HEADER TOXIN 15-DEC-16 5WTZ TITLE CRYSTAL STRUCTURE OF C. PERFRINGENS IOTA-LIKE ENTEROTOXIN CPILE-A WITH TITLE 2 NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: BINARY ENTEROTOXIN OF CLOSTRIDIUM PERFRINGENS COMPONENT A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CPILE-A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: BECA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL TOXIN, ACTIN, CPILE-A, ADP-RIBOSYLATION, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR W.TONITI,T.YOSHIDA,T.TSURUMURA,D.IRIKURA,H.TSUGE REVDAT 3 08-NOV-23 5WTZ 1 REMARK REVDAT 2 26-FEB-20 5WTZ 1 REMARK REVDAT 1 01-MAR-17 5WTZ 0 JRNL AUTH W.TONITI,T.YOSHIDA,T.TSURUMURA,D.IRIKURA,C.MONMA,Y.KAMATA, JRNL AUTH 2 H.TSUGE JRNL TITL CRYSTAL STRUCTURE AND STRUCTURE-BASED MUTAGENESIS OF JRNL TITL 2 ACTIN-SPECIFIC ADP-RIBOSYLATING TOXIN CPILE-A AS NOVEL JRNL TITL 3 ENTEROTOXIN JRNL REF PLOS ONE V. 12 71278 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28199340 JRNL DOI 10.1371/JOURNAL.PONE.0171278 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6226 - 4.3451 1.00 2786 155 0.1439 0.1788 REMARK 3 2 4.3451 - 3.4491 1.00 2694 125 0.1476 0.1788 REMARK 3 3 3.4491 - 3.0132 1.00 2674 150 0.1894 0.2324 REMARK 3 4 3.0132 - 2.7377 1.00 2634 144 0.2056 0.2445 REMARK 3 5 2.7377 - 2.5415 1.00 2636 138 0.2124 0.2820 REMARK 3 6 2.5415 - 2.3917 1.00 2611 140 0.2072 0.2649 REMARK 3 7 2.3917 - 2.2719 1.00 2639 128 0.2109 0.2583 REMARK 3 8 2.2719 - 2.1730 1.00 2634 151 0.2117 0.2811 REMARK 3 9 2.1730 - 2.0894 1.00 2585 146 0.2176 0.2829 REMARK 3 10 2.0894 - 2.0173 1.00 2624 123 0.2288 0.2553 REMARK 3 11 2.0173 - 1.9542 1.00 2585 142 0.2416 0.2794 REMARK 3 12 1.9542 - 1.8983 1.00 2583 153 0.2390 0.3362 REMARK 3 13 1.8983 - 1.8483 0.99 2586 140 0.2586 0.3259 REMARK 3 14 1.8483 - 1.8033 0.92 2383 123 0.2538 0.2974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3476 REMARK 3 ANGLE : 1.157 4704 REMARK 3 CHIRALITY : 0.048 525 REMARK 3 PLANARITY : 0.004 598 REMARK 3 DIHEDRAL : 16.345 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8251 -6.0877 -22.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.4964 T22: 0.2245 REMARK 3 T33: 0.4875 T12: 0.0736 REMARK 3 T13: -0.2825 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.7132 L22: 1.2430 REMARK 3 L33: 0.7896 L12: -0.3540 REMARK 3 L13: 0.4906 L23: 0.4143 REMARK 3 S TENSOR REMARK 3 S11: -0.4066 S12: 0.0254 S13: 0.6484 REMARK 3 S21: -0.1635 S22: -0.0968 S23: 0.1093 REMARK 3 S31: -0.8107 S32: -0.0435 S33: 0.0497 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7313 -19.6964 -10.5134 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.2323 REMARK 3 T33: 0.2280 T12: 0.0602 REMARK 3 T13: -0.0973 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 1.4193 L22: 1.0693 REMARK 3 L33: 1.6856 L12: -0.1922 REMARK 3 L13: 0.4811 L23: 0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.1830 S12: -0.2677 S13: 0.2228 REMARK 3 S21: -0.1191 S22: -0.1128 S23: 0.2837 REMARK 3 S31: -0.2297 S32: -0.5338 S33: 0.1205 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5974 -19.4720 -12.6149 REMARK 3 T TENSOR REMARK 3 T11: 0.1514 T22: 0.1584 REMARK 3 T33: 0.1491 T12: -0.0219 REMARK 3 T13: -0.0459 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.5969 L22: 0.8221 REMARK 3 L33: 1.4294 L12: -0.3343 REMARK 3 L13: 0.1526 L23: 0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: -0.0492 S13: 0.4361 REMARK 3 S21: -0.0407 S22: 0.0172 S23: -0.1468 REMARK 3 S31: -0.1635 S32: 0.2160 S33: 0.1342 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 419 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2094 -31.8095 -19.0742 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1136 REMARK 3 T33: 0.0899 T12: 0.0213 REMARK 3 T13: 0.0208 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 2.3307 L22: 1.4342 REMARK 3 L33: 1.7486 L12: 0.1663 REMARK 3 L13: 0.4806 L23: 0.2660 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.1477 S13: -0.1169 REMARK 3 S21: -0.1325 S22: -0.0139 S23: 0.0236 REMARK 3 S31: 0.1564 S32: 0.2473 S33: 0.0291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GTT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS HCL, MAGNESIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.60600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.55650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.60600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.55650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.60600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.55650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.60600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.55650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OD1 ASN A 15 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 104 O HOH A 601 2.11 REMARK 500 O HOH A 830 O HOH A 881 2.13 REMARK 500 OE1 GLU A 235 O HOH A 602 2.16 REMARK 500 O HOH A 630 O HOH A 690 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG ASN A 15 OD1 ASN A 15 2555 1.24 REMARK 500 OD1 ASN A 15 ND2 ASN A 15 2555 1.97 REMARK 500 O HOH A 733 O HOH A 881 8444 2.13 REMARK 500 O HOH A 879 O HOH A 881 8444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 15 OD1 - CG - ND2 ANGL. DEV. = -21.4 DEGREES REMARK 500 ASN A 15 CB - CG - OD1 ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -81.08 52.10 REMARK 500 ASN A 46 64.52 -151.05 REMARK 500 ALA A 166 89.02 -151.18 REMARK 500 GLU A 215 -101.36 45.85 REMARK 500 ASP A 261 20.72 -152.63 REMARK 500 THR A 268 -167.90 -120.71 REMARK 500 ASN A 364 127.15 -37.22 REMARK 500 TYR A 381 48.41 -145.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 173 GLU A 174 146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WU0 RELATED DB: PDB DBREF 5WTZ A 1 419 UNP X5I2D7 X5I2D7_CLOPF 1 419 SEQADV 5WTZ GLY A -1 UNP X5I2D7 EXPRESSION TAG SEQADV 5WTZ SER A 0 UNP X5I2D7 EXPRESSION TAG SEQRES 1 A 421 GLY SER MET LEU ASP ASP ASN ARG PRO MET ASP PHE ALA SEQRES 2 A 421 LYS ASP LYS ASN SER ALA THR LEU TRP ALA LYS LYS ARG SEQRES 3 A 421 LYS GLN VAL TRP LEU ASN ASN LEU SER LYS ALA GLU SER SEQRES 4 A 421 THR SER ILE ASN ASN TYR ILE LYS ASN SER SER GLU ILE SEQRES 5 A 421 ASN SER TYR SER ILE LYS LYS LYS PHE ALA LEU ASP ASN SEQRES 6 A 421 TYR GLU GLY ILE GLU THR LEU ASN GLU ASP LEU LYS ASN SEQRES 7 A 421 ILE SER THR ALA VAL LYS LYS SER MET LEU THR LYS PRO SEQRES 8 A 421 LEU TYR VAL TYR TYR TYR GLU ALA ASN ASP LYS PHE GLY SEQRES 9 A 421 PHE ASN GLN ASN LEU GLU SER SER LEU ASP SER ASN ILE SEQRES 10 A 421 ILE ASP GLU GLU ALA ILE ASN ASN PHE ALA LYS LYS ILE SEQRES 11 A 421 SER ASP THR ASN PHE ILE GLN ASP GLY PHE LYS ASP VAL SEQRES 12 A 421 THR MET THR GLU PRO ASP ILE ASN SER LYS LEU PRO ILE SEQRES 13 A 421 LEU VAL HIS LEU LYS LEU PRO THR ASN THR PRO ALA ALA SEQRES 14 A 421 SER TYR GLY ASN ASP GLU GLU ASN LEU ARG VAL LEU ILE SEQRES 15 A 421 ASP GLN GLY TYR SER LEU LYS ALA THR GLY LEU SER ILE SEQRES 16 A 421 VAL THR ILE LYS GLY LYS GLN TYR ALA LYS VAL ASP ALA SEQRES 17 A 421 ASP LEU ILE LYS GLN LEU ASN PHE GLU ASN ASP VAL ILE SEQRES 18 A 421 SER ALA SER GLN TRP GLY GLU GLU ASN TYR ALA PRO TRP SEQRES 19 A 421 LEU LYS GLU LEU THR SER ASN GLU LEU ARG ASP ILE ASN SEQRES 20 A 421 ASN TYR LEU GLY GLY GLY TYR THR ALA ILE ASN LYS TYR SEQRES 21 A 421 LEU LEU ASP GLY THR ILE GLY GLU ASN THR SER LYS GLU SEQRES 22 A 421 ASP LEU GLU GLU LYS ILE SER ASN ILE SER SER ALA LEU SEQRES 23 A 421 LYS LYS ARG LYS ILE PRO GLU ASP ILE ILE THR TYR ARG SEQRES 24 A 421 ARG MET GLY PRO ASN GLU PHE GLY LEU ASP LEU ASN SER SEQRES 25 A 421 PRO ASP TYR ASP PHE ASN LYS VAL GLU ASN VAL SER LYS SEQRES 26 A 421 PHE LYS GLU LYS TRP LEU GLY LYS THR ILE PRO VAL LYS SEQRES 27 A 421 THR PHE ILE SER THR THR VAL LEU SER ASN ASN ILE SER SEQRES 28 A 421 ALA PHE ALA LYS ARG LYS LEU ILE LEU ARG LEU HIS LEU SEQRES 29 A 421 PRO ASN GLY SER ASN ALA ALA TYR VAL SER VAL ALA GLU SEQRES 30 A 421 GLY TYR LYS ASN GLU TYR GLU VAL LEU ILE ASP HIS GLY SEQRES 31 A 421 TYR SER TYR LYS ILE ASP ASN ILE THR GLU TYR TYR ASP SEQRES 32 A 421 GLU SER SER LEU GLY GLY LYS THR ASN LYS LEU ILE ILE SEQRES 33 A 421 ASP ALA THR LEU ILE HET NAD A 501 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 HOH *288(H2 O) HELIX 1 AA1 SER A 0 ARG A 6 1 7 HELIX 2 AA2 ASP A 13 ASN A 30 1 18 HELIX 3 AA3 SER A 33 ALA A 60 1 28 HELIX 4 AA4 ILE A 67 LYS A 82 1 16 HELIX 5 AA5 ALA A 97 GLY A 102 5 6 HELIX 6 AA6 ASP A 117 SER A 129 1 13 HELIX 7 AA7 ASP A 217 LEU A 236 1 20 HELIX 8 AA8 THR A 237 GLY A 249 1 13 HELIX 9 AA9 GLY A 251 GLY A 262 1 12 HELIX 10 AB1 SER A 269 LYS A 285 1 17 HELIX 11 AB2 GLY A 300 GLY A 305 5 6 HELIX 12 AB3 SER A 310 ASP A 314 5 5 HELIX 13 AB4 LYS A 317 LEU A 329 1 13 HELIX 14 AB5 ILE A 348 ALA A 352 5 5 HELIX 15 AB6 SER A 372 ALA A 374 5 3 SHEET 1 AA1 5 LEU A 90 GLU A 96 0 SHEET 2 AA1 5 ILE A 154 LEU A 160 -1 O VAL A 156 N TYR A 94 SHEET 3 AA1 5 LYS A 199 ILE A 209 1 O ALA A 206 N LYS A 159 SHEET 4 AA1 5 SER A 185 ILE A 196 -1 N SER A 192 O LYS A 203 SHEET 5 AA1 5 ASN A 132 ILE A 134 -1 N PHE A 133 O LEU A 186 SHEET 1 AA2 3 LYS A 139 THR A 142 0 SHEET 2 AA2 3 ARG A 177 ILE A 180 -1 O VAL A 178 N VAL A 141 SHEET 3 AA2 3 ALA A 166 TYR A 169 -1 N ALA A 167 O LEU A 179 SHEET 1 AA3 5 ILE A 293 MET A 299 0 SHEET 2 AA3 5 LEU A 356 LEU A 362 -1 O LEU A 362 N ILE A 293 SHEET 3 AA3 5 THR A 409 ILE A 419 1 O ILE A 414 N ILE A 357 SHEET 4 AA3 5 TYR A 389 ASP A 401 -1 N TYR A 399 O LYS A 411 SHEET 5 AA3 5 THR A 332 VAL A 335 -1 N ILE A 333 O TYR A 391 SHEET 1 AA4 3 ILE A 339 THR A 342 0 SHEET 2 AA4 3 GLU A 382 ILE A 385 -1 O ILE A 385 N ILE A 339 SHEET 3 AA4 3 ALA A 368 TYR A 370 -1 N ALA A 369 O LEU A 384 SITE 1 AC1 25 LEU A 248 TYR A 252 ASN A 256 LEU A 260 SITE 2 AC1 25 ARG A 297 ARG A 298 GLY A 300 ASN A 302 SITE 3 AC1 25 GLU A 303 THR A 337 SER A 340 THR A 341 SITE 4 AC1 25 PHE A 351 ARG A 354 GLU A 382 HOH A 648 SITE 5 AC1 25 HOH A 650 HOH A 670 HOH A 681 HOH A 701 SITE 6 AC1 25 HOH A 723 HOH A 743 HOH A 744 HOH A 745 SITE 7 AC1 25 HOH A 784 CRYST1 70.001 95.212 125.113 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007993 0.00000