HEADER TRANSFERASE 20-JAN-17 5X0F TITLE FREE SERINE KINASE (E30A MUTANT) IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FREE SERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK0378; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOCOCCUS KODAKARENSIS, CYSTEINE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGATA,M.FUJIHASHI,K.MIKI REVDAT 3 22-NOV-23 5X0F 1 REMARK REVDAT 2 05-JUL-17 5X0F 1 JRNL REVDAT 1 12-APR-17 5X0F 0 JRNL AUTH R.NAGATA,M.FUJIHASHI,H.KAWAMURA,T.SATO,T.FUJITA,H.ATOMI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURAL STUDY ON THE REACTION MECHANISM OF A FREE SERINE JRNL TITL 2 KINASE INVOLVED IN CYSTEINE BIOSYNTHESIS JRNL REF ACS CHEM. BIOL. V. 12 1514 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28358477 JRNL DOI 10.1021/ACSCHEMBIO.7B00064 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1939 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1820 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2641 ; 1.541 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4202 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 7.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;28.938 ;25.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 323 ;12.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2170 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 391 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 982 ; 0.218 ; 0.726 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 981 ; 0.218 ; 0.726 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1231 ; 0.392 ; 1.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1232 ; 0.392 ; 1.087 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 957 ; 0.267 ; 0.747 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 958 ; 0.267 ; 0.748 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1411 ; 0.438 ; 1.114 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2143 ; 3.843 ; 6.425 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2095 ; 3.775 ; 6.055 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2058 27.0758 14.6123 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.5032 REMARK 3 T33: 0.2956 T12: 0.1192 REMARK 3 T13: -0.0903 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 6.8351 L22: 1.6917 REMARK 3 L33: 12.2394 L12: 2.8208 REMARK 3 L13: -9.1201 L23: -3.9482 REMARK 3 S TENSOR REMARK 3 S11: 0.3426 S12: 0.5514 S13: 0.1150 REMARK 3 S21: 0.2294 S22: -0.0516 S23: 0.3078 REMARK 3 S31: -0.4786 S32: -0.6595 S33: -0.2911 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7859 12.3907 8.3974 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.0246 REMARK 3 T33: 0.0985 T12: -0.0167 REMARK 3 T13: -0.0147 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.4030 L22: 3.0671 REMARK 3 L33: 1.8404 L12: -0.3718 REMARK 3 L13: 0.5470 L23: 0.3376 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.0975 S13: -0.1220 REMARK 3 S21: 0.0978 S22: 0.0348 S23: -0.0385 REMARK 3 S31: 0.3144 S32: -0.1398 S33: -0.0482 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6513 14.1893 8.4339 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0434 REMARK 3 T33: 0.1246 T12: 0.0180 REMARK 3 T13: -0.0108 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.0944 L22: 2.7925 REMARK 3 L33: 2.0555 L12: 1.2494 REMARK 3 L13: 0.5595 L23: 0.9680 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.1462 S13: -0.0045 REMARK 3 S21: 0.1596 S22: -0.0079 S23: -0.0981 REMARK 3 S31: -0.0393 S32: 0.0505 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5309 20.4866 36.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.2810 T22: 0.5455 REMARK 3 T33: 0.1351 T12: 0.0332 REMARK 3 T13: -0.0021 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 2.8992 L22: 4.1439 REMARK 3 L33: 5.7348 L12: -1.1719 REMARK 3 L13: -2.7884 L23: 1.5412 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: -0.4516 S13: -0.1342 REMARK 3 S21: 0.7812 S22: -0.1565 S23: 0.2341 REMARK 3 S31: 0.2385 S32: -0.6187 S33: 0.2460 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0297 19.0542 22.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.3024 REMARK 3 T33: 0.1871 T12: 0.0733 REMARK 3 T13: -0.0134 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 1.1336 REMARK 3 L33: 3.7250 L12: 0.0448 REMARK 3 L13: 0.0007 L23: 1.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.3810 S13: 0.0031 REMARK 3 S21: 0.2850 S22: -0.0769 S23: 0.0966 REMARK 3 S31: -0.0522 S32: -0.5921 S33: 0.1214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5X0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SERINE, PH 8.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 19.95150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.01600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.95150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.01600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 TYR A 9 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 15 CD CE NZ REMARK 470 LYS A 25 NZ REMARK 470 LYS A 27 CD CE NZ REMARK 470 LYS A 35 CE NZ REMARK 470 LYS A 52 NZ REMARK 470 LYS A 79 CD CE NZ REMARK 470 LYS A 98 CD CE NZ REMARK 470 PHE A 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 118 CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 163 CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 ARG A 186 NE CZ NH1 NH2 REMARK 470 LYS A 191 CD CE NZ REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 ILE A 194 CG1 CG2 CD1 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 ARG A 214 CZ NH1 NH2 REMARK 470 GLU A 239 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 127 111.67 -166.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0B RELATED DB: PDB REMARK 900 RELATED ID: 5X0E RELATED DB: PDB REMARK 900 RELATED ID: 5X0G RELATED DB: PDB REMARK 900 RELATED ID: 5X0J RELATED DB: PDB REMARK 900 RELATED ID: 5X0K RELATED DB: PDB DBREF 5X0F A 1 242 UNP Q5JD03 Q5JD03_THEKO 1 242 SEQADV 5X0F ALA A 30 UNP Q5JD03 GLU 30 ENGINEERED MUTATION SEQRES 1 A 242 MET GLY VAL GLU LYS VAL PRO LYS TYR ASP ILE PRO THR SEQRES 2 A 242 LYS LYS VAL ASP TYR VAL PHE ILE GLU LEU ASP LYS MET SEQRES 3 A 242 LYS PRO HIS ALA GLN LEU VAL GLN LYS GLU LEU GLU ALA SEQRES 4 A 242 PHE ILE GLU SER VAL THR GLY SER GLY ILE PHE TRP LYS SEQRES 5 A 242 PRO MET LEU LEU ALA LYS VAL PRO GLY GLU ASP MET TYR SEQRES 6 A 242 LEU ILE VAL ASP GLY HIS HIS ARG TRP ALA GLY LEU GLN SEQRES 7 A 242 LYS LEU GLY ALA LYS ARG ALA PRO SER VAL ILE LEU ASP SEQRES 8 A 242 TYR PHE SER ASP ASP VAL LYS VAL TYR THR TRP TYR PRO SEQRES 9 A 242 ALA PHE LYS GLY ASP LEU ASN GLU VAL VAL GLU ARG LEU SEQRES 10 A 242 LYS LYS GLU GLY LEU GLU VAL ILE GLU ASP PRO GLU ALA SEQRES 11 A 242 GLU GLU LYS ALA GLU ARG GLY GLU ILE ALA PHE ALA LEU SEQRES 12 A 242 VAL GLY GLU LYS SER PHE ALA ILE PRO GLY GLY LEU GLU SEQRES 13 A 242 GLU GLN LYS LYS VAL SER LYS VAL LEU ASP GLU MET SER SEQRES 14 A 242 VAL GLU GLY LYS ILE GLU LEU ILE TYR TYR GLY LEU LYS SEQRES 15 A 242 GLU ASP ALA ARG GLU ASP MET ALA LYS GLY GLU ILE ASP SEQRES 16 A 242 TYR VAL PHE ILE ARG LYS ALA PRO THR LYS GLU GLU VAL SEQRES 17 A 242 MET GLU LEU VAL LYS ARG GLY GLU VAL TYR SER PRO LYS SEQRES 18 A 242 THR THR ARG HIS VAL LEU PRO PHE ASN PRO ASP LYS ILE SEQRES 19 A 242 ASP VAL LYS LEU GLU GLU LEU PHE HET AMP A 301 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *123(H2 O) HELIX 1 AA1 VAL A 33 GLY A 48 1 16 HELIX 2 AA2 GLY A 70 LEU A 80 1 11 HELIX 3 AA3 ASP A 109 GLU A 120 1 12 HELIX 4 AA4 GLU A 129 GLY A 137 1 9 HELIX 5 AA5 GLY A 154 GLU A 171 1 18 HELIX 6 AA6 LEU A 181 GLY A 192 1 12 HELIX 7 AA7 THR A 204 ARG A 214 1 11 HELIX 8 AA8 GLU A 239 PHE A 242 5 4 SHEET 1 AA1 7 VAL A 3 LYS A 5 0 SHEET 2 AA1 7 ILE A 174 TYR A 179 1 O TYR A 178 N VAL A 3 SHEET 3 AA1 7 TYR A 103 GLY A 108 -1 N TYR A 103 O TYR A 179 SHEET 4 AA1 7 TYR A 196 ILE A 199 -1 O PHE A 198 N PRO A 104 SHEET 5 AA1 7 PHE A 141 VAL A 144 -1 N ALA A 142 O ILE A 199 SHEET 6 AA1 7 SER A 148 ILE A 151 -1 O PHE A 149 N LEU A 143 SHEET 7 AA1 7 ILE A 125 GLU A 126 -1 N ILE A 125 O ALA A 150 SHEET 1 AA2 2 THR A 13 LYS A 14 0 SHEET 2 AA2 2 ASN A 230 PRO A 231 1 O ASN A 230 N LYS A 14 SHEET 1 AA3 5 VAL A 19 GLU A 22 0 SHEET 2 AA3 5 ARG A 84 ILE A 89 -1 O SER A 87 N VAL A 19 SHEET 3 AA3 5 MET A 54 LYS A 58 1 N LEU A 56 O VAL A 88 SHEET 4 AA3 5 TYR A 65 ASP A 69 -1 O LEU A 66 N ALA A 57 SHEET 5 AA3 5 MET A 26 LYS A 27 1 N LYS A 27 O TYR A 65 SHEET 1 AA4 2 ILE A 49 PHE A 50 0 SHEET 2 AA4 2 VAL A 236 LYS A 237 -1 O VAL A 236 N PHE A 50 SHEET 1 AA5 2 LYS A 98 TYR A 100 0 SHEET 2 AA5 2 ARG A 224 VAL A 226 -1 O ARG A 224 N TYR A 100 SITE 1 AC1 15 ASP A 17 PHE A 40 SER A 43 VAL A 44 SITE 2 AC1 15 ILE A 49 PHE A 50 TRP A 51 LYS A 52 SITE 3 AC1 15 GLY A 70 HIS A 71 HIS A 72 ARG A 73 SITE 4 AC1 15 HOH A 417 HOH A 472 HOH A 478 CRYST1 39.903 70.032 88.381 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011315 0.00000