HEADER TRANSFERASE 16-JAN-17 5WZ3 TITLE CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA POLYMERASE(RDRP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS5 RDRP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2795-3407; COMPND 5 SYNONYM: GENOME POLYPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ZIKA VIRUS, NS5, RDRP, RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.DUAN,H.SONG,J.QI,Y.SHI,G.F.GAO REVDAT 3 22-NOV-23 5WZ3 1 REMARK REVDAT 2 30-AUG-17 5WZ3 1 JRNL REVDAT 1 08-MAR-17 5WZ3 0 JRNL AUTH W.DUAN,H.SONG,H.WANG,Y.CHAI,C.SU,J.QI,Y.SHI,G.F.GAO JRNL TITL THE CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 REVEALS CONSERVED JRNL TITL 2 DRUG TARGETS. JRNL REF EMBO J. V. 36 919 2017 JRNL REFN ESSN 1460-2075 JRNL PMID 28254839 JRNL DOI 10.15252/EMBJ.201696241 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 61141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1648 - 4.9712 0.97 2798 153 0.1838 0.1853 REMARK 3 2 4.9712 - 3.9477 1.00 2828 158 0.1484 0.1787 REMARK 3 3 3.9477 - 3.4492 1.00 2807 167 0.1638 0.1827 REMARK 3 4 3.4492 - 3.1341 1.00 2806 155 0.1710 0.2145 REMARK 3 5 3.1341 - 2.9096 1.00 2801 156 0.1796 0.1678 REMARK 3 6 2.9096 - 2.7381 1.00 2812 139 0.1844 0.2122 REMARK 3 7 2.7381 - 2.6010 1.00 2842 131 0.1810 0.2322 REMARK 3 8 2.6010 - 2.4879 1.00 2810 139 0.1802 0.2253 REMARK 3 9 2.4879 - 2.3921 1.00 2823 141 0.1863 0.2115 REMARK 3 10 2.3921 - 2.3096 1.00 2805 127 0.1824 0.1983 REMARK 3 11 2.3096 - 2.2374 1.00 2815 121 0.1792 0.2472 REMARK 3 12 2.2374 - 2.1734 1.00 2820 138 0.1784 0.2263 REMARK 3 13 2.1734 - 2.1162 1.00 2797 139 0.1774 0.2167 REMARK 3 14 2.1162 - 2.0646 1.00 2828 140 0.1820 0.2366 REMARK 3 15 2.0646 - 2.0177 1.00 2791 149 0.1902 0.2293 REMARK 3 16 2.0177 - 1.9747 1.00 2800 142 0.1991 0.2615 REMARK 3 17 1.9747 - 1.9352 1.00 2802 127 0.2001 0.2178 REMARK 3 18 1.9352 - 1.8987 1.00 2824 145 0.1912 0.2273 REMARK 3 19 1.8987 - 1.8648 0.98 2708 126 0.2074 0.2198 REMARK 3 20 1.8648 - 1.8332 0.92 2587 139 0.2161 0.2381 REMARK 3 21 1.8332 - 1.8036 0.82 2284 121 0.2402 0.2930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4756 REMARK 3 ANGLE : 0.958 6432 REMARK 3 CHIRALITY : 0.041 672 REMARK 3 PLANARITY : 0.005 823 REMARK 3 DIHEDRAL : 14.512 1766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.7192 10.7884 52.0849 REMARK 3 T TENSOR REMARK 3 T11: 0.3658 T22: 0.2465 REMARK 3 T33: 0.1378 T12: -0.0574 REMARK 3 T13: 0.0483 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0568 L22: 0.0207 REMARK 3 L33: 0.0355 L12: -0.0292 REMARK 3 L13: -0.0414 L23: -0.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.1626 S12: 0.0717 S13: 0.0584 REMARK 3 S21: -0.2546 S22: -0.2623 S23: -0.2247 REMARK 3 S31: 0.0329 S32: 0.2374 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0383 10.1272 73.0575 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.0930 REMARK 3 T33: 0.1013 T12: -0.0224 REMARK 3 T13: 0.0236 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.2149 L22: 0.0192 REMARK 3 L33: 0.3834 L12: 0.1849 REMARK 3 L13: -0.0518 L23: 0.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0628 S13: 0.0434 REMARK 3 S21: -0.1466 S22: 0.0610 S23: 0.0472 REMARK 3 S31: -0.1123 S32: 0.0581 S33: 0.0262 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 495 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6622 -6.3417 60.0202 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.1099 REMARK 3 T33: 0.0822 T12: -0.1420 REMARK 3 T13: -0.2017 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 0.1446 L22: 0.1426 REMARK 3 L33: 0.1065 L12: 0.0069 REMARK 3 L13: -0.0739 L23: 0.1052 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: -0.0429 S13: -0.3782 REMARK 3 S21: -0.2584 S22: 0.3521 S23: 0.6713 REMARK 3 S31: 0.0069 S32: -0.1276 S33: 0.0686 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 496 THROUGH 724 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5079 -1.8687 82.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0609 REMARK 3 T33: 0.0607 T12: -0.0136 REMARK 3 T13: -0.0006 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.3995 L22: 0.3048 REMARK 3 L33: 0.5980 L12: 0.0137 REMARK 3 L13: -0.2992 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0358 S13: -0.0493 REMARK 3 S21: -0.0335 S22: 0.0735 S23: 0.0020 REMARK 3 S31: -0.0250 S32: 0.0662 S33: 0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 725 THROUGH 887 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8746 10.7838 86.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0853 REMARK 3 T33: 0.0789 T12: 0.0172 REMARK 3 T13: 0.0091 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.5740 L22: 0.4638 REMARK 3 L33: 0.5362 L12: -0.0388 REMARK 3 L13: 0.3403 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0161 S13: 0.0722 REMARK 3 S21: -0.0401 S22: -0.0734 S23: -0.0252 REMARK 3 S31: -0.0395 S32: -0.1207 S33: -0.0882 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.72929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM D-GLUCOSE, 20 MM D-MANNOSE, 20 REMARK 280 MM D-GALACTOSE, 20 MM L-FUCOSE, 20 MM D-XYLOSE, 20 MM N-ACETYL-D- REMARK 280 GLUCOSAMINE, 60.9 MM TRIS (BASE), 39.1 MM BICINE, PH 8.5, 12 % V/ REMARK 280 V ETHYLENE GLYCOL AND 6 % W/V PEG 8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.42550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 SER A 320 REMARK 465 ALA A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 ASP A 346 REMARK 465 ASN A 407 REMARK 465 ALA A 408 REMARK 465 ALA A 409 REMARK 465 LEU A 410 REMARK 465 GLY A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 PHE A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 GLU A 417 REMARK 465 LYS A 418 REMARK 465 GLU A 419 REMARK 465 TRP A 420 REMARK 465 LYS A 421 REMARK 465 THR A 422 REMARK 465 ALA A 423 REMARK 465 VAL A 424 REMARK 465 MET A 456 REMARK 465 GLY A 457 REMARK 465 LYS A 458 REMARK 465 ARG A 459 REMARK 465 GLU A 460 REMARK 465 LYS A 461 REMARK 465 LYS A 462 REMARK 465 GLN A 463 REMARK 465 GLY A 464 REMARK 465 GLU A 465 REMARK 465 PHE A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 GLY A 471 REMARK 465 SER A 472 REMARK 465 ARG A 473 REMARK 465 ALA A 474 REMARK 465 ILE A 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 586 CG CD OE1 OE2 REMARK 470 THR A 693 CG2 REMARK 470 TRP A 748 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 748 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1036 O HOH A 1401 1.89 REMARK 500 O HOH A 1209 O HOH A 1401 1.95 REMARK 500 O HOH A 1104 O HOH A 1337 1.95 REMARK 500 OD1 ASN A 867 O HOH A 1001 1.97 REMARK 500 NE2 GLN A 634 CD ARG A 640 1.97 REMARK 500 NZ LYS A 438 O HOH A 1002 2.01 REMARK 500 O HOH A 1258 O HOH A 1337 2.02 REMARK 500 O HOH A 1234 O HOH A 1300 2.03 REMARK 500 O HOH A 1285 O HOH A 1427 2.04 REMARK 500 OE1 GLN A 650 O HOH A 1003 2.05 REMARK 500 O HOH A 1338 O HOH A 1402 2.05 REMARK 500 SD MET A 633 O HOH A 1466 2.06 REMARK 500 O HOH A 1404 O HOH A 1440 2.11 REMARK 500 O HOH A 1207 O HOH A 1291 2.11 REMARK 500 NE2 GLN A 449 O HOH A 1002 2.11 REMARK 500 O HOH A 1481 O HOH A 1498 2.13 REMARK 500 O HOH A 1130 O HOH A 1245 2.13 REMARK 500 OE1 GLU A 297 O HOH A 1004 2.15 REMARK 500 O HOH A 1315 O HOH A 1459 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1212 O HOH A 1445 2858 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 289 26.87 -144.87 REMARK 500 VAL A 508 17.76 -140.07 REMARK 500 ALA A 585 -157.96 -121.37 REMARK 500 GLN A 600 159.22 71.55 REMARK 500 ARG A 640 -125.26 -72.85 REMARK 500 LYS A 688 57.30 -94.58 REMARK 500 ALA A 746 -73.10 -135.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1498 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1499 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1500 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1501 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1502 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 8.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 439 OE2 REMARK 620 2 HIS A 443 NE2 100.9 REMARK 620 3 CYS A 448 SG 100.6 120.7 REMARK 620 4 CYS A 451 SG 114.9 110.1 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 714 NE2 REMARK 620 2 CYS A 730 SG 113.3 REMARK 620 3 CYS A 849 SG 102.5 124.9 REMARK 620 4 HOH A1055 O 95.6 112.5 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WZ1 RELATED DB: PDB REMARK 900 RELATED ID: 5WZ2 RELATED DB: PDB DBREF1 5WZ3 A 275 887 UNP A0A1B2ZC85_ZIKV DBREF2 5WZ3 A A0A1B2ZC85 2795 3407 SEQADV 5WZ3 HIS A 269 UNP A0A1B2ZC8 EXPRESSION TAG SEQADV 5WZ3 HIS A 270 UNP A0A1B2ZC8 EXPRESSION TAG SEQADV 5WZ3 HIS A 271 UNP A0A1B2ZC8 EXPRESSION TAG SEQADV 5WZ3 HIS A 272 UNP A0A1B2ZC8 EXPRESSION TAG SEQADV 5WZ3 HIS A 273 UNP A0A1B2ZC8 EXPRESSION TAG SEQADV 5WZ3 HIS A 274 UNP A0A1B2ZC8 EXPRESSION TAG SEQRES 1 A 619 HIS HIS HIS HIS HIS HIS MET LYS ILE ILE GLY ASN ARG SEQRES 2 A 619 ILE GLU ARG ILE ARG SER GLU HIS ALA GLU THR TRP PHE SEQRES 3 A 619 PHE ASP GLU ASN HIS PRO TYR ARG THR TRP ALA TYR HIS SEQRES 4 A 619 GLY SER TYR GLU ALA PRO THR GLN GLY SER ALA SER SER SEQRES 5 A 619 LEU ILE ASN GLY VAL VAL ARG LEU LEU SER LYS PRO TRP SEQRES 6 A 619 ASP VAL VAL THR GLY VAL THR GLY ILE ALA MET THR ASP SEQRES 7 A 619 THR THR PRO TYR GLY GLN GLN ARG VAL PHE LYS GLU LYS SEQRES 8 A 619 VAL ASP THR ARG VAL PRO ASP PRO GLN GLU GLY THR ARG SEQRES 9 A 619 GLN VAL MET SER MET VAL SER SER TRP LEU TRP LYS GLU SEQRES 10 A 619 LEU GLY LYS HIS LYS ARG PRO ARG VAL CYS THR LYS GLU SEQRES 11 A 619 GLU PHE ILE ASN LYS VAL ARG SER ASN ALA ALA LEU GLY SEQRES 12 A 619 ALA ILE PHE GLU GLU GLU LYS GLU TRP LYS THR ALA VAL SEQRES 13 A 619 GLU ALA VAL ASN ASP PRO ARG PHE TRP ALA LEU VAL ASP SEQRES 14 A 619 LYS GLU ARG GLU HIS HIS LEU ARG GLY GLU CYS GLN SER SEQRES 15 A 619 CYS VAL TYR ASN MET MET GLY LYS ARG GLU LYS LYS GLN SEQRES 16 A 619 GLY GLU PHE GLY LYS ALA LYS GLY SER ARG ALA ILE TRP SEQRES 17 A 619 TYR MET TRP LEU GLY ALA ARG PHE LEU GLU PHE GLU ALA SEQRES 18 A 619 LEU GLY PHE LEU ASN GLU ASP HIS TRP MET GLY ARG GLU SEQRES 19 A 619 ASN SER GLY GLY GLY VAL GLU GLY LEU GLY LEU GLN ARG SEQRES 20 A 619 LEU GLY TYR VAL LEU GLU GLU MET SER ARG ILE PRO GLY SEQRES 21 A 619 GLY ARG MET TYR ALA ASP ASP THR ALA GLY TRP ASP THR SEQRES 22 A 619 ARG ILE SER ARG PHE ASP LEU GLU ASN GLU ALA LEU ILE SEQRES 23 A 619 THR ASN GLN MET GLU LYS GLY HIS ARG ALA LEU ALA LEU SEQRES 24 A 619 ALA ILE ILE LYS TYR THR TYR GLN ASN LYS VAL VAL LYS SEQRES 25 A 619 VAL LEU ARG PRO ALA GLU LYS GLY LYS THR VAL MET ASP SEQRES 26 A 619 ILE ILE SER ARG GLN ASP GLN ARG GLY SER GLY GLN VAL SEQRES 27 A 619 VAL THR TYR ALA LEU ASN THR PHE THR ASN LEU VAL VAL SEQRES 28 A 619 GLN LEU ILE ARG ASN MET GLU ALA GLU GLU VAL LEU GLU SEQRES 29 A 619 MET GLN ASP LEU TRP LEU LEU ARG ARG SER GLU LYS VAL SEQRES 30 A 619 THR ASN TRP LEU GLN SER ASN GLY TRP ASP ARG LEU LYS SEQRES 31 A 619 ARG MET ALA VAL SER GLY ASP ASP CYS VAL VAL LYS PRO SEQRES 32 A 619 ILE ASP ASP ARG PHE ALA HIS ALA LEU ARG PHE LEU ASN SEQRES 33 A 619 ASP MET GLY LYS VAL ARG LYS ASP THR GLN GLU TRP LYS SEQRES 34 A 619 PRO SER THR GLY TRP ASP ASN TRP GLU GLU VAL PRO PHE SEQRES 35 A 619 CYS SER HIS HIS PHE ASN LYS LEU HIS LEU LYS ASP GLY SEQRES 36 A 619 ARG SER ILE VAL VAL PRO CYS ARG HIS GLN ASP GLU LEU SEQRES 37 A 619 ILE GLY ARG ALA ARG VAL SER PRO GLY ALA GLY TRP SER SEQRES 38 A 619 ILE ARG GLU THR ALA CYS LEU ALA LYS SER TYR ALA GLN SEQRES 39 A 619 MET TRP GLN LEU LEU TYR PHE HIS ARG ARG ASP LEU ARG SEQRES 40 A 619 LEU MET ALA ASN ALA ILE CYS SER SER VAL PRO VAL ASP SEQRES 41 A 619 TRP VAL PRO THR GLY ARG THR THR TRP SER ILE HIS GLY SEQRES 42 A 619 LYS GLY GLU TRP MET THR THR GLU ASP MET LEU VAL VAL SEQRES 43 A 619 TRP ASN ARG VAL TRP ILE GLU GLU ASN ASP HIS MET GLU SEQRES 44 A 619 ASP LYS THR PRO VAL THR LYS TRP THR ASP ILE PRO TYR SEQRES 45 A 619 LEU GLY LYS ARG GLU ASP LEU TRP CYS GLY SER LEU ILE SEQRES 46 A 619 GLY HIS ARG PRO ARG THR THR TRP ALA GLU ASN ILE LYS SEQRES 47 A 619 ASN THR VAL ASN MET VAL ARG ARG ILE ILE GLY ASP GLU SEQRES 48 A 619 GLU LYS TYR MET ASP TYR LEU SER HET ZN A 901 1 HET ZN A 902 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *503(H2 O) HELIX 1 AA1 HIS A 274 HIS A 289 1 16 HELIX 2 AA2 ASN A 323 LEU A 329 1 7 HELIX 3 AA3 SER A 330 VAL A 335 5 6 HELIX 4 AA4 VAL A 336 GLY A 341 1 6 HELIX 5 AA5 THR A 348 VAL A 360 1 13 HELIX 6 AA6 GLN A 368 GLY A 387 1 20 HELIX 7 AA7 THR A 396 SER A 406 1 11 HELIX 8 AA8 ASP A 429 GLY A 446 1 18 HELIX 9 AA9 TRP A 479 GLY A 491 1 13 HELIX 10 AB1 GLY A 491 ASP A 496 1 6 HELIX 11 AB2 GLY A 500 GLY A 505 1 6 HELIX 12 AB3 GLY A 512 ILE A 526 1 15 HELIX 13 AB4 GLY A 538 ILE A 543 5 6 HELIX 14 AB5 SER A 544 ALA A 552 1 9 HELIX 15 AB6 LEU A 553 MET A 558 5 6 HELIX 16 AB7 GLU A 559 TYR A 574 1 16 HELIX 17 AB8 GLU A 586 GLY A 588 5 3 HELIX 18 AB9 VAL A 607 GLU A 628 1 22 HELIX 19 AC1 GLU A 632 LEU A 636 5 5 HELIX 20 AC2 SER A 642 ARG A 659 1 18 HELIX 21 AC3 ASP A 673 ALA A 679 5 7 HELIX 22 AC4 LEU A 680 MET A 686 1 7 HELIX 23 AC5 ASN A 704 VAL A 708 5 5 HELIX 24 AC6 HIS A 732 ARG A 741 1 10 HELIX 25 AC7 SER A 749 TYR A 768 1 20 HELIX 26 AC8 ARG A 771 VAL A 785 1 15 HELIX 27 AC9 ASP A 810 ILE A 820 1 11 HELIX 28 AD1 LYS A 834 ILE A 838 5 5 HELIX 29 AD2 GLY A 842 CYS A 849 1 8 HELIX 30 AD3 HIS A 855 ASN A 864 1 10 HELIX 31 AD4 ASN A 864 GLY A 877 1 14 SHEET 1 AA1 5 ALA A 305 ALA A 312 0 SHEET 2 AA1 5 THR A 590 ARG A 597 -1 O THR A 590 N ALA A 312 SHEET 3 AA1 5 LYS A 577 PRO A 584 -1 N VAL A 581 O ASP A 593 SHEET 4 AA1 5 TYR A 453 ASN A 454 1 N TYR A 453 O LYS A 580 SHEET 5 AA1 5 TYR A 477 MET A 478 -1 O TYR A 477 N ASN A 454 SHEET 1 AA2 2 MET A 660 SER A 663 0 SHEET 2 AA2 2 ASP A 666 VAL A 669 -1 O ASP A 666 N SER A 663 SHEET 1 AA3 2 HIS A 714 HIS A 719 0 SHEET 2 AA3 2 SER A 725 CYS A 730 -1 O ILE A 726 N LEU A 718 LINK OE2 GLU A 439 ZN ZN A 902 1555 1555 2.10 LINK NE2 HIS A 443 ZN ZN A 902 1555 1555 2.03 LINK SG CYS A 448 ZN ZN A 902 1555 1555 2.29 LINK SG CYS A 451 ZN ZN A 902 1555 1555 2.30 LINK NE2 HIS A 714 ZN ZN A 901 1555 1555 2.02 LINK SG CYS A 730 ZN ZN A 901 1555 1555 2.32 LINK SG CYS A 849 ZN ZN A 901 1555 1555 2.30 LINK ZN ZN A 901 O HOH A1055 1555 1555 2.05 SITE 1 AC1 4 HIS A 714 CYS A 730 CYS A 849 HOH A1055 SITE 1 AC2 4 GLU A 439 HIS A 443 CYS A 448 CYS A 451 CRYST1 63.528 84.851 69.199 90.00 113.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015741 0.000000 0.006802 0.00000 SCALE2 0.000000 0.011785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015743 0.00000