data_5WYE # _entry.id 5WYE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5WYE pdb_00005wye 10.2210/pdb5wye/pdb WWPDB D_1300002580 ? ? BMRB 36044 ? 10.13018/BMR36044 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-15 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_database_status 4 2 'Structure model' pdbx_nmr_software 5 2 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 2 'Structure model' '_pdbx_nmr_software.name' 6 2 'Structure model' '_pdbx_nmr_spectrometer.model' 7 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5WYE _pdbx_database_status.recvd_initial_deposition_date 2017-01-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of gold nano particle-tagged VG16KRKP in Salmonella typhi LPS' _pdbx_database_related.db_id 36044 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ilyas, H.' 1 ? 'Bhunia, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nanoscale _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2040-3372 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 14074 _citation.page_last 14093 _citation.title 'Multivalent gold nanoparticle-peptide conjugates for targeting intracellular bacterial infections' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c7nr04062h _citation.pdbx_database_id_PubMed 28901372 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chowdhury, R.' 1 ? primary 'Ilyas, H.' 2 ? primary 'Ghosh, A.' 3 ? primary 'Ali, H.' 4 ? primary 'Ghorai, A.' 5 ? primary 'Midya, A.' 6 ? primary 'Jana, N.R.' 7 ? primary 'Das, S.' 8 ? primary 'Bhunia, A.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Au-VG16KRKP _entity.formula_weight 1765.157 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VARGWKRKCPLFGKGG _entity_poly.pdbx_seq_one_letter_code_can VARGWKRKCPLFGKGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ALA n 1 3 ARG n 1 4 GLY n 1 5 TRP n 1 6 LYS n 1 7 ARG n 1 8 LYS n 1 9 CYS n 1 10 PRO n 1 11 LEU n 1 12 PHE n 1 13 GLY n 1 14 LYS n 1 15 GLY n 1 16 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Dengue virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 12637 _pdbx_entity_src_syn.details 'This sequence was chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5WYE _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5WYE _struct.title 'Structure of gold nano particle-tagged VG16KRKP in Salmonella typhi LPS' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5WYE _struct_keywords.text 'ANTIMICROBIAL PEPTIDE, GOLD NANOPARTICLE TAGGED, TURN AND LOOP TYPE STRUCTURE, AMPHIPATHIC STRUCTURE, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5WYE _struct_ref.pdbx_db_accession 5WYE _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5WYE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5WYE _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1730 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 5 ? ? -121.94 -80.85 2 1 LYS A 6 ? ? -28.59 -56.30 3 1 ARG A 7 ? ? -77.98 -75.10 4 1 CYS A 9 ? ? -118.63 74.20 5 1 LEU A 11 ? ? -115.94 -78.04 6 2 TRP A 5 ? ? -121.81 -80.46 7 2 LYS A 6 ? ? -28.70 -55.72 8 2 ARG A 7 ? ? -79.30 -75.41 9 2 CYS A 9 ? ? -116.93 73.16 10 2 LEU A 11 ? ? -115.82 -78.30 11 3 TRP A 5 ? ? -122.44 -80.41 12 3 LYS A 6 ? ? -28.55 -56.57 13 3 ARG A 7 ? ? -79.02 -75.58 14 3 CYS A 9 ? ? -113.77 73.62 15 3 LEU A 11 ? ? -116.57 -78.33 16 4 TRP A 5 ? ? -123.08 -81.70 17 4 ARG A 7 ? ? -76.45 -78.36 18 4 CYS A 9 ? ? -116.35 77.46 19 4 LEU A 11 ? ? -115.82 -78.80 20 5 TRP A 5 ? ? -121.59 -79.89 21 5 ARG A 7 ? ? -83.52 -75.76 22 5 CYS A 9 ? ? -115.75 74.12 23 5 LEU A 11 ? ? -120.09 -78.12 24 6 TRP A 5 ? ? -122.34 -80.25 25 6 LYS A 6 ? ? -29.77 -52.00 26 6 ARG A 7 ? ? -82.54 -74.40 27 6 CYS A 9 ? ? -115.54 73.78 28 6 LEU A 11 ? ? -119.91 -78.16 29 7 TRP A 5 ? ? -121.60 -80.69 30 7 LYS A 6 ? ? -28.42 -56.70 31 7 ARG A 7 ? ? -79.26 -75.16 32 7 CYS A 9 ? ? -117.16 74.66 33 7 LEU A 11 ? ? -120.03 -78.06 34 8 TRP A 5 ? ? -122.39 -80.31 35 8 LYS A 6 ? ? -29.26 -53.36 36 8 ARG A 7 ? ? -82.04 -74.54 37 8 CYS A 9 ? ? -115.78 74.12 38 8 LEU A 11 ? ? -120.08 -78.32 39 9 TRP A 5 ? ? -122.29 -81.68 40 9 LYS A 6 ? ? -29.34 -55.22 41 9 ARG A 7 ? ? -73.02 -79.31 42 9 CYS A 9 ? ? -117.14 76.70 43 9 LEU A 11 ? ? -114.13 -78.31 44 10 TRP A 5 ? ? -121.83 -80.62 45 10 LYS A 6 ? ? -28.60 -57.79 46 10 ARG A 7 ? ? -76.79 -75.14 47 10 CYS A 9 ? ? -119.49 74.43 48 10 LEU A 11 ? ? -115.47 -77.86 49 11 TRP A 5 ? ? -121.67 -80.31 50 11 LYS A 6 ? ? -29.92 -50.80 51 11 ARG A 7 ? ? -84.28 -73.89 52 11 CYS A 9 ? ? -114.18 72.87 53 11 LEU A 11 ? ? -118.36 -77.93 54 11 LYS A 14 ? ? -49.96 -83.36 55 12 TRP A 5 ? ? -122.78 -78.37 56 12 LYS A 6 ? ? -27.39 -75.92 57 12 CYS A 9 ? ? -113.08 72.31 58 12 LEU A 11 ? ? -114.67 -78.46 59 13 TRP A 5 ? ? -121.97 -80.10 60 13 LYS A 6 ? ? -29.90 -50.87 61 13 LEU A 11 ? ? -111.79 -78.48 62 14 TRP A 5 ? ? -122.75 -78.36 63 14 LYS A 6 ? ? -27.19 -75.87 64 14 CYS A 9 ? ? -113.12 72.24 65 14 LEU A 11 ? ? -114.98 -78.29 66 14 LYS A 14 ? ? -47.58 -83.02 67 15 TRP A 5 ? ? -122.44 -79.45 68 15 ARG A 7 ? ? -82.85 -75.22 69 15 CYS A 9 ? ? -115.06 73.64 70 15 LEU A 11 ? ? -119.71 -77.52 71 16 TRP A 5 ? ? -123.66 -78.90 72 16 LYS A 6 ? ? -29.79 -50.85 73 16 ARG A 7 ? ? -86.66 -75.18 74 16 CYS A 9 ? ? -113.86 72.69 75 16 LEU A 11 ? ? -116.14 -78.31 76 17 ALA A 2 ? ? -125.79 -125.45 77 17 ARG A 3 ? ? -122.98 -71.42 78 17 TRP A 5 ? ? -115.36 -79.08 79 17 LYS A 6 ? ? -29.25 -50.55 80 17 LEU A 11 ? ? -111.90 -79.45 81 18 ARG A 3 ? ? -29.83 -54.92 82 18 TRP A 5 ? ? -117.48 -80.54 83 18 ARG A 7 ? ? -81.41 -75.07 84 18 CYS A 9 ? ? -117.91 72.52 85 18 LEU A 11 ? ? -114.32 -78.10 86 19 ARG A 3 ? ? -26.95 -61.09 87 19 TRP A 5 ? ? -121.94 -76.76 88 19 LYS A 6 ? ? -26.50 -70.20 89 19 CYS A 9 ? ? -115.69 70.62 90 19 LEU A 11 ? ? -120.23 -77.62 91 20 TRP A 5 ? ? -124.42 -80.63 92 20 LYS A 6 ? ? -29.11 -74.23 93 20 CYS A 9 ? ? -115.18 67.67 94 20 LEU A 11 ? ? -120.36 -81.25 # _pdbx_nmr_ensemble.entry_id 5WYE _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5WYE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM None Au-VG16KRKP, 15 uM None LPS from S. typhosa, 55.5 M None H2O, 50 M None D2O, 1 mM None TSP, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label Au-VG16KRKP_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Au-VG16KRKP 0.5 ? mM None 1 'LPS from S. typhosa' 15 ? uM None 1 H2O 55.5 ? M None 1 D2O 50 ? M None 1 TSP 1 ? mM None # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.15 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.00 _pdbx_nmr_exptl_sample_conditions.details 'The sample was prepared at 298.15 K and the pH was adjusted to 6.5. No heating effect occurred.' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.00 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label Au-VG16KRKP_conditions _pdbx_nmr_exptl_sample_conditions.pH_err 0.00 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.00 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.00 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 5WYE _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA ? 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 GLY N N N N 55 GLY CA C N N 56 GLY C C N N 57 GLY O O N N 58 GLY OXT O N N 59 GLY H H N N 60 GLY H2 H N N 61 GLY HA2 H N N 62 GLY HA3 H N N 63 GLY HXT H N N 64 LEU N N N N 65 LEU CA C N S 66 LEU C C N N 67 LEU O O N N 68 LEU CB C N N 69 LEU CG C N N 70 LEU CD1 C N N 71 LEU CD2 C N N 72 LEU OXT O N N 73 LEU H H N N 74 LEU H2 H N N 75 LEU HA H N N 76 LEU HB2 H N N 77 LEU HB3 H N N 78 LEU HG H N N 79 LEU HD11 H N N 80 LEU HD12 H N N 81 LEU HD13 H N N 82 LEU HD21 H N N 83 LEU HD22 H N N 84 LEU HD23 H N N 85 LEU HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 PHE N N N N 112 PHE CA C N S 113 PHE C C N N 114 PHE O O N N 115 PHE CB C N N 116 PHE CG C Y N 117 PHE CD1 C Y N 118 PHE CD2 C Y N 119 PHE CE1 C Y N 120 PHE CE2 C Y N 121 PHE CZ C Y N 122 PHE OXT O N N 123 PHE H H N N 124 PHE H2 H N N 125 PHE HA H N N 126 PHE HB2 H N N 127 PHE HB3 H N N 128 PHE HD1 H N N 129 PHE HD2 H N N 130 PHE HE1 H N N 131 PHE HE2 H N N 132 PHE HZ H N N 133 PHE HXT H N N 134 PRO N N N N 135 PRO CA C N S 136 PRO C C N N 137 PRO O O N N 138 PRO CB C N N 139 PRO CG C N N 140 PRO CD C N N 141 PRO OXT O N N 142 PRO H H N N 143 PRO HA H N N 144 PRO HB2 H N N 145 PRO HB3 H N N 146 PRO HG2 H N N 147 PRO HG3 H N N 148 PRO HD2 H N N 149 PRO HD3 H N N 150 PRO HXT H N N 151 TRP N N N N 152 TRP CA C N S 153 TRP C C N N 154 TRP O O N N 155 TRP CB C N N 156 TRP CG C Y N 157 TRP CD1 C Y N 158 TRP CD2 C Y N 159 TRP NE1 N Y N 160 TRP CE2 C Y N 161 TRP CE3 C Y N 162 TRP CZ2 C Y N 163 TRP CZ3 C Y N 164 TRP CH2 C Y N 165 TRP OXT O N N 166 TRP H H N N 167 TRP H2 H N N 168 TRP HA H N N 169 TRP HB2 H N N 170 TRP HB3 H N N 171 TRP HD1 H N N 172 TRP HE1 H N N 173 TRP HE3 H N N 174 TRP HZ2 H N N 175 TRP HZ3 H N N 176 TRP HH2 H N N 177 TRP HXT H N N 178 VAL N N N N 179 VAL CA C N S 180 VAL C C N N 181 VAL O O N N 182 VAL CB C N N 183 VAL CG1 C N N 184 VAL CG2 C N N 185 VAL OXT O N N 186 VAL H H N N 187 VAL H2 H N N 188 VAL HA H N N 189 VAL HB H N N 190 VAL HG11 H N N 191 VAL HG12 H N N 192 VAL HG13 H N N 193 VAL HG21 H N N 194 VAL HG22 H N N 195 VAL HG23 H N N 196 VAL HXT H N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLY N CA sing N N 52 GLY N H sing N N 53 GLY N H2 sing N N 54 GLY CA C sing N N 55 GLY CA HA2 sing N N 56 GLY CA HA3 sing N N 57 GLY C O doub N N 58 GLY C OXT sing N N 59 GLY OXT HXT sing N N 60 LEU N CA sing N N 61 LEU N H sing N N 62 LEU N H2 sing N N 63 LEU CA C sing N N 64 LEU CA CB sing N N 65 LEU CA HA sing N N 66 LEU C O doub N N 67 LEU C OXT sing N N 68 LEU CB CG sing N N 69 LEU CB HB2 sing N N 70 LEU CB HB3 sing N N 71 LEU CG CD1 sing N N 72 LEU CG CD2 sing N N 73 LEU CG HG sing N N 74 LEU CD1 HD11 sing N N 75 LEU CD1 HD12 sing N N 76 LEU CD1 HD13 sing N N 77 LEU CD2 HD21 sing N N 78 LEU CD2 HD22 sing N N 79 LEU CD2 HD23 sing N N 80 LEU OXT HXT sing N N 81 LYS N CA sing N N 82 LYS N H sing N N 83 LYS N H2 sing N N 84 LYS CA C sing N N 85 LYS CA CB sing N N 86 LYS CA HA sing N N 87 LYS C O doub N N 88 LYS C OXT sing N N 89 LYS CB CG sing N N 90 LYS CB HB2 sing N N 91 LYS CB HB3 sing N N 92 LYS CG CD sing N N 93 LYS CG HG2 sing N N 94 LYS CG HG3 sing N N 95 LYS CD CE sing N N 96 LYS CD HD2 sing N N 97 LYS CD HD3 sing N N 98 LYS CE NZ sing N N 99 LYS CE HE2 sing N N 100 LYS CE HE3 sing N N 101 LYS NZ HZ1 sing N N 102 LYS NZ HZ2 sing N N 103 LYS NZ HZ3 sing N N 104 LYS OXT HXT sing N N 105 PHE N CA sing N N 106 PHE N H sing N N 107 PHE N H2 sing N N 108 PHE CA C sing N N 109 PHE CA CB sing N N 110 PHE CA HA sing N N 111 PHE C O doub N N 112 PHE C OXT sing N N 113 PHE CB CG sing N N 114 PHE CB HB2 sing N N 115 PHE CB HB3 sing N N 116 PHE CG CD1 doub Y N 117 PHE CG CD2 sing Y N 118 PHE CD1 CE1 sing Y N 119 PHE CD1 HD1 sing N N 120 PHE CD2 CE2 doub Y N 121 PHE CD2 HD2 sing N N 122 PHE CE1 CZ doub Y N 123 PHE CE1 HE1 sing N N 124 PHE CE2 CZ sing Y N 125 PHE CE2 HE2 sing N N 126 PHE CZ HZ sing N N 127 PHE OXT HXT sing N N 128 PRO N CA sing N N 129 PRO N CD sing N N 130 PRO N H sing N N 131 PRO CA C sing N N 132 PRO CA CB sing N N 133 PRO CA HA sing N N 134 PRO C O doub N N 135 PRO C OXT sing N N 136 PRO CB CG sing N N 137 PRO CB HB2 sing N N 138 PRO CB HB3 sing N N 139 PRO CG CD sing N N 140 PRO CG HG2 sing N N 141 PRO CG HG3 sing N N 142 PRO CD HD2 sing N N 143 PRO CD HD3 sing N N 144 PRO OXT HXT sing N N 145 TRP N CA sing N N 146 TRP N H sing N N 147 TRP N H2 sing N N 148 TRP CA C sing N N 149 TRP CA CB sing N N 150 TRP CA HA sing N N 151 TRP C O doub N N 152 TRP C OXT sing N N 153 TRP CB CG sing N N 154 TRP CB HB2 sing N N 155 TRP CB HB3 sing N N 156 TRP CG CD1 doub Y N 157 TRP CG CD2 sing Y N 158 TRP CD1 NE1 sing Y N 159 TRP CD1 HD1 sing N N 160 TRP CD2 CE2 doub Y N 161 TRP CD2 CE3 sing Y N 162 TRP NE1 CE2 sing Y N 163 TRP NE1 HE1 sing N N 164 TRP CE2 CZ2 sing Y N 165 TRP CE3 CZ3 doub Y N 166 TRP CE3 HE3 sing N N 167 TRP CZ2 CH2 doub Y N 168 TRP CZ2 HZ2 sing N N 169 TRP CZ3 CH2 sing Y N 170 TRP CZ3 HZ3 sing N N 171 TRP CH2 HH2 sing N N 172 TRP OXT HXT sing N N 173 VAL N CA sing N N 174 VAL N H sing N N 175 VAL N H2 sing N N 176 VAL CA C sing N N 177 VAL CA CB sing N N 178 VAL CA HA sing N N 179 VAL C O doub N N 180 VAL C OXT sing N N 181 VAL CB CG1 sing N N 182 VAL CB CG2 sing N N 183 VAL CB HB sing N N 184 VAL CG1 HG11 sing N N 185 VAL CG1 HG12 sing N N 186 VAL CG1 HG13 sing N N 187 VAL CG2 HG21 sing N N 188 VAL CG2 HG22 sing N N 189 VAL CG2 HG23 sing N N 190 VAL OXT HXT sing N N 191 # _pdbx_audit_support.funding_organization 'Bose Institute' _pdbx_audit_support.country India _pdbx_audit_support.grant_number 'Institutional Plan Project II' _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details 'with cryoprobe' # _atom_sites.entry_id 5WYE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_