HEADER RNA BINDING PROTEIN 03-JAN-17 5WWN TITLE CRYSTAL STRUCTURE OF TSR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN TSR1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 80-788; COMPND 5 SYNONYM: 20S RRNA ACCUMULATION PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: TSR1, YDL060W; SOURCE 8 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS RIBOSOME BIOGENESIS PROTEIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YE,B.WANG REVDAT 2 20-MAR-24 5WWN 1 REMARK REVDAT 1 28-JUN-17 5WWN 0 JRNL AUTH Q.SUN,X.ZHU,J.QI,W.AN,P.LAN,D.TAN,R.CHEN,B.WANG,S.ZHENG, JRNL AUTH 2 C.ZHANG,X.CHEN,W.ZHANG,J.CHEN,M.Q.DONG,K.YE JRNL TITL MOLECULAR ARCHITECTURE OF THE 90S SMALL SUBUNIT PRE-RIBOSOME JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28244370 JRNL DOI 10.7554/ELIFE.22086 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4631 - 5.6074 0.99 2866 154 0.2127 0.2387 REMARK 3 2 5.6074 - 4.4522 1.00 2790 120 0.1860 0.2374 REMARK 3 3 4.4522 - 3.8898 1.00 2716 142 0.1971 0.2549 REMARK 3 4 3.8898 - 3.5343 1.00 2725 133 0.2056 0.2728 REMARK 3 5 3.5343 - 3.2811 1.00 2685 154 0.2333 0.3333 REMARK 3 6 3.2811 - 3.0877 1.00 2692 125 0.2390 0.3076 REMARK 3 7 3.0877 - 2.9331 1.00 2714 130 0.2572 0.3387 REMARK 3 8 2.9331 - 2.8054 0.96 2536 170 0.2786 0.3462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4486 REMARK 3 ANGLE : 1.284 6059 REMARK 3 CHIRALITY : 0.052 651 REMARK 3 PLANARITY : 0.006 775 REMARK 3 DIHEDRAL : 19.537 1679 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CHLORIDE, 0.08M BIS-TRIS REMARK 280 PH 5.5, 0.02M BIS-TRIS PH 6.5, 1.6M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.68700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.73150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.17200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.73150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.68700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.17200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 80 REMARK 465 GLY A 81 REMARK 465 GLU A 117 REMARK 465 VAL A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 ILE A 309 REMARK 465 SER A 310 REMARK 465 GLU A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 GLN A 314 REMARK 465 LYS A 315 REMARK 465 ARG A 316 REMARK 465 LYS A 317 REMARK 465 ILE A 318 REMARK 465 ILE A 319 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 LYS A 322 REMARK 465 ALA A 323 REMARK 465 THR A 324 REMARK 465 ASP A 325 REMARK 465 SER A 326 REMARK 465 LEU A 327 REMARK 465 SER A 328 REMARK 465 LEU A 329 REMARK 465 GLU A 330 REMARK 465 LEU A 331 REMARK 465 ASP A 332 REMARK 465 LEU A 333 REMARK 465 GLN A 334 REMARK 465 THR A 335 REMARK 465 VAL A 336 REMARK 465 PHE A 337 REMARK 465 GLU A 338 REMARK 465 SER A 339 REMARK 465 ASN A 340 REMARK 465 MET A 341 REMARK 465 ASN A 342 REMARK 465 ARG A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 GLU A 348 REMARK 465 TYR A 349 REMARK 465 ALA A 350 REMARK 465 PRO A 351 REMARK 465 GLU A 352 REMARK 465 GLY A 353 REMARK 465 THR A 354 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 TRP A 357 REMARK 465 SER A 358 REMARK 465 ASP A 359 REMARK 465 TYR A 360 REMARK 465 ASP A 361 REMARK 465 GLU A 362 REMARK 465 ASP A 363 REMARK 465 PHE A 364 REMARK 465 GLU A 365 REMARK 465 TYR A 366 REMARK 465 ASP A 367 REMARK 465 GLY A 368 REMARK 465 LEU A 369 REMARK 465 THR A 370 REMARK 465 THR A 371 REMARK 465 ALA A 372 REMARK 465 ARG A 373 REMARK 465 TYR A 374 REMARK 465 ASP A 375 REMARK 465 ASP A 376 REMARK 465 HIS A 377 REMARK 465 GLY A 378 REMARK 465 PHE A 379 REMARK 465 LEU A 380 REMARK 465 PRO A 381 REMARK 465 GLY A 382 REMARK 465 ARG A 383 REMARK 465 GLU A 384 REMARK 465 GLN A 385 REMARK 465 THR A 386 REMARK 465 SER A 387 REMARK 465 LYS A 388 REMARK 465 LYS A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 VAL A 392 REMARK 465 PRO A 393 REMARK 465 LYS A 394 REMARK 465 GLY A 395 REMARK 465 THR A 396 REMARK 465 SER A 397 REMARK 465 ASP A 398 REMARK 465 TYR A 399 REMARK 465 GLN A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 TRP A 403 REMARK 465 TYR A 404 REMARK 465 LEU A 405 REMARK 465 ASP A 406 REMARK 465 ASP A 407 REMARK 465 VAL A 408 REMARK 465 ILE A 409 REMARK 465 ASP A 410 REMARK 465 ALA A 411 REMARK 465 ASN A 412 REMARK 465 GLU A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 ALA A 417 REMARK 465 GLU A 418 REMARK 465 GLN A 419 REMARK 465 THR A 420 REMARK 465 ASN A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 GLU A 425 REMARK 465 THR A 426 REMARK 465 MET A 427 REMARK 465 MET A 428 REMARK 465 GLU A 429 REMARK 465 ILE A 430 REMARK 465 ASP A 431 REMARK 465 ASP A 432 REMARK 465 GLU A 433 REMARK 465 MET A 434 REMARK 465 MET A 435 REMARK 465 VAL A 436 REMARK 465 GLU A 437 REMARK 465 GLN A 438 REMARK 465 ASP A 439 REMARK 465 ASN A 440 REMARK 465 GLU A 441 REMARK 465 GLU A 442 REMARK 465 VAL A 443 REMARK 465 ALA A 444 REMARK 465 GLY A 445 REMARK 465 ASP A 446 REMARK 465 GLU A 447 REMARK 465 GLU A 448 REMARK 465 TYR A 449 REMARK 465 ASP A 450 REMARK 465 ILE A 451 REMARK 465 GLU A 452 REMARK 465 ASP A 453 REMARK 465 ASN A 454 REMARK 465 GLU A 455 REMARK 465 GLY A 456 REMARK 465 PHE A 457 REMARK 465 GLU A 458 REMARK 465 GLU A 459 REMARK 465 LEU A 460 REMARK 465 SER A 461 REMARK 465 PRO A 462 REMARK 465 GLU A 463 REMARK 465 GLU A 464 REMARK 465 ASP A 518 REMARK 465 PRO A 519 REMARK 465 SER A 520 REMARK 465 SER A 521 REMARK 465 PRO A 522 REMARK 465 ALA A 523 REMARK 465 GLU A 524 REMARK 465 TRP A 525 REMARK 465 LYS A 526 REMARK 465 SER A 633 REMARK 465 ASN A 634 REMARK 465 SER A 635 REMARK 465 THR A 675 REMARK 465 ASP A 676 REMARK 465 GLY A 787 REMARK 465 MET A 788 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 517 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 497 O4 SO4 A 801 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 109 74.55 -61.52 REMARK 500 ASP A 110 86.62 -153.22 REMARK 500 ARG A 122 -17.99 -152.68 REMARK 500 LYS A 130 -29.86 -177.79 REMARK 500 PHE A 172 -85.18 -113.91 REMARK 500 ALA A 186 -118.81 -89.36 REMARK 500 ASN A 194 -11.35 -140.01 REMARK 500 THR A 269 -14.71 -143.29 REMARK 500 ASN A 290 25.15 -76.09 REMARK 500 ASP A 297 73.96 -102.31 REMARK 500 ASP A 484 64.18 -102.03 REMARK 500 LEU A 504 112.13 -174.50 REMARK 500 ASP A 515 -143.74 -93.57 REMARK 500 GLN A 576 -41.36 -131.14 REMARK 500 HIS A 587 10.52 80.86 REMARK 500 GLN A 611 -4.26 68.77 REMARK 500 ASN A 638 11.94 -64.37 REMARK 500 ASP A 649 48.03 -140.14 REMARK 500 GLN A 664 68.41 -113.08 REMARK 500 SER A 673 82.31 -174.88 REMARK 500 LYS A 678 50.39 -103.88 REMARK 500 ASN A 679 2.65 57.96 REMARK 500 ASN A 690 139.41 -172.68 REMARK 500 ASP A 692 96.00 -165.88 REMARK 500 HIS A 711 60.82 -113.33 REMARK 500 LYS A 712 -86.03 68.13 REMARK 500 ASP A 760 -83.48 -55.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 193 ASN A 194 -145.26 REMARK 500 LEU A 689 ASN A 690 -136.74 REMARK 500 ASN A 690 ALA A 691 148.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 810 DBREF 5WWN A 80 788 UNP Q07381 TSR1_YEAST 80 788 SEQRES 1 A 709 ASN GLY ALA ALA LYS ILE ILE THR ILE VAL PRO LEU VAL SEQRES 2 A 709 ASN ASP LEU ASP PRO LEU ASP ILE LEU TYR LYS LEU LEU SEQRES 3 A 709 LYS CYS ALA ASP ASP GLU GLY ILE MET VAL GLN GLU VAL SEQRES 4 A 709 ASP SER LYS ARG ILE PHE ASN VAL HIS ILE LYS LYS PHE SEQRES 5 A 709 LYS SER ASN LEU LYS ILE ILE ILE PRO ASP MET THR ASN SEQRES 6 A 709 PHE LEU ASN ILE LEU ASP CYS ALA LYS VAL ALA ASP PHE SEQRES 7 A 709 VAL VAL PHE GLY LEU SER GLY VAL GLN GLU VAL ASP GLU SEQRES 8 A 709 GLU PHE GLY GLU GLN ILE ILE ARG ALA LEU GLU LEU GLN SEQRES 9 A 709 GLY ILE ALA SER TYR ILE GLY VAL ILE SER ASN LEU SER SEQRES 10 A 709 ALA VAL HIS GLU LYS GLU LYS PHE GLN LEU ASP VAL LYS SEQRES 11 A 709 GLN SER LEU GLU SER TYR PHE LYS HIS PHE PHE PRO SER SEQRES 12 A 709 GLU GLU ARG VAL TYR ASN LEU GLU LYS ASN SER ASP ALA SEQRES 13 A 709 LEU ASN VAL LEU ARG THR LEU CYS GLN ARG LEU PRO ARG SEQRES 14 A 709 SER ILE ASN TRP ARG ASP ASN ARG GLY TYR VAL VAL ALA SEQRES 15 A 709 ASP PHE VAL ASP PHE VAL GLU THR SER PRO ASP SER GLY SEQRES 16 A 709 ASP LEU VAL ILE GLU GLY THR VAL ARG GLY ILE GLY PHE SEQRES 17 A 709 ASN ALA ASN ARG LEU VAL HIS ILE PRO ASP PHE GLY ASP SEQRES 18 A 709 PHE GLN LEU ASN LYS ILE GLU LYS ILE SER GLU SER SER SEQRES 19 A 709 GLN LYS ARG LYS ILE ILE LYS GLU LYS ALA THR ASP SER SEQRES 20 A 709 LEU SER LEU GLU LEU ASP LEU GLN THR VAL PHE GLU SER SEQRES 21 A 709 ASN MET ASN ARG ASP THR LEU ASP GLU TYR ALA PRO GLU SEQRES 22 A 709 GLY THR GLU ASP TRP SER ASP TYR ASP GLU ASP PHE GLU SEQRES 23 A 709 TYR ASP GLY LEU THR THR ALA ARG TYR ASP ASP HIS GLY SEQRES 24 A 709 PHE LEU PRO GLY ARG GLU GLN THR SER LYS LYS ALA ALA SEQRES 25 A 709 VAL PRO LYS GLY THR SER ASP TYR GLN ALA LYS TRP TYR SEQRES 26 A 709 LEU ASP ASP VAL ILE ASP ALA ASN GLU GLU GLU GLU ALA SEQRES 27 A 709 GLU GLN THR ASN GLY LYS ASP GLU THR MET MET GLU ILE SEQRES 28 A 709 ASP ASP GLU MET MET VAL GLU GLN ASP ASN GLU GLU VAL SEQRES 29 A 709 ALA GLY ASP GLU GLU TYR ASP ILE GLU ASP ASN GLU GLY SEQRES 30 A 709 PHE GLU GLU LEU SER PRO GLU GLU GLU GLU ARG GLN LEU SEQRES 31 A 709 ARG GLU PHE ARG ASP MET GLU LYS GLU ASP ARG GLU PHE SEQRES 32 A 709 PRO ASP GLU ILE GLU LEU GLU PRO SER GLU SER ALA ILE SEQRES 33 A 709 GLU ARG LEU LYS ARG TYR ARG GLY LEU LYS ASN LEU TYR SEQRES 34 A 709 ASN CYS ASP TRP GLN VAL ASP GLU LYS ASP PRO SER SER SEQRES 35 A 709 PRO ALA GLU TRP LYS ARG LEU LEU ARG ILE GLY ASN TYR SEQRES 36 A 709 LYS ASN THR LYS ASN ARG ILE ILE LYS GLU THR LYS ASN SEQRES 37 A 709 GLU ALA GLN ALA ILE ALA GLY ASP ARG ILE ARG MET PHE SEQRES 38 A 709 ILE ARG PHE PRO LYS PHE LEU LEU GLU LYS ILE GLN ASP SEQRES 39 A 709 PRO LYS GLN LEU LEU PHE ALA VAL TYR GLY LEU LEU LEU SEQRES 40 A 709 HIS GLU HIS LYS ASN ALA VAL VAL ASN PHE SER LEU GLN SEQRES 41 A 709 ARG TRP GLU GLN TYR ASP LYS PRO VAL PRO SER GLN GLU SEQRES 42 A 709 PRO ILE VAL VAL GLN TYR GLY VAL ARG ARG TYR THR ILE SEQRES 43 A 709 GLN PRO LEU PHE SER GLN GLY SER ASN SER PRO ASN ASN SEQRES 44 A 709 VAL HIS LYS TYR GLU ARG PHE LEU HIS PRO ASP THR VAL SEQRES 45 A 709 SER VAL ALA THR CYS ILE ALA PRO VAL ASP PHE THR GLN SEQRES 46 A 709 SER PRO ALA ILE PHE PHE LYS PRO SER PRO THR ASP ALA SEQRES 47 A 709 LYS ASN ILE GLU LEU ILE GLY HIS GLY THR PHE LEU ASN SEQRES 48 A 709 ALA ASP HIS SER ARG ILE LEU ALA LYS ARG ALA ILE LEU SEQRES 49 A 709 THR GLY HIS PRO PHE ARG PHE HIS LYS THR VAL VAL THR SEQRES 50 A 709 VAL ARG TYR MET PHE PHE ARG PRO GLU ASP VAL GLU TRP SEQRES 51 A 709 PHE LYS SER ILE PRO LEU PHE THR LYS SER GLY ARG SER SEQRES 52 A 709 GLY PHE ILE LYS GLU SER LEU GLY THR HIS GLY TYR PHE SEQRES 53 A 709 LYS ALA THR PHE ASP GLY LYS LEU SER ALA GLN ASP VAL SEQRES 54 A 709 VAL ALA MET SER LEU TYR LYS ARG MET TRP PRO MET PRO SEQRES 55 A 709 SER LEU PRO TRP ASN GLY MET HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET SO4 A 807 5 HET SO4 A 808 5 HET SO4 A 809 5 HET SO4 A 810 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 10(O4 S 2-) HELIX 1 AA1 ASP A 96 CYS A 107 1 12 HELIX 2 AA2 ASP A 110 VAL A 115 1 6 HELIX 3 AA3 ASN A 144 VAL A 154 1 11 HELIX 4 AA4 PHE A 172 GLN A 183 1 12 HELIX 5 AA5 ASN A 194 VAL A 198 5 5 HELIX 6 AA6 LYS A 201 HIS A 218 1 18 HELIX 7 AA7 LYS A 231 ARG A 245 1 15 HELIX 8 AA8 ILE A 250 ASN A 255 1 6 HELIX 9 AA9 GLU A 466 PHE A 482 1 17 HELIX 10 AB1 SER A 493 LEU A 498 1 6 HELIX 11 AB2 ASN A 506 CYS A 510 5 5 HELIX 12 AB3 ASN A 533 GLU A 548 1 16 HELIX 13 AB4 PHE A 566 LEU A 568 5 3 HELIX 14 AB5 ARG A 723 PHE A 730 1 8 SHEET 1 AA1 6 ILE A 123 HIS A 127 0 SHEET 2 AA1 6 ASN A 134 ILE A 138 -1 O ILE A 137 N PHE A 124 SHEET 3 AA1 6 LYS A 84 PRO A 90 1 N ILE A 86 O ILE A 138 SHEET 4 AA1 6 PHE A 157 LEU A 162 1 O VAL A 159 N VAL A 89 SHEET 5 AA1 6 SER A 187 ILE A 192 1 O ILE A 189 N PHE A 160 SHEET 6 AA1 6 VAL A 226 ASN A 228 1 O TYR A 227 N GLY A 190 SHEET 1 AA2 8 PHE A 263 GLU A 268 0 SHEET 2 AA2 8 SER A 273 GLY A 284 -1 O VAL A 277 N ASP A 265 SHEET 3 AA2 8 ARG A 556 PRO A 564 -1 O ILE A 561 N LEU A 276 SHEET 4 AA2 8 GLY A 299 GLU A 307 -1 N ASN A 304 O PHE A 560 SHEET 5 AA2 8 LEU A 292 ILE A 295 -1 N VAL A 293 O PHE A 301 SHEET 6 AA2 8 ALA A 580 GLY A 583 -1 O TYR A 582 N HIS A 294 SHEET 7 AA2 8 GLY A 257 VAL A 260 -1 N GLY A 257 O GLY A 583 SHEET 8 AA2 8 SER A 273 GLY A 284 -1 O ARG A 283 N TYR A 258 SHEET 1 AA312 ARG A 502 GLY A 503 0 SHEET 2 AA312 VAL A 769 MET A 777 -1 O TYR A 774 N ARG A 502 SHEET 3 AA312 ILE A 696 HIS A 711 -1 N LEU A 697 O MET A 777 SHEET 4 AA312 VAL A 639 GLU A 643 1 N TYR A 642 O ALA A 698 SHEET 5 AA312 LEU A 628 SER A 630 -1 N PHE A 629 O GLU A 643 SHEET 6 AA312 SER A 652 PRO A 659 -1 O VAL A 653 N SER A 630 SHEET 7 AA312 ASN A 591 ARG A 600 -1 N VAL A 594 O CYS A 656 SHEET 8 AA312 ILE A 680 ALA A 691 -1 O ASN A 690 N ASN A 595 SHEET 9 AA312 PRO A 666 PRO A 672 -1 N ALA A 667 O GLY A 686 SHEET 10 AA312 ILE A 614 TYR A 618 -1 N GLN A 617 O ILE A 668 SHEET 11 AA312 ARG A 621 ILE A 625 -1 O TYR A 623 N VAL A 616 SHEET 12 AA312 LEU A 783 PRO A 784 -1 O LEU A 783 N THR A 624 SHEET 1 AA416 ARG A 502 GLY A 503 0 SHEET 2 AA416 VAL A 769 MET A 777 -1 O TYR A 774 N ARG A 502 SHEET 3 AA416 LEU A 735 THR A 737 -1 N PHE A 736 O ALA A 770 SHEET 4 AA416 SER A 742 LEU A 749 -1 O GLY A 743 N LEU A 735 SHEET 5 AA416 TYR A 754 PHE A 759 -1 O LYS A 756 N LYS A 746 SHEET 6 AA416 VAL A 714 ARG A 718 -1 N VAL A 715 O ALA A 757 SHEET 7 AA416 ILE A 696 HIS A 711 -1 N HIS A 711 O VAL A 714 SHEET 8 AA416 VAL A 639 GLU A 643 1 N TYR A 642 O ALA A 698 SHEET 9 AA416 LEU A 628 SER A 630 -1 N PHE A 629 O GLU A 643 SHEET 10 AA416 SER A 652 PRO A 659 -1 O VAL A 653 N SER A 630 SHEET 11 AA416 ASN A 591 ARG A 600 -1 N VAL A 594 O CYS A 656 SHEET 12 AA416 ILE A 680 ALA A 691 -1 O ASN A 690 N ASN A 595 SHEET 13 AA416 PRO A 666 PRO A 672 -1 N ALA A 667 O GLY A 686 SHEET 14 AA416 ILE A 614 TYR A 618 -1 N GLN A 617 O ILE A 668 SHEET 15 AA416 ARG A 621 ILE A 625 -1 O TYR A 623 N VAL A 616 SHEET 16 AA416 LEU A 783 PRO A 784 -1 O LEU A 783 N THR A 624 CISPEP 1 PRO A 296 ASP A 297 0 -12.06 CISPEP 2 PRO A 483 ASP A 484 0 -19.74 SITE 1 AC1 4 ARG A 497 TYR A 501 LYS A 699 LYS A 775 SITE 1 AC2 3 GLY A 750 THR A 751 HIS A 752 SITE 1 AC3 2 ARG A 178 HIS A 218 SITE 1 AC4 4 GLN A 175 TRP A 601 LYS A 678 LEU A 682 SITE 1 AC5 4 GLU A 167 VAL A 168 TYR A 215 GLN A 766 SITE 1 AC6 5 ASN A 638 HIS A 640 ASP A 692 SER A 694 SITE 2 AC6 5 ARG A 695 SITE 1 AC7 3 PRO A 613 THR A 624 PRO A 672 SITE 1 AC8 4 LEU A 504 LYS A 505 ASN A 506 ASN A 509 SITE 1 AC9 3 GLU A 181 LEU A 182 PRO A 666 SITE 1 AD1 4 ARG A 245 LEU A 246 ARG A 502 GLY A 503 CRYST1 65.374 116.344 119.463 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008371 0.00000