HEADER DNA BINDING PROTEIN/DNA 06-JAN-17 5WX9 TITLE CRYSTAL STRUCTURE OF ATERF96 WITH GCC-BOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF096; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GCC-BOX MOTIF; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GCC-BOX MOTIF; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ERF096, AT5G43410, MWF20.11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 18 ORGANISM_TAXID: 3702; SOURCE 19 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHEN,Y.S.CHENG REVDAT 3 22-NOV-23 5WX9 1 REMARK REVDAT 2 18-NOV-20 5WX9 1 JRNL REVDAT 1 22-NOV-17 5WX9 0 JRNL AUTH C.Y.CHEN,P.H.LIN,K.H.CHEN,Y.S.CHENG JRNL TITL STRUCTURAL INSIGHTS INTO ARABIDOPSIS ETHYLENE RESPONSE JRNL TITL 2 FACTOR 96 WITH AN EXTENDED N-TERMINAL BINDING TO GCC BOX. JRNL REF PLANT MOL.BIOL. V. 104 483 2020 JRNL REFN ISSN 0167-4412 JRNL PMID 32813232 JRNL DOI 10.1007/S11103-020-01052-5 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 19971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1187 - 4.2411 0.89 1219 130 0.3039 0.3381 REMARK 3 2 4.2411 - 3.3707 0.91 1227 133 0.2765 0.2936 REMARK 3 3 3.3707 - 2.9459 0.95 1247 149 0.2173 0.2591 REMARK 3 4 2.9459 - 2.6772 0.96 1293 146 0.2634 0.2620 REMARK 3 5 2.6772 - 2.4856 0.97 1285 148 0.2426 0.2280 REMARK 3 6 2.4856 - 2.3392 0.99 1304 142 0.2053 0.1815 REMARK 3 7 2.3392 - 2.2222 0.98 1301 143 0.1719 0.1914 REMARK 3 8 2.2222 - 2.1256 0.99 1319 144 0.1466 0.1473 REMARK 3 9 2.1256 - 2.0438 0.99 1246 150 0.1372 0.2320 REMARK 3 10 2.0438 - 1.9734 0.98 1343 146 0.1356 0.1555 REMARK 3 11 1.9734 - 1.9117 0.98 1295 145 0.1253 0.1185 REMARK 3 12 1.9117 - 1.8571 1.00 1327 142 0.1062 0.1279 REMARK 3 13 1.8571 - 1.8082 0.98 1322 149 0.1094 0.1408 REMARK 3 14 1.8082 - 1.7641 0.96 1238 138 0.1148 0.1415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1525 REMARK 3 ANGLE : 1.773 2139 REMARK 3 CHIRALITY : 0.078 219 REMARK 3 PLANARITY : 0.043 207 REMARK 3 DIHEDRAL : 27.295 596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MAGNESIUM CHLORIDE HEXAHYDRATE REMARK 280 &, 0.05M MOPS PH 7.0 &, 55% TACSIMATE PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.59050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 92 O HOH A 201 1.73 REMARK 500 O HOH A 322 O HOH A 339 1.78 REMARK 500 N GLY A 17 OP2 DG C 16 1.83 REMARK 500 N6 DA B 2 O HOH B 101 1.84 REMARK 500 OD2 ASP A 32 O HOH A 202 1.88 REMARK 500 OP2 DC B 8 O HOH B 102 1.91 REMARK 500 O GLU A 29 OH TYR A 55 1.93 REMARK 500 OD1 ASP A 112 O HOH A 203 1.93 REMARK 500 O HOH A 308 O HOH A 309 1.94 REMARK 500 NH2 ARG A 6 O HOH A 204 1.94 REMARK 500 O HOH A 232 O HOH A 318 1.96 REMARK 500 OG SER A 83 O HOH A 205 1.96 REMARK 500 N3 DG B 10 O HOH B 103 1.96 REMARK 500 O HOH A 244 O HOH A 247 1.98 REMARK 500 NE ARG A 19 O HOH A 206 1.98 REMARK 500 N GLY A 4 O HOH A 207 1.99 REMARK 500 O2 DC B 5 N2 DG C 18 1.99 REMARK 500 NH1 ARG A 19 O HOH A 206 1.99 REMARK 500 NH1 ARG A 16 OP1 DG C 15 2.00 REMARK 500 O ARG A 31 O HOH A 208 2.01 REMARK 500 O HOH A 418 O HOH A 424 2.01 REMARK 500 O HOH B 132 O HOH B 133 2.01 REMARK 500 O HOH A 334 O HOH A 357 2.01 REMARK 500 O HOH A 271 O HOH A 283 2.01 REMARK 500 CZ ARG A 19 O HOH A 206 2.02 REMARK 500 O HOH A 405 O HOH A 416 2.03 REMARK 500 O HOH A 413 O HOH A 436 2.03 REMARK 500 O HOH A 272 O HOH B 149 2.04 REMARK 500 O HOH B 102 O HOH B 118 2.04 REMARK 500 O HOH A 371 O HOH A 426 2.06 REMARK 500 O2 DC B 8 O HOH B 104 2.07 REMARK 500 O HOH B 127 O HOH B 134 2.08 REMARK 500 NH1 ARG A 19 O6 DG C 18 2.08 REMARK 500 OP1 DC B 7 O HOH B 105 2.08 REMARK 500 O5' DT B 1 O HOH B 106 2.08 REMARK 500 O GLN A 65 O HOH A 209 2.08 REMARK 500 N ARG A 16 O HOH A 210 2.08 REMARK 500 O HOH A 297 O HOH A 370 2.08 REMARK 500 O HOH A 211 O HOH A 293 2.08 REMARK 500 O3' DC C 17 O HOH C 101 2.09 REMARK 500 OE1 GLN A 3 N2 DG B 10 2.09 REMARK 500 OE1 GLU A 120 O HOH A 211 2.09 REMARK 500 O HOH A 259 O HOH A 319 2.10 REMARK 500 O VAL A 8 O HOH A 212 2.10 REMARK 500 O HOH A 210 O HOH A 311 2.10 REMARK 500 O GLY A 89 O HOH A 201 2.11 REMARK 500 NH1 ARG A 34 O HOH A 213 2.11 REMARK 500 O HOH A 437 O HOH A 439 2.11 REMARK 500 O ALA A 86 O HOH A 214 2.11 REMARK 500 O GLU A 116 O HOH A 215 2.11 REMARK 500 REMARK 500 THIS ENTRY HAS 83 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 413 O HOH C 126 1655 1.93 REMARK 500 O HOH A 228 O HOH B 105 2746 1.95 REMARK 500 O HOH A 429 O HOH A 440 1556 2.03 REMARK 500 O HOH A 420 O HOH A 441 2755 2.11 REMARK 500 O HOH A 305 O HOH C 120 1655 2.14 REMARK 500 O HOH A 312 O HOH C 106 1554 2.16 REMARK 500 O HOH A 421 O HOH A 440 1556 2.19 REMARK 500 O HOH A 247 O HOH A 325 1554 2.19 REMARK 500 O HOH A 286 O HOH C 118 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 15 O3' DG C 15 C3' -0.044 REMARK 500 DG C 18 O3' DG C 18 C3' -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC C 17 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 71 161.78 58.36 REMARK 500 VAL A 81 -40.70 54.43 REMARK 500 GLN A 103 169.78 97.58 REMARK 500 VAL A 104 -39.75 42.07 REMARK 500 SER A 113 -91.83 -135.09 REMARK 500 VAL A 114 -42.25 -171.15 REMARK 500 GLU A 120 54.65 29.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.26 SIDE CHAIN REMARK 500 ARG A 19 0.23 SIDE CHAIN REMARK 500 ARG A 21 0.29 SIDE CHAIN REMARK 500 ARG A 31 0.27 SIDE CHAIN REMARK 500 ARG A 39 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 430 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 432 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 433 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 436 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 437 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 438 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 439 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 441 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 442 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 443 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 444 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 445 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 446 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 447 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 449 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A 450 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 451 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH A 452 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 156 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 157 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 158 DISTANCE = 7.65 ANGSTROMS DBREF 5WX9 A 1 131 UNP Q9LSX0 ERF96_ARATH 1 131 DBREF 5WX9 B 1 11 PDB 5WX9 5WX9 1 11 DBREF 5WX9 C 12 22 PDB 5WX9 5WX9 12 22 SEQRES 1 A 131 MET ASP GLN GLY GLY ARG GLY VAL GLY ALA GLU HIS GLY SEQRES 2 A 131 LYS TYR ARG GLY VAL ARG ARG ARG PRO TRP GLY LYS TYR SEQRES 3 A 131 ALA ALA GLU ILE ARG ASP SER ARG LYS HIS GLY GLU ARG SEQRES 4 A 131 VAL TRP LEU GLY THR PHE ASP THR ALA GLU GLU ALA ALA SEQRES 5 A 131 ARG ALA TYR ASP GLN ALA ALA TYR SER MET ARG GLY GLN SEQRES 6 A 131 ALA ALA ILE LEU ASN PHE PRO HIS GLU TYR ASN MET GLY SEQRES 7 A 131 SER GLY VAL SER SER SER THR ALA MET ALA GLY SER SER SEQRES 8 A 131 SER ALA SER ALA SER ALA SER SER SER SER ARG GLN VAL SEQRES 9 A 131 PHE GLU PHE GLU TYR LEU ASP ASP SER VAL LEU GLU GLU SEQRES 10 A 131 LEU LEU GLU GLU GLY GLU LYS PRO ASN LYS GLY LYS LYS SEQRES 11 A 131 LYS SEQRES 1 B 11 DT DA DG DC DC DG DC DC DA DG DC SEQRES 1 C 11 DG DC DT DG DG DC DG DG DC DT DA FORMUL 4 HOH *338(H2 O) HELIX 1 AA1 MET A 1 ALA A 10 1 10 HELIX 2 AA2 GLU A 50 GLY A 64 1 15 HELIX 3 AA3 SER A 83 SER A 92 1 10 HELIX 4 AA4 SER A 99 GLN A 103 5 5 HELIX 5 AA5 VAL A 104 ASP A 112 1 9 SHEET 1 AA1 2 TYR A 26 ARG A 31 0 SHEET 2 AA1 2 ARG A 39 PHE A 45 -1 O VAL A 40 N ILE A 30 CISPEP 1 GLY A 78 SER A 79 0 0.98 CISPEP 2 GLY A 80 VAL A 81 0 10.76 CISPEP 3 SER A 92 ALA A 93 0 5.53 CISPEP 4 ASP A 112 SER A 113 0 1.44 CISPEP 5 PRO A 125 ASN A 126 0 10.27 CISPEP 6 GLY A 128 LYS A 129 0 -8.26 CRYST1 38.976 81.181 38.999 90.00 120.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025657 0.000000 0.014836 0.00000 SCALE2 0.000000 0.012318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029620 0.00000 MASTER 409 0 0 5 2 0 0 6 1791 3 0 13 END