HEADER OXIDOREDUCTASE 23-DEC-16 5WVA TITLE SERRATIA MARCESCENS SHORT-CHAIN DEHYDROGENASE/REDUCTASE F98Y/F202Y TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SERRATIA MARCESCENS, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, F98Y/F202Y KEYWDS 2 MUTANT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.LIU,Y.TSOU,W.C.WANG REVDAT 2 22-NOV-23 5WVA 1 REMARK REVDAT 1 28-FEB-18 5WVA 0 JRNL AUTH J.-S.LIU,Y.-C.KUAN,Y.TSOU,T.-Y.LIN,W.-H.HSU,M.-T.YANG, JRNL AUTH 2 J.-Y.LIN,W.-C.WANG JRNL TITL STRUCTURE-GUIDED DESIGN OF SERRATIA MARCESCENS SHORT-CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FOR STEREOSELECTIVE SYNTHESIS OF JRNL TITL 3 (R)-PHENYLEPHRINE. JRNL REF SCI REP V. 8 2316 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29396495 JRNL DOI 10.1038/S41598-018-19235-Y REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 66030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3365 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3274 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4553 ; 2.540 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7473 ; 1.235 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 6.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.913 ;23.955 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;12.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3965 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 1.859 ; 1.410 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1847 ; 1.859 ; 1.410 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2303 ; 2.627 ; 2.112 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2304 ; 2.626 ; 2.112 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 3.334 ; 1.792 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1518 ; 3.333 ; 1.792 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2251 ; 4.836 ; 2.557 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14975 ; 5.619 ;14.816 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14483 ; 5.441 ;14.239 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 67.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.10 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 85.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4ZGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES BUFFER (PH 7.0), 40% (V/V) REMARK 280 TACSIMATE (PH 7.0), 2MM SPERMINE, 2MM HEXAMINE COBALT (III) REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.51900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.96250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.75950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.96250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.27850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.96250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.75950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.96250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.96250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.27850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.51900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 SER A -30 REMARK 465 SER A -29 REMARK 465 GLY A -28 REMARK 465 LEU A -27 REMARK 465 VAL A -26 REMARK 465 PRO A -25 REMARK 465 ARG A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 MET A -20 REMARK 465 LYS A -19 REMARK 465 GLU A -18 REMARK 465 THR A -17 REMARK 465 ALA A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 LYS A -13 REMARK 465 PHE A -12 REMARK 465 GLU A -11 REMARK 465 ARG A -10 REMARK 465 GLN A -9 REMARK 465 HIS A -8 REMARK 465 MET A -7 REMARK 465 ASP A -6 REMARK 465 SER A -5 REMARK 465 PRO A -4 REMARK 465 ASP A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 MET B -37 REMARK 465 HIS B -36 REMARK 465 HIS B -35 REMARK 465 HIS B -34 REMARK 465 HIS B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 SER B -30 REMARK 465 SER B -29 REMARK 465 GLY B -28 REMARK 465 LEU B -27 REMARK 465 VAL B -26 REMARK 465 PRO B -25 REMARK 465 ARG B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 MET B -20 REMARK 465 LYS B -19 REMARK 465 GLU B -18 REMARK 465 THR B -17 REMARK 465 ALA B -16 REMARK 465 ALA B -15 REMARK 465 ALA B -14 REMARK 465 LYS B -13 REMARK 465 PHE B -12 REMARK 465 GLU B -11 REMARK 465 ARG B -10 REMARK 465 GLN B -9 REMARK 465 HIS B -8 REMARK 465 MET B -7 REMARK 465 ASP B -6 REMARK 465 SER B -5 REMARK 465 PRO B -4 REMARK 465 ASP B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 41 REMARK 465 ALA B 42 REMARK 465 SER B 43 REMARK 465 ALA B 44 REMARK 465 ASP B 45 REMARK 465 ARG B 46 REMARK 465 ALA B 47 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 VAL B 50 REMARK 465 ASP B 192 REMARK 465 THR B 193 REMARK 465 GLU B 194 REMARK 465 MET B 195 REMARK 465 ASN B 196 REMARK 465 PRO B 197 REMARK 465 ASP B 198 REMARK 465 ALA B 199 REMARK 465 GLY B 200 REMARK 465 GLU B 201 REMARK 465 TYR B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 GLN B 205 REMARK 465 LEU B 206 REMARK 465 LYS B 207 REMARK 465 GLN B 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 68 OG SER B 121 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 104 NH1 ARG B 179 7555 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 128 CD GLU A 128 OE1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 112 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 113 C - N - CA ANGL. DEV. = 28.8 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 218 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 70 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 LEU B 74 CB - CG - CD2 ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 135 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 MET B 210 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 -57.56 -122.15 REMARK 500 VAL A 119 -66.68 -122.14 REMARK 500 ASP A 244 14.46 -141.36 REMARK 500 VAL B 119 -66.09 -121.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 491 DISTANCE = 6.76 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WUL RELATED DB: PDB REMARK 900 RELATED ID: 5WUW RELATED DB: PDB DBREF1 5WVA A 1 249 UNP A0A192ICX3_SERMA DBREF2 5WVA A A0A192ICX3 1 249 DBREF1 5WVA B 1 249 UNP A0A192ICX3_SERMA DBREF2 5WVA B A0A192ICX3 1 249 SEQADV 5WVA MET A -37 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -36 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -35 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -34 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -33 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -32 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -31 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER A -30 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER A -29 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY A -28 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LEU A -27 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA VAL A -26 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PRO A -25 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ARG A -24 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY A -23 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER A -22 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY A -21 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA MET A -20 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LYS A -19 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLU A -18 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA THR A -17 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA A -16 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA A -15 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA A -14 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LYS A -13 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PHE A -12 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLU A -11 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ARG A -10 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLN A -9 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS A -8 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA MET A -7 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ASP A -6 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER A -5 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PRO A -4 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ASP A -3 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LEU A -2 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY A -1 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA THR A 0 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA TYR A 98 UNP A0A192ICX PHE 98 ENGINEERED MUTATION SEQADV 5WVA TYR A 202 UNP A0A192ICX PHE 202 ENGINEERED MUTATION SEQADV 5WVA MET B -37 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -36 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -35 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -34 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -33 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -32 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -31 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER B -30 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER B -29 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY B -28 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LEU B -27 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA VAL B -26 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PRO B -25 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ARG B -24 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY B -23 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER B -22 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY B -21 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA MET B -20 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LYS B -19 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLU B -18 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA THR B -17 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA B -16 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA B -15 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ALA B -14 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LYS B -13 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PHE B -12 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLU B -11 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ARG B -10 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLN B -9 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA HIS B -8 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA MET B -7 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ASP B -6 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA SER B -5 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA PRO B -4 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA ASP B -3 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA LEU B -2 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA GLY B -1 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA THR B 0 UNP A0A192ICX EXPRESSION TAG SEQADV 5WVA TYR B 98 UNP A0A192ICX PHE 98 ENGINEERED MUTATION SEQADV 5WVA TYR B 202 UNP A0A192ICX PHE 202 ENGINEERED MUTATION SEQRES 1 A 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 287 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 287 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR MET SEQRES 4 A 287 THR THR ALA HIS PRO LEU GLN GLY LYS VAL ALA PHE VAL SEQRES 5 A 287 GLN GLY GLY SER ARG GLY ILE GLY ALA ALA ILE VAL LYS SEQRES 6 A 287 ARG LEU ALA SER GLU GLY ALA ALA VAL ALA PHE THR TYR SEQRES 7 A 287 ALA ALA SER ALA ASP ARG ALA GLU ALA VAL ALA SER ALA SEQRES 8 A 287 VAL THR THR ALA GLY GLY LYS VAL LEU ALA ILE LYS ALA SEQRES 9 A 287 ASP SER ALA ASP ALA ALA ALA LEU GLN GLN ALA VAL ARG SEQRES 10 A 287 GLN ALA VAL SER HIS PHE GLY ASN LEU ASP ILE LEU VAL SEQRES 11 A 287 ASN ASN ALA GLY VAL TYR THR LEU GLY GLY THR GLU GLU SEQRES 12 A 287 LEU ALA LEU ASP ASP LEU ASP ARG MET LEU ALA VAL ASN SEQRES 13 A 287 VAL ARG SER VAL PHE VAL ALA SER GLN GLU ALA ALA ARG SEQRES 14 A 287 HIS MET ASN ASP GLY GLY ARG ILE ILE HIS ILE GLY SER SEQRES 15 A 287 THR ASN ALA GLU ARG VAL PRO PHE GLY GLY ALA ALA VAL SEQRES 16 A 287 TYR ALA MET SER LYS SER ALA LEU VAL GLY LEU THR LYS SEQRES 17 A 287 GLY MET ALA ARG ASP LEU GLY PRO ARG SER ILE THR VAL SEQRES 18 A 287 ASN ASN VAL GLN PRO GLY PRO VAL ASP THR GLU MET ASN SEQRES 19 A 287 PRO ASP ALA GLY GLU TYR ALA ASP GLN LEU LYS GLN LEU SEQRES 20 A 287 MET ALA ILE GLY ARG TYR GLY LYS ASP GLU GLU ILE ALA SEQRES 21 A 287 GLY PHE VAL ALA TYR LEU ALA GLY PRO GLN ALA GLY TYR SEQRES 22 A 287 ILE THR GLY ALA SER LEU SER ILE ASP GLY GLY PHE SER SEQRES 23 A 287 ALA SEQRES 1 B 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 287 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 B 287 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR MET SEQRES 4 B 287 THR THR ALA HIS PRO LEU GLN GLY LYS VAL ALA PHE VAL SEQRES 5 B 287 GLN GLY GLY SER ARG GLY ILE GLY ALA ALA ILE VAL LYS SEQRES 6 B 287 ARG LEU ALA SER GLU GLY ALA ALA VAL ALA PHE THR TYR SEQRES 7 B 287 ALA ALA SER ALA ASP ARG ALA GLU ALA VAL ALA SER ALA SEQRES 8 B 287 VAL THR THR ALA GLY GLY LYS VAL LEU ALA ILE LYS ALA SEQRES 9 B 287 ASP SER ALA ASP ALA ALA ALA LEU GLN GLN ALA VAL ARG SEQRES 10 B 287 GLN ALA VAL SER HIS PHE GLY ASN LEU ASP ILE LEU VAL SEQRES 11 B 287 ASN ASN ALA GLY VAL TYR THR LEU GLY GLY THR GLU GLU SEQRES 12 B 287 LEU ALA LEU ASP ASP LEU ASP ARG MET LEU ALA VAL ASN SEQRES 13 B 287 VAL ARG SER VAL PHE VAL ALA SER GLN GLU ALA ALA ARG SEQRES 14 B 287 HIS MET ASN ASP GLY GLY ARG ILE ILE HIS ILE GLY SER SEQRES 15 B 287 THR ASN ALA GLU ARG VAL PRO PHE GLY GLY ALA ALA VAL SEQRES 16 B 287 TYR ALA MET SER LYS SER ALA LEU VAL GLY LEU THR LYS SEQRES 17 B 287 GLY MET ALA ARG ASP LEU GLY PRO ARG SER ILE THR VAL SEQRES 18 B 287 ASN ASN VAL GLN PRO GLY PRO VAL ASP THR GLU MET ASN SEQRES 19 B 287 PRO ASP ALA GLY GLU TYR ALA ASP GLN LEU LYS GLN LEU SEQRES 20 B 287 MET ALA ILE GLY ARG TYR GLY LYS ASP GLU GLU ILE ALA SEQRES 21 B 287 GLY PHE VAL ALA TYR LEU ALA GLY PRO GLN ALA GLY TYR SEQRES 22 B 287 ILE THR GLY ALA SER LEU SER ILE ASP GLY GLY PHE SER SEQRES 23 B 287 ALA FORMUL 3 HOH *345(H2 O) HELIX 1 AA1 ARG A 19 GLU A 32 1 14 HELIX 2 AA2 SER A 43 ALA A 57 1 15 HELIX 3 AA3 ASP A 70 GLY A 86 1 17 HELIX 4 AA4 ALA A 107 VAL A 119 1 13 HELIX 5 AA5 VAL A 119 HIS A 132 1 14 HELIX 6 AA6 SER A 144 GLU A 148 5 5 HELIX 7 AA7 ALA A 155 GLY A 177 1 23 HELIX 8 AA8 PRO A 178 SER A 180 5 3 HELIX 9 AA9 ALA A 199 GLN A 208 1 10 HELIX 10 AB1 LYS A 217 GLY A 230 1 14 HELIX 11 AB2 ARG B 19 GLU B 32 1 14 HELIX 12 AB3 ASP B 70 GLY B 86 1 17 HELIX 13 AB4 ALA B 107 VAL B 119 1 13 HELIX 14 AB5 VAL B 119 ARG B 131 1 13 HELIX 15 AB6 SER B 144 GLU B 148 5 5 HELIX 16 AB7 ALA B 155 GLY B 177 1 23 HELIX 17 AB8 PRO B 178 SER B 180 5 3 HELIX 18 AB9 LYS B 217 GLY B 230 1 14 SHEET 1 AA1 7 VAL A 61 LYS A 65 0 SHEET 2 AA1 7 ALA A 35 TYR A 40 1 N PHE A 38 O ILE A 64 SHEET 3 AA1 7 VAL A 11 GLN A 15 1 N ALA A 12 O ALA A 35 SHEET 4 AA1 7 LEU A 88 ASN A 93 1 O VAL A 92 N GLN A 15 SHEET 5 AA1 7 MET A 133 ILE A 142 1 O ILE A 140 N LEU A 91 SHEET 6 AA1 7 THR A 182 PRO A 188 1 O ASN A 184 N HIS A 141 SHEET 7 AA1 7 SER A 240 ILE A 243 1 O LEU A 241 N GLN A 187 SHEET 1 AA2 8 SER B 52 VAL B 54 0 SHEET 2 AA2 8 VAL B 61 LYS B 65 -1 O LYS B 65 N SER B 52 SHEET 3 AA2 8 ALA B 35 TYR B 40 1 N PHE B 38 O ILE B 64 SHEET 4 AA2 8 VAL B 11 GLN B 15 1 N ALA B 12 O ALA B 35 SHEET 5 AA2 8 LEU B 88 ASN B 93 1 O ASP B 89 N VAL B 11 SHEET 6 AA2 8 MET B 133 ILE B 142 1 O ILE B 140 N ASN B 93 SHEET 7 AA2 8 THR B 182 PRO B 188 1 O VAL B 186 N HIS B 141 SHEET 8 AA2 8 SER B 240 ILE B 243 1 O LEU B 241 N GLN B 187 CRYST1 83.925 83.925 115.038 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008693 0.00000