HEADER CHAPERONE 14-JAN-17 5WYO TITLE SOLUTION STRUCTURE OF E.COLI HDEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID STRESS CHAPERONE HDEA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 GENE: HDEA, Z4922, ECS4390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR KEYWDS PERIPLASMIC PROTEIN, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.YANG,Y.HU,C.JIN REVDAT 2 14-JUN-23 5WYO 1 REMARK REVDAT 1 22-NOV-17 5WYO 0 JRNL AUTH X.C.YU,C.YANG,J.DING,X.NIU,Y.HU,C.JIN JRNL TITL CHARACTERIZATIONS OF THE INTERACTIONS BETWEEN ESCHERICHIA JRNL TITL 2 COLI PERIPLASMIC CHAPERONE HDEA AND ITS NATIVE SUBSTRATES JRNL TITL 3 DURING ACID STRESS JRNL REF BIOCHEMISTRY V. 56 5748 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29016106 JRNL DOI 10.1021/ACS.BIOCHEM.7B00724 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002610. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 180 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-99% 13C; U-99% 15N] REMARK 210 HDEA, 20 MM SODIUM CITRATE, 20 REMARK 210 MM SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 13C/15N- REMARK 210 FILTERED 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 5 -69.07 56.46 REMARK 500 1 ALA A 6 -56.84 -153.04 REMARK 500 1 VAL A 13 2.24 -64.33 REMARK 500 1 SER A 15 -13.22 -142.55 REMARK 500 1 LEU A 50 155.00 64.49 REMARK 500 1 ASP A 51 62.22 -119.11 REMARK 500 1 PRO A 60 0.85 -68.48 REMARK 500 1 LYS A 75 -32.15 60.44 REMARK 500 1 LYS B 94 48.94 37.51 REMARK 500 1 ASN B 98 15.53 51.98 REMARK 500 1 LYS B 99 105.42 56.40 REMARK 500 1 SER B 104 -40.52 -142.05 REMARK 500 1 ALA B 125 -70.98 -96.72 REMARK 500 1 LYS B 131 -130.08 -150.66 REMARK 500 1 ASP B 132 -54.12 -157.07 REMARK 500 1 LEU B 139 144.36 60.47 REMARK 500 1 ASP B 140 44.44 -87.93 REMARK 500 1 LYS B 175 -61.82 -101.47 REMARK 500 2 ALA A 6 -115.40 45.35 REMARK 500 2 ASN A 9 -5.56 -147.57 REMARK 500 2 LYS A 42 -129.52 -141.41 REMARK 500 2 ASP A 43 -50.80 -161.87 REMARK 500 2 LEU A 50 112.13 62.78 REMARK 500 2 ASP A 51 54.07 -90.90 REMARK 500 2 PRO A 60 1.24 -69.40 REMARK 500 2 ASP A 88 15.30 54.57 REMARK 500 2 ASP B 97 -29.78 59.86 REMARK 500 2 PHE B 124 -57.57 -126.39 REMARK 500 2 LYS B 131 -122.97 -146.11 REMARK 500 2 ASP B 132 -79.31 -160.30 REMARK 500 3 LYS A 5 37.54 -77.48 REMARK 500 3 LYS A 10 92.69 40.24 REMARK 500 3 LYS A 11 60.71 -115.90 REMARK 500 3 VAL A 13 7.76 -63.50 REMARK 500 3 LYS A 42 -120.15 -156.13 REMARK 500 3 ASP A 43 -58.88 -161.18 REMARK 500 3 LEU A 50 110.01 66.64 REMARK 500 3 ASP A 51 59.83 -96.39 REMARK 500 3 PHE A 74 153.09 -48.28 REMARK 500 3 LYS A 75 -34.63 60.29 REMARK 500 3 ALA B 92 159.95 63.75 REMARK 500 3 GLN B 93 -154.21 -155.39 REMARK 500 3 LYS B 94 42.69 -73.99 REMARK 500 3 ALA B 95 90.60 58.35 REMARK 500 3 ALA B 96 -154.65 52.84 REMARK 500 3 ASN B 98 13.53 -149.76 REMARK 500 3 LYS B 131 -124.14 -154.16 REMARK 500 3 ASP B 132 -45.68 -163.66 REMARK 500 3 ASP B 140 48.98 -87.07 REMARK 500 4 ALA A 7 -81.96 56.97 REMARK 500 REMARK 500 THIS ENTRY HAS 281 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36045 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF E.COLI HDEA DBREF 5WYO A 1 89 UNP P0AET0 HDEA_ECO57 22 110 DBREF 5WYO B 90 178 UNP P0AET0 HDEA_ECO57 22 110 SEQRES 1 A 89 ALA ASP ALA GLN LYS ALA ALA ASP ASN LYS LYS PRO VAL SEQRES 2 A 89 ASN SER TRP THR CYS GLU ASP PHE LEU ALA VAL ASP GLU SEQRES 3 A 89 SER PHE GLN PRO THR ALA VAL GLY PHE ALA GLU ALA LEU SEQRES 4 A 89 ASN ASN LYS ASP LYS PRO GLU ASP ALA VAL LEU ASP VAL SEQRES 5 A 89 GLN GLY ILE ALA THR VAL THR PRO ALA ILE VAL GLN ALA SEQRES 6 A 89 CYS THR GLN ASP LYS GLN ALA ASN PHE LYS ASP LYS VAL SEQRES 7 A 89 LYS GLY GLU TRP ASP LYS ILE LYS LYS ASP MET SEQRES 1 B 89 ALA ASP ALA GLN LYS ALA ALA ASP ASN LYS LYS PRO VAL SEQRES 2 B 89 ASN SER TRP THR CYS GLU ASP PHE LEU ALA VAL ASP GLU SEQRES 3 B 89 SER PHE GLN PRO THR ALA VAL GLY PHE ALA GLU ALA LEU SEQRES 4 B 89 ASN ASN LYS ASP LYS PRO GLU ASP ALA VAL LEU ASP VAL SEQRES 5 B 89 GLN GLY ILE ALA THR VAL THR PRO ALA ILE VAL GLN ALA SEQRES 6 B 89 CYS THR GLN ASP LYS GLN ALA ASN PHE LYS ASP LYS VAL SEQRES 7 B 89 LYS GLY GLU TRP ASP LYS ILE LYS LYS ASP MET HELIX 1 AA1 THR A 17 LEU A 22 5 6 HELIX 2 AA2 PHE A 28 LEU A 39 1 12 HELIX 3 AA3 LYS A 44 ALA A 48 5 5 HELIX 4 AA4 ASP A 51 ASP A 69 1 19 HELIX 5 AA5 LYS A 75 LYS A 86 1 12 HELIX 6 AA6 THR B 106 LEU B 111 1 6 HELIX 7 AA7 PHE B 117 ASN B 130 1 14 HELIX 8 AA8 ASP B 140 ASP B 158 1 19 HELIX 9 AA9 ASN B 162 LYS B 175 1 14 SSBOND 1 CYS A 18 CYS A 66 1555 1555 2.05 SSBOND 2 CYS B 107 CYS B 155 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1