HEADER TRANSFERASE/RNA 04-JAN-17 5WWS TITLE CRYSTAL STRUCTURE OF HUMAN NSUN6/TRNA/SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE METHYLTRANSFERASE NSUN6; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: NOL1/NOP2/SUN AND PUA DOMAIN-CONTAINING PROTEIN 1, COMPND 9 NOL1/NOP2/SUN DOMAIN FAMILY MEMBER 6; COMPND 10 EC: 2.1.1.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: NSUN6, NOPD1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 12 PPPARG4; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS RNA MODIFICATION, M5C METHYLTRANSFERASE, NSUN, TRANSFERASE-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.LIU,T.LONG,E.D.WANG REVDAT 4 22-NOV-23 5WWS 1 REMARK REVDAT 3 20-SEP-17 5WWS 1 JRNL REVDAT 2 30-AUG-17 5WWS 1 REMARK REVDAT 1 28-JUN-17 5WWS 0 JRNL AUTH R.J.LIU,T.LONG,J.LI,H.LI,E.D.WANG JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE BINDING AND CATALYTIC JRNL TITL 2 MECHANISM OF A HUMAN RNA:M5C METHYLTRANSFERASE NSUN6 JRNL REF NUCLEIC ACIDS RES. V. 45 6684 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28531330 JRNL DOI 10.1093/NAR/GKX473 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 3 NUMBER OF REFLECTIONS : 32578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7054 - 7.4210 0.99 3118 203 0.1809 0.2014 REMARK 3 2 7.4210 - 5.8952 1.00 3131 176 0.1986 0.2309 REMARK 3 3 5.8952 - 5.1514 1.00 3126 165 0.1845 0.2290 REMARK 3 4 5.1514 - 4.6811 1.00 3129 171 0.1710 0.2136 REMARK 3 5 4.6811 - 4.3459 1.00 3114 167 0.1637 0.1780 REMARK 3 6 4.3459 - 4.0899 1.00 3147 145 0.1748 0.2038 REMARK 3 7 4.0899 - 3.8852 0.97 3011 172 0.2003 0.2535 REMARK 3 8 3.8852 - 3.7162 0.86 2705 138 0.2128 0.2273 REMARK 3 9 3.7162 - 3.5732 0.73 2280 110 0.2224 0.2128 REMARK 3 10 3.5732 - 3.4499 0.58 1788 94 0.2604 0.2854 REMARK 3 11 3.4499 - 3.3421 0.42 1308 63 0.2782 0.3723 REMARK 3 12 3.3421 - 3.2466 0.34 1066 51 0.2677 0.2735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 10691 REMARK 3 ANGLE : 0.783 15151 REMARK 3 CHIRALITY : 0.231 1837 REMARK 3 PLANARITY : 0.003 1413 REMARK 3 DIHEDRAL : 14.118 4457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN B AND SEGID B REMARK 3 ATOM PAIRS NUMBER : 4488 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND SEGID C REMARK 3 SELECTION : CHAIN D AND SEGID D REMARK 3 ATOM PAIRS NUMBER : 1692 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39477 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.247 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WWR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG, 26% (W/V) PEG 1500, 50 MM REMARK 280 NAF, PH 8.8, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.61800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.61800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 85.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G C 1 REMARK 465 G C 34 REMARK 465 C C 35 REMARK 465 G D 1 REMARK 465 U D 33 REMARK 465 G D 34 REMARK 465 C D 35 REMARK 465 MET A 1 REMARK 465 GLU A 304 REMARK 465 ASP A 305 REMARK 465 THR A 306 REMARK 465 GLU A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 THR A 469 REMARK 465 LEU A 470 REMARK 465 GLU A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 MET B 1 REMARK 465 LEU B 300 REMARK 465 ASP B 301 REMARK 465 MET B 302 REMARK 465 VAL B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 THR B 306 REMARK 465 GLU B 307 REMARK 465 LYS B 467 REMARK 465 SER B 468 REMARK 465 THR B 469 REMARK 465 LEU B 470 REMARK 465 GLU B 471 REMARK 465 HIS B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 ARG B 440 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 A D 76 NZ LYS B 192 2.04 REMARK 500 OE2 GLU B 34 NH2 ARG B 37 2.12 REMARK 500 OP2 A C 76 NZ LYS A 192 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C C 72 N1 - C2 - O2 ANGL. DEV. = 4.8 DEGREES REMARK 500 C C 72 C6 - N1 - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 C C 72 C2 - N1 - C1' ANGL. DEV. = 9.3 DEGREES REMARK 500 C D 72 N1 - C2 - O2 ANGL. DEV. = 4.5 DEGREES REMARK 500 C D 72 C6 - N1 - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 C D 72 C2 - N1 - C1' ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 -31.77 -146.30 REMARK 500 LEU A 188 55.32 -148.43 REMARK 500 PHE A 208 54.07 -110.40 REMARK 500 ASP A 209 -76.83 -83.62 REMARK 500 PHE A 217 109.58 -160.74 REMARK 500 THR A 338 49.92 -90.13 REMARK 500 ASN A 380 -99.66 -117.20 REMARK 500 GLU A 441 43.93 -98.15 REMARK 500 LEU B 30 -32.14 -145.69 REMARK 500 LEU B 188 55.40 -148.75 REMARK 500 PHE B 208 53.87 -109.62 REMARK 500 ASP B 209 -76.25 -83.55 REMARK 500 PHE B 217 109.06 -160.61 REMARK 500 THR B 338 49.34 -89.81 REMARK 500 ASN B 380 -99.38 -117.59 REMARK 500 GLU B 441 43.53 -98.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WWQ RELATED DB: PDB REMARK 900 RELATED ID: 5WWR RELATED DB: PDB REMARK 900 RELATED ID: 5WWT RELATED DB: PDB DBREF 5WWS C 1 76 PDB 5WWS 5WWS 1 76 DBREF 5WWS D 1 76 PDB 5WWS 5WWS 1 76 DBREF 5WWS A 1 469 UNP Q8TEA1 NSUN6_HUMAN 1 469 DBREF 5WWS B 1 469 UNP Q8TEA1 NSUN6_HUMAN 1 469 SEQADV 5WWS LEU A 470 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS GLU A 471 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 472 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 473 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 474 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 475 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 476 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS A 477 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS LEU B 470 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS GLU B 471 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 472 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 473 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 474 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 475 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 476 UNP Q8TEA1 EXPRESSION TAG SEQADV 5WWS HIS B 477 UNP Q8TEA1 EXPRESSION TAG SEQRES 1 C 75 G A G G G U A U A G C U C SEQRES 2 C 75 A G G G G U A G A G C A U SEQRES 3 C 75 U U G A C U G C A G A U C SEQRES 4 C 75 A A G A G G U C C C U G G SEQRES 5 C 75 U U C A A A U C C A G G U SEQRES 6 C 75 G C C C U C U C C A SEQRES 1 D 75 G A G G G U A U A G C U C SEQRES 2 D 75 A G G G G U A G A G C A U SEQRES 3 D 75 U U G A C U G C A G A U C SEQRES 4 D 75 A A G A G G U C C C U G G SEQRES 5 D 75 U U C A A A U C C A G G U SEQRES 6 D 75 G C C C U C U C C A SEQRES 1 A 477 MET SER ILE PHE PRO LYS ILE SER LEU ARG PRO GLU VAL SEQRES 2 A 477 GLU ASN TYR LEU LYS GLU GLY PHE MET ASN LYS GLU ILE SEQRES 3 A 477 VAL THR ALA LEU GLY LYS GLN GLU ALA GLU ARG LYS PHE SEQRES 4 A 477 GLU THR LEU LEU LYS HIS LEU SER HIS PRO PRO SER PHE SEQRES 5 A 477 THR THR VAL ARG VAL ASN THR HIS LEU ALA SER VAL GLN SEQRES 6 A 477 HIS VAL LYS ASN LEU LEU LEU ASP GLU LEU GLN LYS GLN SEQRES 7 A 477 PHE ASN GLY LEU SER VAL PRO ILE LEU GLN HIS PRO ASP SEQRES 8 A 477 LEU GLN ASP VAL LEU LEU ILE PRO VAL ILE GLY PRO ARG SEQRES 9 A 477 LYS ASN ILE LYS LYS GLN GLN CYS GLU ALA ILE VAL GLY SEQRES 10 A 477 ALA GLN CYS GLY ASN ALA VAL LEU ARG GLY ALA HIS VAL SEQRES 11 A 477 TYR ALA PRO GLY ILE VAL SER ALA SER GLN PHE MET LYS SEQRES 12 A 477 ALA GLY ASP VAL ILE SER VAL TYR SER ASP ILE LYS GLY SEQRES 13 A 477 LYS CYS LYS LYS GLY ALA LYS GLU PHE ASP GLY THR LYS SEQRES 14 A 477 VAL PHE LEU GLY ASN GLY ILE SER GLU LEU SER ARG LYS SEQRES 15 A 477 GLU ILE PHE SER GLY LEU PRO GLU LEU LYS GLY MET GLY SEQRES 16 A 477 ILE ARG MET THR GLU PRO VAL TYR LEU SER PRO SER PHE SEQRES 17 A 477 ASP SER VAL LEU PRO ARG TYR LEU PHE LEU GLN ASN LEU SEQRES 18 A 477 PRO SER ALA LEU VAL SER HIS VAL LEU ASN PRO GLN PRO SEQRES 19 A 477 GLY GLU LYS ILE LEU ASP LEU CYS ALA ALA PRO GLY GLY SEQRES 20 A 477 LYS THR THR HIS ILE ALA ALA LEU MET HIS ASP GLN GLY SEQRES 21 A 477 GLU VAL ILE ALA LEU ASP LYS ILE PHE ASN LYS VAL GLU SEQRES 22 A 477 LYS ILE LYS GLN ASN ALA LEU LEU LEU GLY LEU ASN SER SEQRES 23 A 477 ILE ARG ALA PHE CYS PHE ASP GLY THR LYS ALA VAL LYS SEQRES 24 A 477 LEU ASP MET VAL GLU ASP THR GLU GLY GLU PRO PRO PHE SEQRES 25 A 477 LEU PRO GLU SER PHE ASP ARG ILE LEU LEU ASP ALA PRO SEQRES 26 A 477 CYS SER GLY MET GLY GLN ARG PRO ASN MET ALA CYS THR SEQRES 27 A 477 TRP SER VAL LYS GLU VAL ALA SER TYR GLN PRO LEU GLN SEQRES 28 A 477 ARG LYS LEU PHE THR ALA ALA VAL GLN LEU LEU LYS PRO SEQRES 29 A 477 GLU GLY VAL LEU VAL TYR SER THR CYS THR ILE THR LEU SEQRES 30 A 477 ALA GLU ASN GLU GLU GLN VAL ALA TRP ALA LEU THR LYS SEQRES 31 A 477 PHE PRO CYS LEU GLN LEU GLN PRO GLN GLU PRO GLN ILE SEQRES 32 A 477 GLY GLY GLU GLY MET ARG GLY ALA GLY LEU SER CYS GLU SEQRES 33 A 477 GLN LEU LYS GLN LEU GLN ARG PHE ASP PRO SER ALA VAL SEQRES 34 A 477 PRO LEU PRO ASP THR ASP MET ASP SER LEU ARG GLU ALA SEQRES 35 A 477 ARG ARG GLU ASP MET LEU ARG LEU ALA ASN LYS ASP SER SEQRES 36 A 477 ILE GLY PHE PHE ILE ALA LYS PHE VAL LYS CYS LYS SER SEQRES 37 A 477 THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 477 MET SER ILE PHE PRO LYS ILE SER LEU ARG PRO GLU VAL SEQRES 2 B 477 GLU ASN TYR LEU LYS GLU GLY PHE MET ASN LYS GLU ILE SEQRES 3 B 477 VAL THR ALA LEU GLY LYS GLN GLU ALA GLU ARG LYS PHE SEQRES 4 B 477 GLU THR LEU LEU LYS HIS LEU SER HIS PRO PRO SER PHE SEQRES 5 B 477 THR THR VAL ARG VAL ASN THR HIS LEU ALA SER VAL GLN SEQRES 6 B 477 HIS VAL LYS ASN LEU LEU LEU ASP GLU LEU GLN LYS GLN SEQRES 7 B 477 PHE ASN GLY LEU SER VAL PRO ILE LEU GLN HIS PRO ASP SEQRES 8 B 477 LEU GLN ASP VAL LEU LEU ILE PRO VAL ILE GLY PRO ARG SEQRES 9 B 477 LYS ASN ILE LYS LYS GLN GLN CYS GLU ALA ILE VAL GLY SEQRES 10 B 477 ALA GLN CYS GLY ASN ALA VAL LEU ARG GLY ALA HIS VAL SEQRES 11 B 477 TYR ALA PRO GLY ILE VAL SER ALA SER GLN PHE MET LYS SEQRES 12 B 477 ALA GLY ASP VAL ILE SER VAL TYR SER ASP ILE LYS GLY SEQRES 13 B 477 LYS CYS LYS LYS GLY ALA LYS GLU PHE ASP GLY THR LYS SEQRES 14 B 477 VAL PHE LEU GLY ASN GLY ILE SER GLU LEU SER ARG LYS SEQRES 15 B 477 GLU ILE PHE SER GLY LEU PRO GLU LEU LYS GLY MET GLY SEQRES 16 B 477 ILE ARG MET THR GLU PRO VAL TYR LEU SER PRO SER PHE SEQRES 17 B 477 ASP SER VAL LEU PRO ARG TYR LEU PHE LEU GLN ASN LEU SEQRES 18 B 477 PRO SER ALA LEU VAL SER HIS VAL LEU ASN PRO GLN PRO SEQRES 19 B 477 GLY GLU LYS ILE LEU ASP LEU CYS ALA ALA PRO GLY GLY SEQRES 20 B 477 LYS THR THR HIS ILE ALA ALA LEU MET HIS ASP GLN GLY SEQRES 21 B 477 GLU VAL ILE ALA LEU ASP LYS ILE PHE ASN LYS VAL GLU SEQRES 22 B 477 LYS ILE LYS GLN ASN ALA LEU LEU LEU GLY LEU ASN SER SEQRES 23 B 477 ILE ARG ALA PHE CYS PHE ASP GLY THR LYS ALA VAL LYS SEQRES 24 B 477 LEU ASP MET VAL GLU ASP THR GLU GLY GLU PRO PRO PHE SEQRES 25 B 477 LEU PRO GLU SER PHE ASP ARG ILE LEU LEU ASP ALA PRO SEQRES 26 B 477 CYS SER GLY MET GLY GLN ARG PRO ASN MET ALA CYS THR SEQRES 27 B 477 TRP SER VAL LYS GLU VAL ALA SER TYR GLN PRO LEU GLN SEQRES 28 B 477 ARG LYS LEU PHE THR ALA ALA VAL GLN LEU LEU LYS PRO SEQRES 29 B 477 GLU GLY VAL LEU VAL TYR SER THR CYS THR ILE THR LEU SEQRES 30 B 477 ALA GLU ASN GLU GLU GLN VAL ALA TRP ALA LEU THR LYS SEQRES 31 B 477 PHE PRO CYS LEU GLN LEU GLN PRO GLN GLU PRO GLN ILE SEQRES 32 B 477 GLY GLY GLU GLY MET ARG GLY ALA GLY LEU SER CYS GLU SEQRES 33 B 477 GLN LEU LYS GLN LEU GLN ARG PHE ASP PRO SER ALA VAL SEQRES 34 B 477 PRO LEU PRO ASP THR ASP MET ASP SER LEU ARG GLU ALA SEQRES 35 B 477 ARG ARG GLU ASP MET LEU ARG LEU ALA ASN LYS ASP SER SEQRES 36 B 477 ILE GLY PHE PHE ILE ALA LYS PHE VAL LYS CYS LYS SER SEQRES 37 B 477 THR LEU GLU HIS HIS HIS HIS HIS HIS HET SAM A 501 27 HET SAM B 501 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 5 SAM 2(C15 H22 N6 O5 S) HELIX 1 AA1 ARG A 10 MET A 22 1 13 HELIX 2 AA2 ASN A 23 GLY A 31 1 9 HELIX 3 AA3 GLY A 31 LEU A 46 1 16 HELIX 4 AA4 SER A 63 PHE A 79 1 17 HELIX 5 AA5 ALA A 118 ARG A 126 1 9 HELIX 6 AA6 SER A 180 SER A 186 1 7 HELIX 7 AA7 ASN A 220 ASN A 231 1 12 HELIX 8 AA8 GLY A 246 MET A 256 1 11 HELIX 9 AA9 ILE A 268 GLY A 283 1 16 HELIX 10 AB1 ASP A 293 ALA A 297 5 5 HELIX 11 AB2 SER A 340 ALA A 345 1 6 HELIX 12 AB3 TYR A 347 LEU A 361 1 15 HELIX 13 AB4 ASN A 380 PHE A 391 1 12 HELIX 14 AB5 SER A 414 LYS A 419 1 6 HELIX 15 AB6 ASP A 435 GLU A 441 1 7 HELIX 16 AB7 ARG A 443 ASP A 454 1 12 HELIX 17 AB8 ARG B 10 MET B 22 1 13 HELIX 18 AB9 ASN B 23 GLY B 31 1 9 HELIX 19 AC1 GLY B 31 LEU B 46 1 16 HELIX 20 AC2 SER B 63 PHE B 79 1 17 HELIX 21 AC3 ALA B 118 ARG B 126 1 9 HELIX 22 AC4 SER B 180 SER B 186 1 7 HELIX 23 AC5 ASN B 220 ASN B 231 1 12 HELIX 24 AC6 GLY B 246 MET B 256 1 11 HELIX 25 AC7 ILE B 268 GLY B 283 1 16 HELIX 26 AC8 ASP B 293 ALA B 297 5 5 HELIX 27 AC9 SER B 340 ALA B 345 1 6 HELIX 28 AD1 TYR B 347 LEU B 361 1 15 HELIX 29 AD2 ASN B 380 PHE B 391 1 12 HELIX 30 AD3 SER B 414 LYS B 419 1 6 HELIX 31 AD4 ASP B 435 GLU B 441 1 7 HELIX 32 AD5 ARG B 443 ASP B 454 1 12 SHEET 1 AA1 2 SER A 8 LEU A 9 0 SHEET 2 AA1 2 ALA A 336 CYS A 337 1 O CYS A 337 N SER A 8 SHEET 1 AA2 4 LEU A 87 GLN A 88 0 SHEET 2 AA2 4 VAL A 95 PRO A 99 -1 O LEU A 97 N LEU A 87 SHEET 3 AA2 4 PHE A 52 VAL A 57 -1 N THR A 53 O ILE A 98 SHEET 4 AA2 4 LEU A 216 LEU A 218 -1 O PHE A 217 N ARG A 56 SHEET 1 AA3 6 VAL A 130 TYR A 131 0 SHEET 2 AA3 6 MET A 194 PRO A 201 -1 O ILE A 196 N VAL A 130 SHEET 3 AA3 6 PHE A 171 SER A 177 -1 N ASN A 174 O GLU A 200 SHEET 4 AA3 6 VAL A 147 ASP A 153 -1 N VAL A 150 O LEU A 172 SHEET 5 AA3 6 GLU A 113 GLY A 117 1 N ALA A 114 O TYR A 151 SHEET 6 AA3 6 ILE A 135 ALA A 138 -1 O SER A 137 N ILE A 115 SHEET 1 AA4 7 ILE A 287 CYS A 291 0 SHEET 2 AA4 7 GLU A 261 ASP A 266 1 N VAL A 262 O ARG A 288 SHEET 3 AA4 7 LYS A 237 ASP A 240 1 N ILE A 238 O ILE A 263 SHEET 4 AA4 7 PHE A 317 LEU A 322 1 O ARG A 319 N LYS A 237 SHEET 5 AA4 7 LEU A 362 THR A 372 1 O SER A 371 N LEU A 322 SHEET 6 AA4 7 PHE A 458 VAL A 464 -1 O PHE A 459 N THR A 372 SHEET 7 AA4 7 GLN A 395 LEU A 396 -1 N GLN A 395 O VAL A 464 SHEET 1 AA5 7 ILE A 287 CYS A 291 0 SHEET 2 AA5 7 GLU A 261 ASP A 266 1 N VAL A 262 O ARG A 288 SHEET 3 AA5 7 LYS A 237 ASP A 240 1 N ILE A 238 O ILE A 263 SHEET 4 AA5 7 PHE A 317 LEU A 322 1 O ARG A 319 N LYS A 237 SHEET 5 AA5 7 LEU A 362 THR A 372 1 O SER A 371 N LEU A 322 SHEET 6 AA5 7 PHE A 458 VAL A 464 -1 O PHE A 459 N THR A 372 SHEET 7 AA5 7 GLN A 422 PHE A 424 -1 N PHE A 424 O PHE A 458 SHEET 1 AA6 2 SER B 8 LEU B 9 0 SHEET 2 AA6 2 ALA B 336 CYS B 337 1 O CYS B 337 N SER B 8 SHEET 1 AA7 4 LEU B 87 GLN B 88 0 SHEET 2 AA7 4 VAL B 95 PRO B 99 -1 O LEU B 97 N LEU B 87 SHEET 3 AA7 4 PHE B 52 VAL B 57 -1 N THR B 53 O ILE B 98 SHEET 4 AA7 4 LEU B 216 LEU B 218 -1 O PHE B 217 N ARG B 56 SHEET 1 AA8 6 VAL B 130 TYR B 131 0 SHEET 2 AA8 6 MET B 194 PRO B 201 -1 O ILE B 196 N VAL B 130 SHEET 3 AA8 6 LYS B 169 SER B 177 -1 N ASN B 174 O GLU B 200 SHEET 4 AA8 6 VAL B 147 ASP B 153 -1 N VAL B 150 O LEU B 172 SHEET 5 AA8 6 GLU B 113 GLY B 117 1 N ALA B 114 O TYR B 151 SHEET 6 AA8 6 ILE B 135 ALA B 138 -1 O SER B 137 N ILE B 115 SHEET 1 AA9 7 ILE B 287 CYS B 291 0 SHEET 2 AA9 7 GLU B 261 ASP B 266 1 N VAL B 262 O ARG B 288 SHEET 3 AA9 7 LYS B 237 ASP B 240 1 N ILE B 238 O ILE B 263 SHEET 4 AA9 7 PHE B 317 LEU B 322 1 O ARG B 319 N LYS B 237 SHEET 5 AA9 7 LEU B 362 THR B 372 1 O SER B 371 N LEU B 322 SHEET 6 AA9 7 PHE B 458 VAL B 464 -1 O PHE B 463 N LEU B 368 SHEET 7 AA9 7 GLN B 395 LEU B 396 -1 N GLN B 395 O VAL B 464 SHEET 1 AB1 7 ILE B 287 CYS B 291 0 SHEET 2 AB1 7 GLU B 261 ASP B 266 1 N VAL B 262 O ARG B 288 SHEET 3 AB1 7 LYS B 237 ASP B 240 1 N ILE B 238 O ILE B 263 SHEET 4 AB1 7 PHE B 317 LEU B 322 1 O ARG B 319 N LYS B 237 SHEET 5 AB1 7 LEU B 362 THR B 372 1 O SER B 371 N LEU B 322 SHEET 6 AB1 7 PHE B 458 VAL B 464 -1 O PHE B 463 N LEU B 368 SHEET 7 AB1 7 GLN B 422 PHE B 424 -1 N PHE B 424 O PHE B 458 CISPEP 1 GLY A 102 PRO A 103 0 -1.58 CISPEP 2 ALA A 244 PRO A 245 0 1.94 CISPEP 3 PRO A 310 PRO A 311 0 -0.35 CISPEP 4 ARG A 332 PRO A 333 0 1.93 CISPEP 5 GLU A 400 PRO A 401 0 0.28 CISPEP 6 GLY B 102 PRO B 103 0 -1.69 CISPEP 7 ALA B 244 PRO B 245 0 2.11 CISPEP 8 PRO B 310 PRO B 311 0 0.60 CISPEP 9 ARG B 332 PRO B 333 0 2.17 CISPEP 10 GLU B 400 PRO B 401 0 0.10 SITE 1 AC1 11 CYS A 242 ALA A 243 ALA A 244 PRO A 245 SITE 2 AC1 11 GLY A 247 LYS A 248 ASP A 266 LYS A 271 SITE 3 AC1 11 GLY A 294 ASP A 323 C C 72 SITE 1 AC2 14 LEU B 241 CYS B 242 ALA B 243 ALA B 244 SITE 2 AC2 14 PRO B 245 GLY B 247 LYS B 248 ASP B 266 SITE 3 AC2 14 LYS B 267 LYS B 271 ASP B 293 GLY B 294 SITE 4 AC2 14 ASP B 323 C D 72 CRYST1 205.236 170.262 76.883 90.00 108.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004872 0.000000 0.001643 0.00000 SCALE2 0.000000 0.005873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013726 0.00000