HEADER APOPTOSIS 24-DEC-16 5WVC TITLE STRUCTURE OF THE CARD-CARD DISK COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOTIC PROTEASE-ACTIVATING FACTOR 1; COMPND 3 CHAIN: C, A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1-95; COMPND 5 SYNONYM: APAF-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CASPASE; COMPND 9 CHAIN: D, B, F; COMPND 10 FRAGMENT: UNP RESIDUES 1-128; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APAF1, KIAA0413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN INTERACTION, SIGNALING PROTEIN COMPLEX, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.C.LIN,Y.C.LO,T.W.SU REVDAT 2 06-NOV-24 5WVC 1 REMARK REVDAT 1 19-APR-17 5WVC 0 JRNL AUTH T.W.SU,C.Y.YANG,W.P.KAO,B.J.KUO,S.M.LIN,J.Y.LIN,Y.C.LO, JRNL AUTH 2 S.C.LIN JRNL TITL STRUCTURAL INSIGHTS INTO DD-FOLD ASSEMBLY AND CASPASE-9 JRNL TITL 2 ACTIVATION BY THE APAF-1 APOPTOSOME. JRNL REF STRUCTURE V. 25 407 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28111022 JRNL DOI 10.1016/J.STR.2016.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 28208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8530 - 7.1604 0.95 1899 146 0.1317 0.1372 REMARK 3 2 7.1604 - 5.7060 0.99 1911 151 0.2001 0.2527 REMARK 3 3 5.7060 - 4.9914 0.98 1891 141 0.1890 0.2153 REMARK 3 4 4.9914 - 4.5380 0.97 1874 146 0.1756 0.2014 REMARK 3 5 4.5380 - 4.2145 0.97 1858 144 0.1677 0.2095 REMARK 3 6 4.2145 - 3.9670 0.98 1857 143 0.1943 0.2095 REMARK 3 7 3.9670 - 3.7691 0.98 1909 141 0.2030 0.2439 REMARK 3 8 3.7691 - 3.6055 0.99 1852 137 0.2131 0.2826 REMARK 3 9 3.6055 - 3.4671 0.99 1885 146 0.2199 0.2524 REMARK 3 10 3.4671 - 3.3477 0.99 1886 146 0.2384 0.2649 REMARK 3 11 3.3477 - 3.2433 0.99 1881 140 0.2615 0.3135 REMARK 3 12 3.2433 - 3.1508 0.98 1865 142 0.2931 0.3001 REMARK 3 13 3.1508 - 3.0680 0.98 1859 145 0.3006 0.3550 REMARK 3 14 3.0680 - 2.9933 0.93 1777 136 0.3195 0.3787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4851 REMARK 3 ANGLE : 0.672 6505 REMARK 3 CHIRALITY : 0.025 731 REMARK 3 PLANARITY : 0.003 848 REMARK 3 DIHEDRAL : 13.570 1918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND ((RESSEQ 1:95)) REMARK 3 ORIGIN FOR THE GROUP (A): 79.1266 -52.4116 -11.0212 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.5783 REMARK 3 T33: 0.3062 T12: -0.1547 REMARK 3 T13: 0.0464 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 4.4771 L22: 7.1109 REMARK 3 L33: 8.2374 L12: 0.3512 REMARK 3 L13: 0.1170 L23: 1.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.2042 S13: 0.0060 REMARK 3 S21: 0.0154 S22: 0.2058 S23: -0.1138 REMARK 3 S31: -0.3303 S32: -0.3112 S33: -0.2673 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 199:300)) REMARK 3 ORIGIN FOR THE GROUP (A): 92.8435 -73.9771 -14.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.6529 REMARK 3 T33: 0.3728 T12: 0.0560 REMARK 3 T13: -0.0248 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 5.1402 L22: 6.3990 REMARK 3 L33: 7.4638 L12: 1.4478 REMARK 3 L13: -1.2780 L23: 0.5742 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.0308 S13: -0.0672 REMARK 3 S21: 0.1054 S22: 0.1467 S23: -0.3253 REMARK 3 S31: 0.4060 S32: 0.2908 S33: -0.1851 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:95)) REMARK 3 ORIGIN FOR THE GROUP (A): 76.2482 -81.7910 -33.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.5465 T22: 0.9156 REMARK 3 T33: 0.4800 T12: -0.2192 REMARK 3 T13: 0.0153 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 4.1284 L22: 7.9360 REMARK 3 L33: 3.6267 L12: -0.1466 REMARK 3 L13: 2.5807 L23: 2.7946 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.4123 S13: -0.1495 REMARK 3 S21: 0.0859 S22: -0.0262 S23: 0.5902 REMARK 3 S31: 0.6110 S32: -0.2998 S33: 0.0886 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND ((RESSEQ 199:301)) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2068 -65.0154 7.1142 REMARK 3 T TENSOR REMARK 3 T11: 0.4894 T22: 0.7562 REMARK 3 T33: 0.3794 T12: -0.2680 REMARK 3 T13: -0.0132 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 3.4300 L22: 6.5293 REMARK 3 L33: 6.3639 L12: 1.0740 REMARK 3 L13: -0.3879 L23: 2.0531 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.4733 S13: 0.1399 REMARK 3 S21: 0.0265 S22: -0.2997 S23: 0.3101 REMARK 3 S31: -0.1408 S32: 0.2516 S33: 0.2049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND ((RESSEQ 1:94)) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5228 -57.6040 -5.4821 REMARK 3 T TENSOR REMARK 3 T11: 0.5103 T22: 0.8668 REMARK 3 T33: 0.6154 T12: -0.2093 REMARK 3 T13: -0.1466 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 2.6041 L22: 6.3434 REMARK 3 L33: 8.1139 L12: -1.9294 REMARK 3 L13: -4.1444 L23: -0.4524 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: 0.3107 S13: -0.0681 REMARK 3 S21: -0.3833 S22: -0.1900 S23: 0.3233 REMARK 3 S31: -0.7979 S32: -0.6222 S33: 0.1245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' AND ((RESSEQ 199:301)) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5426 -78.8858 -20.5605 REMARK 3 T TENSOR REMARK 3 T11: 0.4945 T22: 0.7659 REMARK 3 T33: 0.5450 T12: -0.2902 REMARK 3 T13: -0.0576 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 8.0747 L22: 5.5722 REMARK 3 L33: 5.4846 L12: 2.0295 REMARK 3 L13: 0.7410 L23: 1.3701 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: -0.0317 S13: -0.0973 REMARK 3 S21: -0.2187 S22: 0.0544 S23: -0.1610 REMARK 3 S31: 0.0426 S32: 0.4162 S33: -0.1074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.993 REMARK 200 RESOLUTION RANGE LOW (A) : 24.852 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4I, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.94267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.88533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.41400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.35667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.47133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 178 REMARK 465 GLY D 179 REMARK 465 SER D 180 REMARK 465 SER D 181 REMARK 465 HIS D 182 REMARK 465 HIS D 183 REMARK 465 HIS D 184 REMARK 465 HIS D 185 REMARK 465 HIS D 186 REMARK 465 HIS D 187 REMARK 465 SER D 188 REMARK 465 SER D 189 REMARK 465 GLY D 190 REMARK 465 LEU D 191 REMARK 465 VAL D 192 REMARK 465 PRO D 193 REMARK 465 ARG D 194 REMARK 465 GLY D 195 REMARK 465 SER D 196 REMARK 465 HIS D 197 REMARK 465 MET D 198 REMARK 465 THR D 302 REMARK 465 LEU D 303 REMARK 465 GLU D 304 REMARK 465 ASN D 305 REMARK 465 LEU D 306 REMARK 465 THR D 307 REMARK 465 PRO D 308 REMARK 465 VAL D 309 REMARK 465 VAL D 310 REMARK 465 LEU D 311 REMARK 465 ARG D 312 REMARK 465 PRO D 313 REMARK 465 GLU D 314 REMARK 465 ILE D 315 REMARK 465 ARG D 316 REMARK 465 LYS D 317 REMARK 465 PRO D 318 REMARK 465 GLU D 319 REMARK 465 VAL D 320 REMARK 465 LEU D 321 REMARK 465 ARG D 322 REMARK 465 PRO D 323 REMARK 465 GLU D 324 REMARK 465 THR D 325 REMARK 465 PRO D 326 REMARK 465 ARG D 327 REMARK 465 PRO D 328 REMARK 465 MET B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 SER B 188 REMARK 465 SER B 189 REMARK 465 GLY B 190 REMARK 465 LEU B 191 REMARK 465 VAL B 192 REMARK 465 PRO B 193 REMARK 465 ARG B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 HIS B 197 REMARK 465 MET B 198 REMARK 465 THR B 302 REMARK 465 LEU B 303 REMARK 465 GLU B 304 REMARK 465 ASN B 305 REMARK 465 LEU B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 VAL B 309 REMARK 465 VAL B 310 REMARK 465 LEU B 311 REMARK 465 ARG B 312 REMARK 465 PRO B 313 REMARK 465 GLU B 314 REMARK 465 ILE B 315 REMARK 465 ARG B 316 REMARK 465 LYS B 317 REMARK 465 PRO B 318 REMARK 465 GLU B 319 REMARK 465 VAL B 320 REMARK 465 LEU B 321 REMARK 465 ARG B 322 REMARK 465 PRO B 323 REMARK 465 GLU B 324 REMARK 465 THR B 325 REMARK 465 PRO B 326 REMARK 465 ARG B 327 REMARK 465 PRO B 328 REMARK 465 SER E 95 REMARK 465 MET F 178 REMARK 465 GLY F 179 REMARK 465 SER F 180 REMARK 465 SER F 181 REMARK 465 HIS F 182 REMARK 465 HIS F 183 REMARK 465 HIS F 184 REMARK 465 HIS F 185 REMARK 465 HIS F 186 REMARK 465 HIS F 187 REMARK 465 SER F 188 REMARK 465 SER F 189 REMARK 465 GLY F 190 REMARK 465 LEU F 191 REMARK 465 VAL F 192 REMARK 465 PRO F 193 REMARK 465 ARG F 194 REMARK 465 GLY F 195 REMARK 465 SER F 196 REMARK 465 HIS F 197 REMARK 465 MET F 198 REMARK 465 THR F 302 REMARK 465 LEU F 303 REMARK 465 GLU F 304 REMARK 465 ASN F 305 REMARK 465 LEU F 306 REMARK 465 THR F 307 REMARK 465 PRO F 308 REMARK 465 VAL F 309 REMARK 465 VAL F 310 REMARK 465 LEU F 311 REMARK 465 ARG F 312 REMARK 465 PRO F 313 REMARK 465 GLU F 314 REMARK 465 ILE F 315 REMARK 465 ARG F 316 REMARK 465 LYS F 317 REMARK 465 PRO F 318 REMARK 465 GLU F 319 REMARK 465 VAL F 320 REMARK 465 LEU F 321 REMARK 465 ARG F 322 REMARK 465 PRO F 323 REMARK 465 GLU F 324 REMARK 465 THR F 325 REMARK 465 PRO F 326 REMARK 465 ARG F 327 REMARK 465 PRO F 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CSO D 212 44.28 -99.05 REMARK 500 ASP D 223 -70.55 -58.15 REMARK 500 CSO B 212 31.84 -95.36 REMARK 500 GLN B 282 52.10 -97.35 REMARK 500 ALA E 3 -93.88 -66.19 REMARK 500 LYS E 63 -167.92 -79.72 REMARK 500 ASP E 64 -164.68 -113.76 REMARK 500 ASP E 89 39.15 -78.26 REMARK 500 PRO E 92 -168.67 -67.57 REMARK 500 GLN F 282 71.44 -100.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD F 1201 DBREF 5WVC C 1 95 UNP O14727 APAF_HUMAN 1 95 DBREF 5WVC D 201 328 UNP A8K7U6 A8K7U6_HUMAN 1 128 DBREF 5WVC A 1 95 UNP O14727 APAF_HUMAN 1 95 DBREF 5WVC B 201 328 UNP A8K7U6 A8K7U6_HUMAN 1 128 DBREF 5WVC E 1 95 UNP O14727 APAF_HUMAN 1 95 DBREF 5WVC F 201 328 UNP A8K7U6 A8K7U6_HUMAN 1 128 SEQADV 5WVC MET D 178 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY D 179 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 180 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 181 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 182 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 183 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 184 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 185 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 186 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 187 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 188 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 189 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY D 190 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC LEU D 191 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC VAL D 192 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC PRO D 193 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ARG D 194 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY D 195 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 196 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS D 197 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC MET D 198 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ALA D 199 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER D 200 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC MET B 178 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY B 179 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 180 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 181 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 182 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 183 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 184 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 185 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 186 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 187 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 188 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 189 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY B 190 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC LEU B 191 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC VAL B 192 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC PRO B 193 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ARG B 194 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY B 195 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 196 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS B 197 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC MET B 198 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ALA B 199 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER B 200 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC MET F 178 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY F 179 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 180 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 181 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 182 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 183 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 184 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 185 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 186 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 187 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 188 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 189 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY F 190 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC LEU F 191 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC VAL F 192 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC PRO F 193 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ARG F 194 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC GLY F 195 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 196 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC HIS F 197 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC MET F 198 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC ALA F 199 UNP A8K7U6 EXPRESSION TAG SEQADV 5WVC SER F 200 UNP A8K7U6 EXPRESSION TAG SEQRES 1 C 95 MET ASP ALA LYS ALA ARG ASN CYS LEU LEU GLN HIS ARG SEQRES 2 C 95 GLU ALA LEU GLU LYS ASP ILE LYS THR SER TYR ILE MET SEQRES 3 C 95 ASP HIS MET ILE SER ASP GLY PHE LEU THR ILE SER GLU SEQRES 4 C 95 GLU GLU LYS VAL ARG ASN GLU PRO THR GLN GLN GLN ARG SEQRES 5 C 95 ALA ALA MET LEU ILE LYS MET ILE LEU LYS LYS ASP ASN SEQRES 6 C 95 ASP SER TYR VAL SER PHE TYR ASN ALA LEU LEU HIS GLU SEQRES 7 C 95 GLY TYR LYS ASP LEU ALA ALA LEU LEU HIS ASP GLY ILE SEQRES 8 C 95 PRO VAL VAL SER SEQRES 1 D 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 151 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ASP GLU SEQRES 3 D 151 ALA ASP ARG ARG LEU LEU ARG ARG CSO ARG LEU ARG LEU SEQRES 4 D 151 VAL GLU GLU LEU GLN VAL ASP GLN LEU TRP ASP VAL LEU SEQRES 5 D 151 LEU SER ARG GLU LEU PHE ARG PRO HIS MET ILE GLU ASP SEQRES 6 D 151 ILE GLN ARG ALA GLY SER GLY SER ARG ARG ASP GLN ALA SEQRES 7 D 151 ARG GLN LEU ILE ILE ASP LEU GLU THR ARG GLY SER GLN SEQRES 8 D 151 ALA LEU PRO LEU PHE ILE SER CYS LEU GLU ASP THR GLY SEQRES 9 D 151 GLN ASP MET LEU ALA SER PHE LEU ARG THR ASN ARG GLN SEQRES 10 D 151 ALA ALA LYS LEU SER LYS PRO THR LEU GLU ASN LEU THR SEQRES 11 D 151 PRO VAL VAL LEU ARG PRO GLU ILE ARG LYS PRO GLU VAL SEQRES 12 D 151 LEU ARG PRO GLU THR PRO ARG PRO SEQRES 1 A 95 MET ASP ALA LYS ALA ARG ASN CYS LEU LEU GLN HIS ARG SEQRES 2 A 95 GLU ALA LEU GLU LYS ASP ILE LYS THR SER TYR ILE MET SEQRES 3 A 95 ASP HIS MET ILE SER ASP GLY PHE LEU THR ILE SER GLU SEQRES 4 A 95 GLU GLU LYS VAL ARG ASN GLU PRO THR GLN GLN GLN ARG SEQRES 5 A 95 ALA ALA MET LEU ILE LYS MET ILE LEU LYS LYS ASP ASN SEQRES 6 A 95 ASP SER TYR VAL SER PHE TYR ASN ALA LEU LEU HIS GLU SEQRES 7 A 95 GLY TYR LYS ASP LEU ALA ALA LEU LEU HIS ASP GLY ILE SEQRES 8 A 95 PRO VAL VAL SER SEQRES 1 B 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 151 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ASP GLU SEQRES 3 B 151 ALA ASP ARG ARG LEU LEU ARG ARG CSO ARG LEU ARG LEU SEQRES 4 B 151 VAL GLU GLU LEU GLN VAL ASP GLN LEU TRP ASP VAL LEU SEQRES 5 B 151 LEU SER ARG GLU LEU PHE ARG PRO HIS MET ILE GLU ASP SEQRES 6 B 151 ILE GLN ARG ALA GLY SER GLY SER ARG ARG ASP GLN ALA SEQRES 7 B 151 ARG GLN LEU ILE ILE ASP LEU GLU THR ARG GLY SER GLN SEQRES 8 B 151 ALA LEU PRO LEU PHE ILE SER CYS LEU GLU ASP THR GLY SEQRES 9 B 151 GLN ASP MET LEU ALA SER PHE LEU ARG THR ASN ARG GLN SEQRES 10 B 151 ALA ALA LYS LEU SER LYS PRO THR LEU GLU ASN LEU THR SEQRES 11 B 151 PRO VAL VAL LEU ARG PRO GLU ILE ARG LYS PRO GLU VAL SEQRES 12 B 151 LEU ARG PRO GLU THR PRO ARG PRO SEQRES 1 E 95 MET ASP ALA LYS ALA ARG ASN CYS LEU LEU GLN HIS ARG SEQRES 2 E 95 GLU ALA LEU GLU LYS ASP ILE LYS THR SER TYR ILE MET SEQRES 3 E 95 ASP HIS MET ILE SER ASP GLY PHE LEU THR ILE SER GLU SEQRES 4 E 95 GLU GLU LYS VAL ARG ASN GLU PRO THR GLN GLN GLN ARG SEQRES 5 E 95 ALA ALA MET LEU ILE LYS MET ILE LEU LYS LYS ASP ASN SEQRES 6 E 95 ASP SER TYR VAL SER PHE TYR ASN ALA LEU LEU HIS GLU SEQRES 7 E 95 GLY TYR LYS ASP LEU ALA ALA LEU LEU HIS ASP GLY ILE SEQRES 8 E 95 PRO VAL VAL SER SEQRES 1 F 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 151 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ASP GLU SEQRES 3 F 151 ALA ASP ARG ARG LEU LEU ARG ARG CSO ARG LEU ARG LEU SEQRES 4 F 151 VAL GLU GLU LEU GLN VAL ASP GLN LEU TRP ASP VAL LEU SEQRES 5 F 151 LEU SER ARG GLU LEU PHE ARG PRO HIS MET ILE GLU ASP SEQRES 6 F 151 ILE GLN ARG ALA GLY SER GLY SER ARG ARG ASP GLN ALA SEQRES 7 F 151 ARG GLN LEU ILE ILE ASP LEU GLU THR ARG GLY SER GLN SEQRES 8 F 151 ALA LEU PRO LEU PHE ILE SER CYS LEU GLU ASP THR GLY SEQRES 9 F 151 GLN ASP MET LEU ALA SER PHE LEU ARG THR ASN ARG GLN SEQRES 10 F 151 ALA ALA LYS LEU SER LYS PRO THR LEU GLU ASN LEU THR SEQRES 11 F 151 PRO VAL VAL LEU ARG PRO GLU ILE ARG LYS PRO GLU VAL SEQRES 12 F 151 LEU ARG PRO GLU THR PRO ARG PRO MODRES 5WVC CSO D 212 CYS MODIFIED RESIDUE MODRES 5WVC CSO B 212 CYS MODIFIED RESIDUE MODRES 5WVC CSO F 212 CYS MODIFIED RESIDUE HET CSO D 212 7 HET CSO B 212 7 HET CSO F 212 7 HET IOD C 101 1 HET IOD C 102 1 HET IOD D 401 1 HET IOD D 402 1 HET IOD D 403 1 HET IOD D 404 1 HET IOD B 401 1 HET IOD B 402 1 HET IOD E 101 1 HET IOD F1201 1 HET IOD F1202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM IOD IODIDE ION FORMUL 2 CSO 3(C3 H7 N O3 S) FORMUL 7 IOD 11(I 1-) HELIX 1 AA1 ASP C 2 HIS C 12 1 11 HELIX 2 AA2 HIS C 12 ILE C 20 1 9 HELIX 3 AA3 LYS C 21 GLY C 33 1 13 HELIX 4 AA4 THR C 36 ASN C 45 1 10 HELIX 5 AA5 THR C 48 LYS C 62 1 15 HELIX 6 AA6 ASP C 64 GLU C 78 1 15 HELIX 7 AA7 TYR C 80 ASP C 89 1 10 HELIX 8 AA8 ASP D 202 CSO D 212 1 11 HELIX 9 AA9 CSO D 212 LEU D 220 1 9 HELIX 10 AB1 GLN D 224 ARG D 232 1 9 HELIX 11 AB2 ARG D 236 ARG D 245 1 10 HELIX 12 AB3 SER D 250 LEU D 262 1 13 HELIX 13 AB4 GLU D 263 ARG D 265 5 3 HELIX 14 AB5 GLN D 268 THR D 280 1 13 HELIX 15 AB6 GLN D 282 LYS D 300 1 19 HELIX 16 AB7 ASP A 2 HIS A 12 1 11 HELIX 17 AB8 HIS A 12 LYS A 18 1 7 HELIX 18 AB9 LYS A 21 GLY A 33 1 13 HELIX 19 AC1 THR A 36 ASN A 45 1 10 HELIX 20 AC2 THR A 48 LEU A 61 1 14 HELIX 21 AC3 ASP A 64 GLU A 78 1 15 HELIX 22 AC4 TYR A 80 ASP A 89 1 10 HELIX 23 AC5 ASP B 202 CSO B 212 1 11 HELIX 24 AC6 CSO B 212 LEU B 220 1 9 HELIX 25 AC7 GLN B 224 ARG B 232 1 9 HELIX 26 AC8 ARG B 236 ALA B 246 1 11 HELIX 27 AC9 SER B 250 LEU B 262 1 13 HELIX 28 AD1 GLU B 263 ARG B 265 5 3 HELIX 29 AD2 GLY B 266 SER B 267 5 2 HELIX 30 AD3 GLN B 268 THR B 280 1 13 HELIX 31 AD4 GLN B 282 LEU B 298 1 17 HELIX 32 AD5 ASP E 2 HIS E 12 1 11 HELIX 33 AD6 HIS E 12 ILE E 20 1 9 HELIX 34 AD7 LYS E 21 GLY E 33 1 13 HELIX 35 AD8 THR E 36 ASN E 45 1 10 HELIX 36 AD9 THR E 48 LYS E 63 1 16 HELIX 37 AE1 ASP E 64 GLU E 78 1 15 HELIX 38 AE2 TYR E 80 ASP E 89 1 10 HELIX 39 AE3 ASP F 202 CSO F 212 1 11 HELIX 40 AE4 CSO F 212 LEU F 220 1 9 HELIX 41 AE5 GLN F 224 ARG F 232 1 9 HELIX 42 AE6 ARG F 236 ARG F 245 1 10 HELIX 43 AE7 SER F 250 LEU F 262 1 13 HELIX 44 AE8 GLU F 263 ARG F 265 5 3 HELIX 45 AE9 GLN F 268 ASP F 279 1 12 HELIX 46 AF1 GLN F 282 LYS F 300 1 19 LINK C ARG D 211 N CSO D 212 1555 1555 1.33 LINK C CSO D 212 N ARG D 213 1555 1555 1.33 LINK C ARG B 211 N CSO B 212 1555 1555 1.33 LINK C CSO B 212 N ARG B 213 1555 1555 1.33 LINK C ARG F 211 N CSO F 212 1555 1555 1.33 LINK C CSO F 212 N ARG F 213 1555 1555 1.33 CISPEP 1 LYS D 300 PRO D 301 0 0.57 CISPEP 2 LYS B 300 PRO B 301 0 1.90 SITE 1 AC1 1 THR C 22 SITE 1 AC2 2 ARG D 290 ARG D 293 SITE 1 AC3 1 ARG D 211 SITE 1 AC4 2 ARG B 290 ARG B 293 SITE 1 AC5 1 THR E 22 SITE 1 AC6 2 SER D 231 ARG F 293 CRYST1 190.110 190.110 68.828 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005260 0.003037 0.000000 0.00000 SCALE2 0.000000 0.006074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014529 0.00000