HEADER TRANSFERASE 20-JAN-17 5X0G TITLE FREE SERINE KINASE (E30A MUTANT) IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FREE SERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK0378; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOCOCCUS KODAKARENSIS, CYSTEINE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGATA,M.FUJIHASHI,K.MIKI REVDAT 3 22-NOV-23 5X0G 1 REMARK REVDAT 2 05-JUL-17 5X0G 1 JRNL REVDAT 1 12-APR-17 5X0G 0 JRNL AUTH R.NAGATA,M.FUJIHASHI,H.KAWAMURA,T.SATO,T.FUJITA,H.ATOMI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURAL STUDY ON THE REACTION MECHANISM OF A FREE SERINE JRNL TITL 2 KINASE INVOLVED IN CYSTEINE BIOSYNTHESIS JRNL REF ACS CHEM. BIOL. V. 12 1514 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28358477 JRNL DOI 10.1021/ACSCHEMBIO.7B00064 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1755 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1878 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1653 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2564 ; 1.399 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3822 ; 0.859 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;28.435 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;12.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.684 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2105 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 964 ; 0.054 ; 0.493 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 963 ; 0.054 ; 0.494 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1205 ; 0.097 ; 0.740 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1206 ; 0.097 ; 0.740 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 914 ; 0.152 ; 0.603 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 915 ; 0.152 ; 0.606 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1360 ; 0.248 ; 0.905 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2000 ; 3.482 ; 4.749 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1978 ; 3.426 ; 4.521 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6978 28.2198 12.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.7096 REMARK 3 T33: 0.5624 T12: 0.1179 REMARK 3 T13: -0.0838 T23: 0.0947 REMARK 3 L TENSOR REMARK 3 L11: 9.0705 L22: 0.1713 REMARK 3 L33: 9.3360 L12: -0.1780 REMARK 3 L13: -9.1870 L23: 0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.5357 S12: 0.3146 S13: 0.6941 REMARK 3 S21: 0.1772 S22: 0.2005 S23: 0.0914 REMARK 3 S31: -0.6037 S32: -0.4488 S33: -0.7361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0497 12.4822 8.6283 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0132 REMARK 3 T33: 0.3423 T12: -0.0212 REMARK 3 T13: -0.0230 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.3286 L22: 2.5868 REMARK 3 L33: 2.4703 L12: -1.0638 REMARK 3 L13: 0.9067 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.1231 S13: -0.1350 REMARK 3 S21: 0.0189 S22: 0.0689 S23: -0.0541 REMARK 3 S31: 0.3345 S32: -0.1396 S33: -0.0672 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9066 13.5985 8.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0267 REMARK 3 T33: 0.3399 T12: 0.0023 REMARK 3 T13: 0.0055 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.7631 L22: 2.4083 REMARK 3 L33: 2.0636 L12: 1.2794 REMARK 3 L13: 0.8740 L23: 0.5901 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.1422 S13: 0.0410 REMARK 3 S21: 0.1375 S22: 0.0031 S23: 0.0506 REMARK 3 S31: -0.0241 S32: 0.0275 S33: 0.0035 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3960 19.4270 35.6509 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.5421 REMARK 3 T33: 0.3628 T12: 0.0596 REMARK 3 T13: -0.0054 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.6562 L22: 3.3093 REMARK 3 L33: 7.1032 L12: -0.7205 REMARK 3 L13: -2.8490 L23: 0.7630 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.3082 S13: -0.0943 REMARK 3 S21: 0.5861 S22: -0.2564 S23: 0.1500 REMARK 3 S31: 0.0502 S32: -0.8235 S33: 0.2945 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0807 15.8640 25.7242 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 1.1366 REMARK 3 T33: 0.7568 T12: -0.1656 REMARK 3 T13: -0.1628 T23: -0.1384 REMARK 3 L TENSOR REMARK 3 L11: 5.2857 L22: 1.3351 REMARK 3 L33: 5.4806 L12: -2.3900 REMARK 3 L13: -0.6163 L23: 1.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.1553 S13: -0.5326 REMARK 3 S21: -0.0984 S22: -0.3453 S23: 0.5321 REMARK 3 S31: 0.7103 S32: -2.3667 S33: 0.3711 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8282 19.9390 17.1008 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1630 REMARK 3 T33: 0.3959 T12: 0.0681 REMARK 3 T13: 0.0213 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.3680 L22: 0.8845 REMARK 3 L33: 3.4389 L12: -0.1668 REMARK 3 L13: 0.5389 L23: 0.0567 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: -0.3858 S13: 0.0845 REMARK 3 S21: 0.2252 S22: 0.0950 S23: 0.0871 REMARK 3 S31: -0.4220 S32: -0.3890 S33: 0.0332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5X0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POPSO, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 19.88300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.87250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.88300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.87250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 VAL A 6 CG1 CG2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 TYR A 9 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 15 NZ REMARK 470 LYS A 25 CD CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 LYS A 79 CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 VAL A 99 CG1 CG2 REMARK 470 PHE A 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 VAL A 113 CG1 CG2 REMARK 470 VAL A 114 CG1 CG2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LEU A 122 CD1 CD2 REMARK 470 ILE A 125 CG1 CG2 CD1 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LYS A 133 CE NZ REMARK 470 VAL A 144 CG1 CG2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 SER A 148 OG REMARK 470 PHE A 149 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 156 CD OE1 OE2 REMARK 470 LYS A 160 NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 SER A 169 OG REMARK 470 VAL A 170 CG1 CG2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS A 173 CD CE NZ REMARK 470 ILE A 174 CG1 CG2 CD1 REMARK 470 ILE A 177 CG1 CG2 CD1 REMARK 470 LEU A 181 CD1 CD2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 ARG A 186 NH1 NH2 REMARK 470 MET A 189 CG SD CE REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ILE A 194 CG1 CG2 CD1 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 TYR A 196 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 197 CG1 CG2 REMARK 470 LYS A 201 CE NZ REMARK 470 ARG A 214 CZ NH1 NH2 REMARK 470 GLU A 216 OE1 OE2 REMARK 470 LYS A 221 CE NZ REMARK 470 VAL A 226 CG1 CG2 REMARK 470 GLU A 239 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 46.58 -83.40 REMARK 500 TYR A 100 -169.90 -110.09 REMARK 500 ASP A 127 113.49 -164.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 7WF A 303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7WF A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0B RELATED DB: PDB REMARK 900 RELATED ID: 5X0E RELATED DB: PDB REMARK 900 RELATED ID: 5X0F RELATED DB: PDB REMARK 900 RELATED ID: 5X0J RELATED DB: PDB REMARK 900 RELATED ID: 5X0K RELATED DB: PDB DBREF 5X0G A 1 242 UNP Q5JD03 Q5JD03_THEKO 1 242 SEQADV 5X0G ALA A 30 UNP Q5JD03 GLU 30 ENGINEERED MUTATION SEQRES 1 A 242 MET GLY VAL GLU LYS VAL PRO LYS TYR ASP ILE PRO THR SEQRES 2 A 242 LYS LYS VAL ASP TYR VAL PHE ILE GLU LEU ASP LYS MET SEQRES 3 A 242 LYS PRO HIS ALA GLN LEU VAL GLN LYS GLU LEU GLU ALA SEQRES 4 A 242 PHE ILE GLU SER VAL THR GLY SER GLY ILE PHE TRP LYS SEQRES 5 A 242 PRO MET LEU LEU ALA LYS VAL PRO GLY GLU ASP MET TYR SEQRES 6 A 242 LEU ILE VAL ASP GLY HIS HIS ARG TRP ALA GLY LEU GLN SEQRES 7 A 242 LYS LEU GLY ALA LYS ARG ALA PRO SER VAL ILE LEU ASP SEQRES 8 A 242 TYR PHE SER ASP ASP VAL LYS VAL TYR THR TRP TYR PRO SEQRES 9 A 242 ALA PHE LYS GLY ASP LEU ASN GLU VAL VAL GLU ARG LEU SEQRES 10 A 242 LYS LYS GLU GLY LEU GLU VAL ILE GLU ASP PRO GLU ALA SEQRES 11 A 242 GLU GLU LYS ALA GLU ARG GLY GLU ILE ALA PHE ALA LEU SEQRES 12 A 242 VAL GLY GLU LYS SER PHE ALA ILE PRO GLY GLY LEU GLU SEQRES 13 A 242 GLU GLN LYS LYS VAL SER LYS VAL LEU ASP GLU MET SER SEQRES 14 A 242 VAL GLU GLY LYS ILE GLU LEU ILE TYR TYR GLY LEU LYS SEQRES 15 A 242 GLU ASP ALA ARG GLU ASP MET ALA LYS GLY GLU ILE ASP SEQRES 16 A 242 TYR VAL PHE ILE ARG LYS ALA PRO THR LYS GLU GLU VAL SEQRES 17 A 242 MET GLU LEU VAL LYS ARG GLY GLU VAL TYR SER PRO LYS SEQRES 18 A 242 THR THR ARG HIS VAL LEU PRO PHE ASN PRO ASP LYS ILE SEQRES 19 A 242 ASP VAL LYS LEU GLU GLU LEU PHE HET AMP A 301 23 HET ADP A 302 27 HET 7WF A 303 14 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 7WF 2-HYDROXY-3-[4-(2-HYDROXY-3-SULFOPROPYL)PIPERAZIN-1- HETNAM 2 7WF YL]PROPANE-1-SULFONIC ACID HETSYN 7WF POPSO FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 7WF C10 H22 N2 O8 S2 FORMUL 5 HOH *68(H2 O) HELIX 1 AA1 VAL A 33 GLY A 48 1 16 HELIX 2 AA2 GLY A 70 GLY A 81 1 12 HELIX 3 AA3 ASP A 109 GLU A 120 1 12 HELIX 4 AA4 GLU A 129 GLY A 137 1 9 HELIX 5 AA5 GLY A 154 GLU A 171 1 18 HELIX 6 AA6 LEU A 181 GLY A 192 1 12 HELIX 7 AA7 THR A 204 ARG A 214 1 11 HELIX 8 AA8 GLU A 239 PHE A 242 5 4 SHEET 1 AA1 7 GLU A 4 LYS A 5 0 SHEET 2 AA1 7 ILE A 174 TYR A 179 1 O TYR A 178 N LYS A 5 SHEET 3 AA1 7 TYR A 103 GLY A 108 -1 N ALA A 105 O ILE A 177 SHEET 4 AA1 7 TYR A 196 ILE A 199 -1 O PHE A 198 N PRO A 104 SHEET 5 AA1 7 PHE A 141 VAL A 144 -1 N VAL A 144 O VAL A 197 SHEET 6 AA1 7 SER A 148 ILE A 151 -1 O PHE A 149 N LEU A 143 SHEET 7 AA1 7 ILE A 125 GLU A 126 -1 N ILE A 125 O ALA A 150 SHEET 1 AA2 2 THR A 13 LYS A 14 0 SHEET 2 AA2 2 ASN A 230 PRO A 231 1 O ASN A 230 N LYS A 14 SHEET 1 AA3 5 VAL A 19 GLU A 22 0 SHEET 2 AA3 5 ARG A 84 ILE A 89 -1 O SER A 87 N VAL A 19 SHEET 3 AA3 5 MET A 54 LYS A 58 1 N MET A 54 O VAL A 88 SHEET 4 AA3 5 TYR A 65 ASP A 69 -1 O LEU A 66 N ALA A 57 SHEET 5 AA3 5 MET A 26 LYS A 27 1 N LYS A 27 O TYR A 65 SHEET 1 AA4 2 ILE A 49 PHE A 50 0 SHEET 2 AA4 2 VAL A 236 LYS A 237 -1 O VAL A 236 N PHE A 50 SHEET 1 AA5 2 LYS A 98 TYR A 100 0 SHEET 2 AA5 2 ARG A 224 VAL A 226 -1 O ARG A 224 N TYR A 100 SITE 1 AC1 15 ASP A 17 SER A 43 VAL A 44 ILE A 49 SITE 2 AC1 15 PHE A 50 TRP A 51 LYS A 52 ASP A 69 SITE 3 AC1 15 GLY A 70 HIS A 71 HIS A 72 ARG A 73 SITE 4 AC1 15 ADP A 302 7WF A 303 HOH A 413 SITE 1 AC2 18 ASP A 17 PHE A 40 SER A 43 VAL A 44 SITE 2 AC2 18 ILE A 49 PHE A 50 TRP A 51 LYS A 52 SITE 3 AC2 18 ASP A 69 GLY A 70 HIS A 71 HIS A 72 SITE 4 AC2 18 ARG A 73 AMP A 301 7WF A 303 HOH A 413 SITE 5 AC2 18 HOH A 421 HOH A 424 SITE 1 AC3 8 ASP A 17 TYR A 18 VAL A 19 PHE A 20 SITE 2 AC3 8 TRP A 51 LYS A 52 AMP A 301 ADP A 302 CRYST1 39.766 69.745 87.159 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011473 0.00000