HEADER HYDROLASE 17-JAN-17 5WZ4 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS VAPC20 (RV2549C), TITLE 2 SARCIN-RICIN LOOP CLEAVING TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RRNA-SPECIFIC ENDONUCLEASE VAPC20; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBONUCLEASE VAPC20,RNASE VAPC20,TOXIN VAPC20; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: VAPC20, RV2549C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS VAPC TOXIN, TOXIN-ANTITOXIN SYSTEM, SARCIN-RICIN LOOP CLEAVING TOXIN, KEYWDS 2 PIN-DOMAIN, HOMODIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.G.THAKUR,A.DEEP REVDAT 4 01-MAR-23 5WZ4 1 SOURCE REVDAT 3 11-APR-18 5WZ4 1 SOURCE DBREF SEQADV REVDAT 2 13-DEC-17 5WZ4 1 JRNL REVDAT 1 25-OCT-17 5WZ4 0 JRNL AUTH A.DEEP,S.KAUNDAL,S.AGARWAL,R.SINGH,K.G.THAKUR JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS VAPC20 TOXIN JRNL TITL 2 AND ITS INTERACTIONS WITH COGNATE ANTITOXIN, VAPB20, SUGGEST JRNL TITL 3 A MODEL FOR TOXIN-ANTITOXIN ASSEMBLY. JRNL REF FEBS J. V. 284 4066 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28986943 JRNL DOI 10.1111/FEBS.14289 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 21466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.3175 - 3.5425 0.99 2827 153 0.1450 0.1612 REMARK 3 2 3.5425 - 2.8151 0.99 2697 130 0.1618 0.2100 REMARK 3 3 2.8151 - 2.4602 0.98 2652 130 0.1732 0.1981 REMARK 3 4 2.4602 - 2.2357 0.97 2622 120 0.1696 0.2135 REMARK 3 5 2.2357 - 2.0757 0.96 2546 139 0.1734 0.2324 REMARK 3 6 2.0757 - 1.9535 0.94 2496 129 0.1936 0.2513 REMARK 3 7 1.9535 - 1.8557 0.88 2330 132 0.2399 0.2840 REMARK 3 8 1.8557 - 1.7750 0.85 2238 125 0.2841 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2123 REMARK 3 ANGLE : 0.683 2889 REMARK 3 CHIRALITY : 0.032 314 REMARK 3 PLANARITY : 0.003 371 REMARK 3 DIHEDRAL : 15.392 741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0013 40.9118 71.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1447 REMARK 3 T33: 0.1173 T12: 0.0514 REMARK 3 T13: -0.0203 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: -0.0000 L22: 0.0061 REMARK 3 L33: 0.0003 L12: -0.0015 REMARK 3 L13: 0.0004 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: -0.0470 S13: 0.0529 REMARK 3 S21: 0.0371 S22: 0.0385 S23: -0.0189 REMARK 3 S31: -0.0704 S32: -0.1068 S33: 0.0098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4374 26.3912 67.8455 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0807 REMARK 3 T33: 0.0840 T12: -0.0171 REMARK 3 T13: 0.0361 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1458 L22: 0.0541 REMARK 3 L33: 0.2362 L12: 0.0727 REMARK 3 L13: 0.0099 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: -0.0262 S13: -0.0443 REMARK 3 S21: 0.0991 S22: 0.0413 S23: 0.0064 REMARK 3 S31: 0.1760 S32: -0.0792 S33: 0.0836 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5979 33.5215 64.7003 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0814 REMARK 3 T33: 0.0568 T12: 0.0028 REMARK 3 T13: 0.0120 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.0006 REMARK 3 L33: 0.0025 L12: 0.0003 REMARK 3 L13: 0.0061 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.0208 S13: 0.0053 REMARK 3 S21: -0.0120 S22: -0.0223 S23: -0.0418 REMARK 3 S31: -0.0046 S32: 0.0034 S33: -0.0048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2482 38.2105 69.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.1320 REMARK 3 T33: 0.1418 T12: -0.0073 REMARK 3 T13: 0.0336 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 0.0170 L22: 0.0180 REMARK 3 L33: 0.1305 L12: -0.0068 REMARK 3 L13: 0.0411 L23: -0.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.1549 S13: 0.1339 REMARK 3 S21: 0.0816 S22: 0.0946 S23: 0.0466 REMARK 3 S31: 0.0276 S32: -0.0269 S33: 0.0421 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6862 20.5996 65.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.1065 REMARK 3 T33: 0.1044 T12: -0.0024 REMARK 3 T13: 0.0058 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0139 L22: 0.0068 REMARK 3 L33: 0.0100 L12: 0.0158 REMARK 3 L13: 0.0043 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0218 S13: -0.1325 REMARK 3 S21: 0.0947 S22: -0.0256 S23: -0.0358 REMARK 3 S31: 0.0276 S32: -0.0041 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8990 24.9476 46.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0904 REMARK 3 T33: 0.0641 T12: -0.0152 REMARK 3 T13: -0.0023 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0056 REMARK 3 L33: 0.0040 L12: -0.0060 REMARK 3 L13: 0.0016 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0626 S13: -0.0606 REMARK 3 S21: -0.0638 S22: 0.0997 S23: 0.0660 REMARK 3 S31: 0.0373 S32: -0.0166 S33: 0.0174 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5594 32.3824 48.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0914 REMARK 3 T33: 0.0962 T12: 0.0155 REMARK 3 T13: -0.0149 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0298 L22: 0.0068 REMARK 3 L33: 0.0291 L12: -0.0082 REMARK 3 L13: 0.0233 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.1920 S13: 0.1338 REMARK 3 S21: -0.0378 S22: -0.0359 S23: 0.1238 REMARK 3 S31: -0.0292 S32: -0.0856 S33: -0.0111 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4220 22.9304 55.1275 REMARK 3 T TENSOR REMARK 3 T11: -0.1544 T22: 0.0216 REMARK 3 T33: 0.0772 T12: -0.1340 REMARK 3 T13: 0.0669 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.0318 L22: 0.0354 REMARK 3 L33: 0.0141 L12: -0.0279 REMARK 3 L13: 0.0146 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0113 S13: -0.0786 REMARK 3 S21: 0.0372 S22: 0.0443 S23: 0.0628 REMARK 3 S31: 0.0392 S32: -0.0730 S33: 0.0191 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8758 29.4958 59.8465 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.1171 REMARK 3 T33: 0.1024 T12: -0.0132 REMARK 3 T13: 0.0080 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0321 L22: 0.0181 REMARK 3 L33: 0.0658 L12: 0.0047 REMARK 3 L13: 0.0316 L23: 0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.0497 S13: -0.0788 REMARK 3 S21: -0.0050 S22: -0.0312 S23: 0.0463 REMARK 3 S31: -0.0515 S32: 0.0291 S33: -0.0099 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7909 31.8156 58.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.2406 REMARK 3 T33: 0.0901 T12: 0.0252 REMARK 3 T13: 0.0029 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.0067 REMARK 3 L33: 0.0200 L12: 0.0075 REMARK 3 L13: 0.0004 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0514 S13: 0.0169 REMARK 3 S21: 0.0449 S22: 0.0304 S23: 0.0078 REMARK 3 S31: -0.0346 S32: -0.0190 S33: 0.0022 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8264 41.5874 42.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.0524 REMARK 3 T33: 0.1305 T12: -0.0463 REMARK 3 T13: -0.0004 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0279 L22: 0.0111 REMARK 3 L33: 0.0619 L12: -0.0147 REMARK 3 L13: 0.0352 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: 0.1149 S13: 0.1410 REMARK 3 S21: -0.0620 S22: 0.0177 S23: -0.1012 REMARK 3 S31: -0.1336 S32: 0.1404 S33: -0.0051 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4833 29.2919 50.5228 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0292 REMARK 3 T33: 0.0468 T12: 0.0049 REMARK 3 T13: 0.0011 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0366 REMARK 3 L33: 0.0534 L12: 0.0041 REMARK 3 L13: -0.0095 L23: -0.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0288 S13: -0.0533 REMARK 3 S21: 0.0038 S22: -0.0059 S23: -0.0499 REMARK 3 S31: 0.1436 S32: 0.0833 S33: 0.0117 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3022 37.1485 44.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0513 REMARK 3 T33: 0.0668 T12: 0.0401 REMARK 3 T13: -0.0194 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.0575 REMARK 3 L33: 0.0201 L12: 0.0676 REMARK 3 L13: 0.0167 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.1225 S13: 0.0939 REMARK 3 S21: -0.0656 S22: 0.1173 S23: -0.0324 REMARK 3 S31: -0.1371 S32: -0.0789 S33: 0.0070 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2184 25.1399 57.4065 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.1092 REMARK 3 T33: 0.0629 T12: -0.0006 REMARK 3 T13: 0.0204 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.0453 L22: 0.0255 REMARK 3 L33: 0.0396 L12: -0.0122 REMARK 3 L13: -0.0050 L23: 0.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.0682 S13: -0.1061 REMARK 3 S21: 0.0299 S22: -0.0075 S23: -0.0920 REMARK 3 S31: 0.1494 S32: 0.0561 S33: -0.0073 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6107 36.3526 65.7301 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.1251 REMARK 3 T33: 0.1205 T12: -0.0165 REMARK 3 T13: -0.0033 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 0.0214 L22: 0.0152 REMARK 3 L33: 0.0274 L12: 0.0150 REMARK 3 L13: 0.0139 L23: 0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.1475 S13: 0.1586 REMARK 3 S21: 0.0225 S22: 0.0268 S23: -0.0216 REMARK 3 S31: 0.0066 S32: 0.0587 S33: 0.0007 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3933 34.5503 56.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0265 REMARK 3 T33: 0.0625 T12: -0.0066 REMARK 3 T13: -0.0093 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.0343 L22: 0.0598 REMARK 3 L33: 0.0915 L12: 0.0011 REMARK 3 L13: -0.0237 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0734 S12: -0.0240 S13: -0.0220 REMARK 3 S21: 0.0450 S22: 0.0376 S23: 0.0174 REMARK 3 S31: -0.0543 S32: 0.0209 S33: -0.0510 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97885 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.775 REMARK 200 RESOLUTION RANGE LOW (A) : 78.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60100 REMARK 200 R SYM FOR SHELL (I) : 0.60100 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M POTASSIUM THIOCYANATE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 131 REMARK 465 MSE B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLN B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH A 313 1.94 REMARK 500 O HOH A 322 O HOH A 328 2.04 REMARK 500 O HOH A 328 O HOH A 344 2.05 REMARK 500 O HOH B 315 O HOH B 323 2.09 REMARK 500 NH2 ARG A 70 O HOH A 201 2.11 REMARK 500 OD2 ASP A 98 O HOH A 202 2.11 REMARK 500 NE ARG A 19 O HOH A 203 2.12 REMARK 500 O HOH A 264 O HOH A 280 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 117 -2.97 81.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WZF RELATED DB: PDB DBREF 5WZ4 A 2 131 UNP P95004 VPC20_MYCTU 2 131 DBREF 5WZ4 B 2 131 UNP P95004 VPC20_MYCTU 2 131 SEQADV 5WZ4 MSE A -12 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 GLY A -11 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER A -10 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER A -9 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -8 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -7 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -6 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -5 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -4 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS A -3 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER A -2 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 GLN A -1 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 ALA A 0 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER A 1 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 ALA A 5 UNP P95004 ASP 5 ENGINEERED MUTATION SEQADV 5WZ4 MSE B -12 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 GLY B -11 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER B -10 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER B -9 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -8 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -7 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -6 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -5 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -4 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 HIS B -3 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER B -2 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 GLN B -1 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 ALA B 0 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 SER B 1 UNP P95004 EXPRESSION TAG SEQADV 5WZ4 ALA B 5 UNP P95004 ASP 5 ENGINEERED MUTATION SEQRES 1 A 144 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ALA SEQRES 2 A 144 SER ILE PHE VAL ALA THR SER PHE TRP ALA ALA LEU GLY SEQRES 3 A 144 ASN ALA GLY ASP ALA ARG HIS GLY THR ALA LYS ARG LEU SEQRES 4 A 144 TRP ALA SER LYS PRO PRO VAL VAL MSE THR SER ASN HIS SEQRES 5 A 144 VAL LEU GLY GLU THR TRP THR LEU LEU ASN ARG ARG CSO SEQRES 6 A 144 GLY HIS ARG ALA ALA VAL ALA ALA ALA ALA ILE ARG LEU SEQRES 7 A 144 SER THR VAL VAL ARG VAL GLU HIS VAL THR ALA ASP LEU SEQRES 8 A 144 GLU GLU GLN ALA TRP GLU TRP LEU VAL ARG HIS ASP GLU SEQRES 9 A 144 ARG GLU TYR SER PHE VAL ASP ALA THR SER PHE ALA VAL SEQRES 10 A 144 MSE ARG LYS LYS GLY ILE GLN ASN ALA TYR ALA PHE ASP SEQRES 11 A 144 GLY ASP PHE SER ALA ALA GLY PHE VAL GLU VAL ARG PRO SEQRES 12 A 144 GLU SEQRES 1 B 144 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ALA SEQRES 2 B 144 SER ILE PHE VAL ALA THR SER PHE TRP ALA ALA LEU GLY SEQRES 3 B 144 ASN ALA GLY ASP ALA ARG HIS GLY THR ALA LYS ARG LEU SEQRES 4 B 144 TRP ALA SER LYS PRO PRO VAL VAL MSE THR SER ASN HIS SEQRES 5 B 144 VAL LEU GLY GLU THR TRP THR LEU LEU ASN ARG ARG CSO SEQRES 6 B 144 GLY HIS ARG ALA ALA VAL ALA ALA ALA ALA ILE ARG LEU SEQRES 7 B 144 SER THR VAL VAL ARG VAL GLU HIS VAL THR ALA ASP LEU SEQRES 8 B 144 GLU GLU GLN ALA TRP GLU TRP LEU VAL ARG HIS ASP GLU SEQRES 9 B 144 ARG GLU TYR SER PHE VAL ASP ALA THR SER PHE ALA VAL SEQRES 10 B 144 MSE ARG LYS LYS GLY ILE GLN ASN ALA TYR ALA PHE ASP SEQRES 11 B 144 GLY ASP PHE SER ALA ALA GLY PHE VAL GLU VAL ARG PRO SEQRES 12 B 144 GLU MODRES 5WZ4 MSE A 35 MET MODIFIED RESIDUE MODRES 5WZ4 CSO A 52 CYS MODIFIED RESIDUE MODRES 5WZ4 MSE A 105 MET MODIFIED RESIDUE MODRES 5WZ4 MSE B 35 MET MODIFIED RESIDUE MODRES 5WZ4 CSO B 52 CYS MODIFIED RESIDUE MODRES 5WZ4 MSE B 105 MET MODIFIED RESIDUE HET MSE A 35 13 HET CSO A 52 7 HET MSE A 105 8 HET MSE B 35 8 HET CSO B 52 7 HET MSE B 105 8 HETNAM MSE SELENOMETHIONINE HETNAM CSO S-HYDROXYCYSTEINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 HOH *272(H2 O) HELIX 1 AA1 ALA A 5 GLY A 13 1 9 HELIX 2 AA2 ARG A 19 SER A 29 1 11 HELIX 3 AA3 ASN A 38 GLY A 53 1 16 HELIX 4 AA4 GLY A 53 ARG A 64 1 12 HELIX 5 AA5 THR A 75 HIS A 89 1 15 HELIX 6 AA6 SER A 95 GLY A 109 1 15 HELIX 7 AA7 GLY A 118 ALA A 123 1 6 HELIX 8 AA8 ALA B 5 GLY B 13 1 9 HELIX 9 AA9 ARG B 19 SER B 29 1 11 HELIX 10 AB1 ASN B 38 CSO B 52 1 15 HELIX 11 AB2 GLY B 53 ILE B 63 1 11 HELIX 12 AB3 ARG B 64 SER B 66 5 3 HELIX 13 AB4 THR B 75 HIS B 89 1 15 HELIX 14 AB5 SER B 95 GLY B 109 1 15 HELIX 15 AB6 GLY B 118 ALA B 123 1 6 SHEET 1 AA1 5 VAL A 69 GLU A 72 0 SHEET 2 AA1 5 VAL A 34 SER A 37 1 N VAL A 34 O ARG A 70 SHEET 3 AA1 5 ILE A 2 VAL A 4 1 N VAL A 4 O MSE A 35 SHEET 4 AA1 5 ASN A 112 TYR A 114 1 O TYR A 114 N PHE A 3 SHEET 5 AA1 5 VAL A 126 GLU A 127 1 O VAL A 126 N ALA A 113 SHEET 1 AA2 5 VAL B 69 GLU B 72 0 SHEET 2 AA2 5 VAL B 34 SER B 37 1 N VAL B 34 O ARG B 70 SHEET 3 AA2 5 ILE B 2 VAL B 4 1 N VAL B 4 O MSE B 35 SHEET 4 AA2 5 ASN B 112 TYR B 114 1 O TYR B 114 N PHE B 3 SHEET 5 AA2 5 VAL B 126 GLU B 127 1 O VAL B 126 N ALA B 113 LINK C VAL A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N THR A 36 1555 1555 1.33 LINK C ARG A 51 N CSO A 52 1555 1555 1.33 LINK C CSO A 52 N GLY A 53 1555 1555 1.33 LINK C VAL A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N ARG A 106 1555 1555 1.33 LINK C VAL B 34 N MSE B 35 1555 1555 1.33 LINK C MSE B 35 N THR B 36 1555 1555 1.33 LINK C ARG B 51 N CSO B 52 1555 1555 1.33 LINK C CSO B 52 N GLY B 53 1555 1555 1.33 LINK C VAL B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N ARG B 106 1555 1555 1.33 CRYST1 48.820 59.280 78.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012719 0.00000