 3 10 3.5151 - 3.3939 0.99 2902 151 0.1771 0.2588 REMARK 3 11 3.3939 - 3.2878 0.99 2932 157 0.1849 0.2126 REMARK 3 12 3.2878 - 3.1939 0.99 2896 154 0.1835 0.2264 REMARK 3 13 3.1939 - 3.1098 0.98 2904 154 0.1978 0.2263 REMARK 3 14 3.1098 - 3.0340 0.98 2862 171 0.2072 0.2680 REMARK 3 15 3.0340 - 2.9651 0.96 2823 164 0.2123 0.2500 REMARK 3 16 2.9651 - 2.9020 0.92 2648 154 0.2154 0.2199 REMARK 3 17 2.9020 - 2.8440 0.86 2570 148 0.2058 0.2491 REMARK 3 18 2.8440 - 2.7903 0.78 2249 128 0.1948 0.2131 REMARK 3 19 2.7903 - 2.7405 0.71 2066 124 0.1966 0.2161 REMARK 3 20 2.7405 - 2.6941 0.66 1959 101 0.2096 0.2538 REMARK 3 21 2.6941 - 2.6506 0.61 1801 78 0.2118 0.2614 REMARK 3 22 2.6506 - 2.6098 0.59 1713 94 0.2133 0.2161 REMARK 3 23 2.6098 - 2.5715 0.56 1663 95 0.2322 0.2365 REMARK 3 24 2.5715 - 2.5353 0.54 1567 91 0.2448 0.2210 REMARK 3 25 2.5353 - 2.5010 0.54 1589 88 0.2509 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5151 REMARK 3 ANGLE : 0.719 6964 REMARK 3 CHIRALITY : 0.043 743 REMARK 3 PLANARITY : 0.004 903 REMARK 3 DIHEDRAL : 8.707 3085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2310 10.4521 -13.1863 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.3840 REMARK 3 T33: 0.0793 T12: 0.0661 REMARK 3 T13: 0.0259 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.0189 L22: 2.3910 REMARK 3 L33: 3.3042 L12: 0.4618 REMARK 3 L13: 0.3102 L23: 0.8520 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.3303 S13: 0.0285 REMARK 3 S21: -0.1728 S22: -0.0505 S23: -0.0544 REMARK 3 S31: -0.1889 S32: 0.0838 S33: 0.0394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9190 18.6875 18.6177 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.4338 REMARK 3 T33: 0.0894 T12: -0.0977 REMARK 3 T13: 0.0789 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 1.3131 L22: 2.6160 REMARK 3 L33: 2.5279 L12: 0.3772 REMARK 3 L13: 0.5259 L23: 0.1586 REMARK 3 S TENSOR REMARK 3 S11: 0.1584 S12: -0.1185 S13: 0.1140 REMARK 3 S21: 0.2610 S22: -0.1756 S23: 0.2251 REMARK 3 S31: -0.1705 S32: -0.1724 S33: 0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6575 16.7799 -8.3191 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.2982 REMARK 3 T33: 0.1178 T12: 0.0483 REMARK 3 T13: 0.0622 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.0920 L22: 2.3394 REMARK 3 L33: 3.3088 L12: 0.5754 REMARK 3 L13: 1.1234 L23: 0.9225 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.1452 S13: 0.1836 REMARK 3 S21: -0.2271 S22: -0.0972 S23: 0.1420 REMARK 3 S31: -0.2489 S32: 0.2095 S33: 0.0990 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2110 34.7260 0.8584 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.7686 REMARK 3 T33: 0.3180 T12: -0.3440 REMARK 3 T13: 0.0214 T23: 0.1128 REMARK 3 L TENSOR REMARK 3 L11: 3.9546 L22: 5.3419 REMARK 3 L33: 2.5656 L12: 0.3131 REMARK 3 L13: 0.2696 L23: -0.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.4722 S12: -0.3126 S13: -0.1460 REMARK 3 S21: 0.4472 S22: -0.4205 S23: -0.7689 REMARK 3 S31: -0.3309 S32: 0.8142 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 583 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0237 55.8624 -14.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.6524 T22: 0.4387 REMARK 3 T33: 0.2719 T12: -0.1930 REMARK 3 T13: 0.0996 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 3.3700 L22: 2.3084 REMARK 3 L33: 3.5736 L12: 0.7966 REMARK 3 L13: -1.2159 L23: -1.1225 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: -0.0497 S13: 0.4444 REMARK 3 S21: 0.6418 S22: -0.1117 S23: 0.5174 REMARK 3 S31: -0.3775 S32: -0.1189 S33: -0.2139 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 584 THROUGH 679 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4784 41.4322 3.1003 REMARK 3 T TENSOR REMARK 3 T11: 0.8101 T22: 0.7005 REMARK 3 T33: 0.3103 T12: -0.3390 REMARK 3 T13: 0.0914 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.0570 L22: 2.8519 REMARK 3 L33: 1.7635 L12: 0.6178 REMARK 3 L13: 0.2734 L23: -1.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.3607 S12: -0.3827 S13: 0.5867 REMARK 3 S21: 0.9076 S22: -0.3748 S23: -0.0190 REMARK 3 S31: -0.5690 S32: 0.5112 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5WTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99182 REMARK 200 MONOCHROMATOR : GRAPHITE FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.501 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X1B REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PIPES-NA 100 MM, DISODIUM MALONATE 8 REMARK 280 MM, PEG3350 17%, GLYCEROL 18%, PH 6.6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.54300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.54300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.55650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.67550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.55650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.67550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.54300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.55650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.67550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.54300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.55650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.67550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 333 REMARK 465 ALA A 334 REMARK 465 PRO A 335 REMARK 465 THR A 336 REMARK 465 ASP A 337 REMARK 465 GLU A 338 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 ASP A 416 REMARK 465 ASN A 417 REMARK 465 CYS A 418 REMARK 465 GLU A 419 REMARK 465 ASP A 420 REMARK 465 THR A 421 REMARK 465 PRO A 422 REMARK 465 GLU A 423 REMARK 465 VAL A 612 REMARK 465 THR A 613 REMARK 465 ASP A 614 REMARK 465 CYS A 615 REMARK 465 SER A 616 REMARK 465 GLY A 617 REMARK 465 ASN A 618 REMARK 465 PHE A 619 REMARK 465 CYS A 620 REMARK 465 LEU A 621 REMARK 465 PHE A 622 REMARK 465 ARG A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 ASP A 442 CG OD1 OD2 REMARK 470 ASN A 472 CG OD1 ND2 REMARK 470 HIS A 606 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 611 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 875 O HOH A 943 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 31 -179.96 -67.54 REMARK 500 TRP A 128 -62.58 -144.13 REMARK 500 PHE A 153 -60.25 -103.43 REMARK 500 CYS A 179 34.44 -97.34 REMARK 500 CYS A 241 72.37 -156.05 REMARK 500 LYS A 259 78.43 -107.22 REMARK 500 LEU A 294 -42.10 68.52 REMARK 500 LYS A 340 171.67 78.27 REMARK 500 ALA A 453 154.67 174.04 REMARK 500 TRP A 460 -65.36 -139.93 REMARK 500 LYS A 527 -32.94 -136.54 REMARK 500 GLU A 573 30.23 -90.05 REMARK 500 CYS A 577 65.29 -160.54 REMARK 500 SER A 610 52.32 -90.46 REMARK 500 THR A 626 -102.19 -109.83 REMARK 500 LEU A 630 -51.51 66.11 REMARK 500 HIS A 642 -112.16 56.78 REMARK 500 THR A 667 -120.56 -100.88 REMARK 500 SER A 668 97.14 72.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RU A 703 RU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 14 NE2 REMARK 620 2 HIS A 289 NE2 95.4 REMARK 620 3 HOH A 916 O 92.0 75.8 REMARK 620 4 HOH A 946 O 176.6 81.9 89.2 REMARK 620 5 HOH A 948 O 94.3 102.5 173.7 84.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 TYR A 426 OH 95.0 REMARK 620 3 TYR A 517 OH 174.2 88.0 REMARK 620 4 HIS A 585 NE2 91.3 100.2 93.0 REMARK 620 5 MLI A 702 O7 82.9 91.0 92.1 167.8 REMARK 620 6 MLI A 702 O9 93.3 171.3 83.5 82.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RU A 703 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS NATURAL VARIANT. DBREF 5WTD A 1 679 UNP P02787 TRFE_HUMAN 20 698 SEQADV 5WTD VAL A 429 UNP P02787 ILE 448 SEE SEQUENCE DETAILS SEQRES 1 A 679 VAL PRO ASP LYS THR VAL ARG TRP CYS ALA VAL SER GLU SEQRES 2 A 679 HIS GLU ALA THR LYS CYS GLN SER PHE ARG ASP HIS MET SEQRES 3 A 679 LYS SER VAL ILE PRO SER ASP GLY PRO SER VAL ALA CYS SEQRES 4 A 679 VAL LYS LYS ALA SER TYR LEU ASP CYS ILE ARG ALA ILE SEQRES 5 A 679 ALA ALA ASN GLU ALA ASP ALA VAL THR LEU ASP ALA GLY SEQRES 6 A 679 LEU VAL TYR ASP ALA TYR LEU ALA PRO ASN ASN LEU LYS SEQRES 7 A 679 PRO VAL VAL ALA GLU PHE TYR GLY SER LYS GLU ASP PRO SEQRES 8 A 679 GLN THR PHE TYR TYR ALA VAL ALA VAL VAL LYS LYS ASP SEQRES 9 A 679 SER GLY PHE GLN MET ASN GLN LEU ARG GLY LYS LYS SER SEQRES 10 A 679 CYS HIS THR GLY LEU GLY ARG SER ALA GLY TRP ASN ILE SEQRES 11 A 679 PRO ILE GLY LEU LEU TYR CYS ASP LEU PRO GLU PRO ARG SEQRES 12 A 679 LYS PRO LEU GLU LYS ALA VAL ALA ASN PHE PHE SER GLY SEQRES 13 A 679 SER CYS ALA PRO CYS ALA ASP GLY THR ASP PHE PRO GLN SEQRES 14 A 679 LEU CYS GLN LEU CYS PRO GLY CYS GLY CYS SER THR LEU SEQRES 15 A 679 ASN GLN TYR PHE GLY TYR SER GLY ALA PHE LYS CYS LEU SEQRES 16 A 679 LYS ASP GLY ALA GLY ASP VAL ALA PHE VAL LYS HIS SER SEQRES 17 A 679 THR ILE PHE GLU ASN LEU ALA ASN LYS ALA ASP ARG ASP SEQRES 18 A 679 GLN TYR GLU LEU LEU CYS LEU ASP ASN THR ARG LYS PRO SEQRES 19 A 679 VAL ASP GLU TYR LYS ASP CYS HIS LEU ALA GLN VAL PRO SEQRES 20 A 679 SER HIS THR VAL VAL ALA ARG SER MET GLY GLY LYS GLU SEQRES 21 A 679 ASP LEU ILE TRP GLU LEU LEU ASN GLN ALA GLN GLU HIS SEQRES 22 A 679 PHE GLY LYS ASP LYS SER LYS GLU PHE GLN LEU PHE SER SEQRES 23 A 679 SER PRO HIS GLY LYS ASP LEU LEU PHE LYS ASP SER ALA SEQRES 24 A 679 HIS GLY PHE LEU LYS VAL PRO PRO ARG MET ASP ALA LYS SEQRES 25 A 679 MET TYR LEU GLY TYR GLU TYR VAL THR ALA ILE ARG ASN SEQRES 26 A 679 LEU ARG GLU GLY THR CYS PRO GLU ALA PRO THR ASP GLU SEQRES 27 A 679 CYS LYS PRO VAL LYS TRP CYS ALA LEU SER HIS HIS GLU SEQRES 28 A 679 ARG LEU LYS CYS ASP GLU TRP SER VAL ASN SER VAL GLY SEQRES 29 A 679 LYS ILE GLU CYS VAL SER ALA GLU THR THR GLU ASP CYS SEQRES 30 A 679 ILE ALA LYS ILE MET ASN GLY GLU ALA ASP ALA MET SER SEQRES 31 A 679 LEU ASP GLY GLY PHE VAL TYR ILE ALA GLY LYS CYS GLY SEQRES 32 A 679 LEU VAL PRO VAL LEU ALA GLU ASN TYR ASN LYS SER ASP SEQRES 33 A 679 ASN CYS GLU ASP THR PRO GLU ALA GLY TYR PHE ALA VAL SEQRES 34 A 679 ALA VAL VAL LYS LYS SER ALA SER ASP LEU THR TRP ASP SEQRES 35 A 679 ASN LEU LYS GLY LYS LYS SER CYS HIS THR ALA VAL GLY SEQRES 36 A 679 ARG THR ALA GLY TRP ASN ILE PRO MET GLY LEU LEU TYR SEQRES 37 A 679 ASN LYS ILE ASN HIS CYS ARG PHE ASP GLU PHE PHE SER SEQRES 38 A 679 GLU GLY CYS ALA PRO GLY SER LYS LYS ASP SER SER LEU SEQRES 39 A 679 CYS LYS LEU CYS MET GLY SER GLY LEU ASN LEU CYS GLU SEQRES 40 A 679 PRO ASN ASN LYS GLU GLY TYR TYR GLY TYR THR GLY ALA SEQRES 41 A 679 PHE ARG CYS LEU VAL GLU LYS GLY ASP VAL ALA PHE VAL SEQRES 42 A 679 LYS HIS GLN THR VAL PRO GLN ASN THR GLY GLY LYS ASN SEQRES 43 A 679 PRO ASP PRO TRP ALA LYS ASN LEU ASN GLU LYS ASP TYR SEQRES 44 A 679 GLU LEU LEU CYS LEU ASP GLY THR ARG LYS PRO VAL GLU SEQRES 45 A 679 GLU TYR ALA ASN CYS HIS LEU ALA ARG ALA PRO ASN HIS SEQRES 46 A 679 ALA VAL VAL THR ARG LYS ASP LYS GLU ALA CYS VAL HIS SEQRES 47 A 679 LYS ILE LEU ARG GLN GLN GLN HIS LEU PHE GLY SER ASN SEQRES 48 A 679 VAL THR ASP CYS SER GLY ASN PHE CYS LEU PHE ARG SER SEQRES 49 A 679 GLU THR LYS ASP LEU LEU PHE ARG ASP ASP THR VAL CYS SEQRES 50 A 679 LEU ALA LYS LEU HIS ASP ARG ASN THR TYR GLU LYS TYR SEQRES 51 A 679 LEU GLY GLU GLU TYR VAL LYS ALA VAL GLY ASN LEU ARG SEQRES 52 A 679 LYS CYS SER THR SER SER LEU LEU GLU ALA CYS THR PHE SEQRES 53 A 679 ARG ARG PRO HET FE A 701 1 HET MLI A 702 7 HET RU A 703 1 HETNAM FE FE (III) ION HETNAM MLI MALONATE ION HETNAM RU RUTHENIUM ION FORMUL 2 FE FE 3+ FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 RU RU 3+ FORMUL 5 HOH *155(H2 O) HELIX 1 AA1 SER A 12 LYS A 27 1 16 HELIX 2 AA2 SER A 44 ALA A 54 1 11 HELIX 3 AA3 ASP A 63 LEU A 72 1 10 HELIX 4 AA4 GLN A 108 LEU A 112 5 5 HELIX 5 AA5 TRP A 128 TYR A 136 1 9 HELIX 6 AA6 CYS A 137 LEU A 139 5 3 HELIX 7 AA7 PRO A 145 ASN A 152 1 8 HELIX 8 AA8 PHE A 167 GLN A 172 5 6 HELIX 9 AA9 PHE A 186 ASP A 197 1 12 HELIX 10 AB1 SER A 208 LEU A 214 1 7 HELIX 11 AB2 ASN A 216 ASP A 221 1 6 HELIX 12 AB3 GLU A 237 CYS A 241 5 5 HELIX 13 AB4 LYS A 259 GLY A 275 1 17 HELIX 14 AB5 ASP A 310 GLY A 316 1 7 HELIX 15 AB6 GLY A 316 GLY A 329 1 14 HELIX 16 AB7 SER A 348 SER A 362 1 15 HELIX 17 AB8 THR A 373 ASN A 383 1 11 HELIX 18 AB9 ASP A 392 CYS A 402 1 11 HELIX 19 AC1 TRP A 460 ASN A 472 1 13 HELIX 20 AC2 ARG A 475 PHE A 479 5 5 HELIX 21 AC3 SER A 492 LYS A 496 5 5 HELIX 22 AC4 SER A 501 LEU A 505 5 5 HELIX 23 AC5 TYR A 515 LYS A 527 1 13 HELIX 24 AC6 GLN A 536 ASN A 541 1 6 HELIX 25 AC7 ASP A 548 ASN A 553 1 6 HELIX 26 AC8 ASN A 555 LYS A 557 5 3 HELIX 27 AC9 GLU A 572 CYS A 577 5 6 HELIX 28 AD1 ARG A 590 ASP A 592 5 3 HELIX 29 AD2 LYS A 593 GLY A 609 1 17 HELIX 30 AD3 THR A 646 GLY A 652 1 7 HELIX 31 AD4 GLY A 652 ARG A 663 1 12 HELIX 32 AD5 SER A 668 ARG A 678 1 11 SHEET 1 AA1 2 THR A 5 ALA A 10 0 SHEET 2 AA1 2 SER A 36 LYS A 41 1 O VAL A 40 N ALA A 10 SHEET 1 AA2 4 VAL A 60 LEU A 62 0 SHEET 2 AA2 4 THR A 250 ARG A 254 -1 O THR A 250 N LEU A 62 SHEET 3 AA2 4 LEU A 77 PHE A 84 -1 N VAL A 81 O VAL A 251 SHEET 4 AA2 4 GLY A 301 LYS A 304 -1 O LEU A 303 N ALA A 82 SHEET 1 AA3 6 GLY A 156 CYS A 158 0 SHEET 2 AA3 6 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA3 6 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 AA3 6 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 AA3 6 TYR A 223 LEU A 226 -1 O GLU A 224 N VAL A 101 SHEET 6 AA3 6 ARG A 232 LYS A 233 -1 O LYS A 233 N LEU A 225 SHEET 1 AA4 5 GLY A 156 CYS A 158 0 SHEET 2 AA4 5 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA4 5 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 AA4 5 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 AA4 5 ALA A 244 PRO A 247 -1 O VAL A 246 N TYR A 95 SHEET 1 AA5 2 VAL A 342 ALA A 346 0 SHEET 2 AA5 2 ILE A 366 SER A 370 1 O GLU A 367 N TRP A 344 SHEET 1 AA6 4 MET A 389 LEU A 391 0 SHEET 2 AA6 4 ALA A 586 THR A 589 -1 O ALA A 586 N LEU A 391 SHEET 3 AA6 4 VAL A 405 ASN A 411 -1 N LEU A 408 O VAL A 587 SHEET 4 AA6 4 CYS A 637 ALA A 639 -1 O ALA A 639 N ALA A 409 SHEET 1 AA7 6 GLU A 482 CYS A 484 0 SHEET 2 AA7 6 LYS A 448 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA7 6 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA7 6 TYR A 426 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA7 6 TYR A 559 LEU A 562 -1 O LEU A 562 N ALA A 430 SHEET 6 AA7 6 ARG A 568 PRO A 570 -1 O LYS A 569 N LEU A 561 SHEET 1 AA8 5 GLU A 482 CYS A 484 0 SHEET 2 AA8 5 LYS A 448 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA8 5 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA8 5 TYR A 426 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA8 5 ALA A 580 ALA A 582 -1 O ALA A 582 N TYR A 426 SSBOND 1 CYS A 9 CYS A 48 1555 1555 2.01 SSBOND 2 CYS A 19 CYS A 39 1555 1555 2.03 SSBOND 3 CYS A 118 CYS A 194 1555 1555 2.01 SSBOND 4 CYS A 137 CYS A 331 1555 1555 2.03 SSBOND 5 CYS A 158 CYS A 174 1555 1555 2.00 SSBOND 6 CYS A 161 CYS A 179 1555 1555 2.00 SSBOND 7 CYS A 171 CYS A 177 1555 1555 2.03 SSBOND 8 CYS A 227 CYS A 241 1555 1555 2.03 SSBOND 9 CYS A 339 CYS A 596 1555 1555 2.08 SSBOND 10 CYS A 345 CYS A 377 1555 1555 2.03 SSBOND 11 CYS A 355 CYS A 368 1555 1555 2.03 SSBOND 12 CYS A 402 CYS A 674 1555 1555 2.03 SSBOND 13 CYS A 450 CYS A 523 1555 1555 2.04 SSBOND 14 CYS A 474 CYS A 665 1555 1555 2.04 SSBOND 15 CYS A 484 CYS A 498 1555 1555 2.03 SSBOND 16 CYS A 495 CYS A 506 1555 1555 2.01 SSBOND 17 CYS A 563 CYS A 577 1555 1555 2.03 LINK NE2 HIS A 14 RU RU A 703 1555 1555 2.33 LINK NE2 HIS A 289 RU RU A 703 1555 1555 2.56 LINK OD1 ASP A 392 FE FE A 701 1555 1555 2.23 LINK OH TYR A 426 FE FE A 701 1555 1555 2.19 LINK OH TYR A 517 FE FE A 701 1555 1555 1.93 LINK NE2 HIS A 585 FE FE A 701 1555 1555 2.24 LINK FE FE A 701 O7 MLI A 702 1555 1555 1.98 LINK FE FE A 701 O9 MLI A 702 1555 1555 2.06 LINK RU RU A 703 O HOH A 916 1555 1555 2.23 LINK RU RU A 703 O HOH A 946 1555 1555 2.68 LINK RU RU A 703 O HOH A 948 1555 1555 2.55 CISPEP 1 ALA A 73 PRO A 74 0 2.37 CISPEP 2 GLU A 141 PRO A 142 0 2.13 CISPEP 3 LYS A 144 PRO A 145 0 -1.92 CISPEP 4 GLY A 258 LYS A 259 0 2.59 SITE 1 AC1 5 ASP A 392 TYR A 426 TYR A 517 HIS A 585 SITE 2 AC1 5 MLI A 702 SITE 1 AC2 11 ASP A 392 TYR A 426 THR A 452 ARG A 456 SITE 2 AC2 11 THR A 457 ALA A 458 GLY A 459 TYR A 517 SITE 3 AC2 11 HIS A 585 FE A 701 HOH A 820 SITE 1 AC3 6 HIS A 14 HIS A 289 HOH A 916 HOH A 946 SITE 2 AC3 6 HOH A 948 HOH A 954 CRYST1 137.113 157.351 107.086 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009338 0.00000