HEADER DNA BINDING PROTEIN 23-JAN-17 5X0Q TITLE OXYR2 E204G VARIANT (CL-BOUND) FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 86-301; COMPND 5 SYNONYM: OXYR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: MO6-24/O; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYSR-TYPE TRANSCRIPTION REGULATOR, LTTR, OXYR, H2O2, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JO,N.-C.HA REVDAT 3 22-NOV-23 5X0Q 1 REMARK REVDAT 2 10-MAY-17 5X0Q 1 JRNL REVDAT 1 15-MAR-17 5X0Q 0 JRNL AUTH I.JO,D.KIM,Y.-J.BANG,J.AHN,S.H.CHOI,N.-C.HA JRNL TITL THE HYDROGEN PEROXIDE HYPERSENSITIVITY OF OXYR2 IN VIBRIO JRNL TITL 2 VULNIFICUS DEPENDS ON CONFORMATIONAL CONSTRAINTS JRNL REF J. BIOL. CHEM. V. 292 7223 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28264933 JRNL DOI 10.1074/JBC.M116.743765 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 64561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8692 - 4.3928 1.00 3037 175 0.1481 0.1585 REMARK 3 2 4.3928 - 3.4929 1.00 2941 157 0.1306 0.1646 REMARK 3 3 3.4929 - 3.0532 1.00 2919 148 0.1472 0.1891 REMARK 3 4 3.0532 - 2.7748 1.00 2879 158 0.1569 0.1936 REMARK 3 5 2.7748 - 2.5764 1.00 2914 139 0.1558 0.1787 REMARK 3 6 2.5764 - 2.4248 1.00 2879 161 0.1530 0.1890 REMARK 3 7 2.4248 - 2.3035 1.00 2867 137 0.1461 0.1871 REMARK 3 8 2.3035 - 2.2034 1.00 2879 162 0.1390 0.1788 REMARK 3 9 2.2034 - 2.1186 1.00 2856 167 0.1445 0.1690 REMARK 3 10 2.1186 - 2.0456 1.00 2872 136 0.1455 0.1778 REMARK 3 11 2.0456 - 1.9817 1.00 2853 152 0.1465 0.1801 REMARK 3 12 1.9817 - 1.9251 1.00 2867 144 0.1475 0.1855 REMARK 3 13 1.9251 - 1.8745 0.99 2826 142 0.1606 0.2020 REMARK 3 14 1.8745 - 1.8288 0.99 2821 140 0.1692 0.2322 REMARK 3 15 1.8288 - 1.7872 0.99 2834 160 0.1794 0.2303 REMARK 3 16 1.7872 - 1.7492 0.97 2761 141 0.1872 0.2193 REMARK 3 17 1.7492 - 1.7142 0.95 2690 148 0.1810 0.1844 REMARK 3 18 1.7142 - 1.6819 0.91 2595 126 0.1905 0.2211 REMARK 3 19 1.6819 - 1.6519 0.86 2422 144 0.1874 0.2437 REMARK 3 20 1.6519 - 1.6239 0.77 2205 113 0.2017 0.2238 REMARK 3 21 1.6239 - 1.5977 0.70 2005 86 0.2097 0.2293 REMARK 3 22 1.5977 - 1.5731 0.64 1831 95 0.2022 0.2407 REMARK 3 23 1.5731 - 1.5500 0.56 1609 68 0.1998 0.2499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3469 REMARK 3 ANGLE : 1.209 4729 REMARK 3 CHIRALITY : 0.078 566 REMARK 3 PLANARITY : 0.008 615 REMARK 3 DIHEDRAL : 4.790 2930 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3257 -6.3244 16.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.1727 REMARK 3 T33: 0.1327 T12: -0.0012 REMARK 3 T13: -0.0039 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.4548 L22: 0.6245 REMARK 3 L33: 0.2480 L12: -1.0614 REMARK 3 L13: 0.6160 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.5430 S13: 0.1943 REMARK 3 S21: -0.0100 S22: -0.0697 S23: -0.2286 REMARK 3 S31: 0.0267 S32: 0.2420 S33: 0.0413 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7533 -5.9274 13.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0505 REMARK 3 T33: 0.0325 T12: -0.0102 REMARK 3 T13: -0.0075 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0096 L22: 0.7759 REMARK 3 L33: 0.8913 L12: 0.1707 REMARK 3 L13: -0.3574 L23: -0.1028 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.0150 S13: -0.0290 REMARK 3 S21: -0.0821 S22: 0.0151 S23: -0.0180 REMARK 3 S31: 0.0143 S32: -0.0258 S33: 0.0298 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7755 -6.7324 13.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.1735 REMARK 3 T33: 0.0788 T12: -0.0002 REMARK 3 T13: -0.0396 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.0484 L22: 1.2497 REMARK 3 L33: 1.2931 L12: -0.3913 REMARK 3 L13: -0.0649 L23: -0.4407 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.2890 S13: -0.0325 REMARK 3 S21: -0.1512 S22: -0.0192 S23: 0.1889 REMARK 3 S31: -0.0889 S32: -0.2830 S33: 0.0120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8602 -10.4189 8.8891 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1099 REMARK 3 T33: 0.0396 T12: -0.0251 REMARK 3 T13: -0.0148 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7650 L22: 1.2649 REMARK 3 L33: 0.9056 L12: 0.2050 REMARK 3 L13: -0.6217 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.1826 S12: 0.2050 S13: -0.1345 REMARK 3 S21: -0.2688 S22: 0.0621 S23: -0.1383 REMARK 3 S31: 0.1457 S32: -0.0750 S33: 0.0134 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3383 -41.8194 17.6697 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.1933 REMARK 3 T33: 0.1785 T12: -0.0159 REMARK 3 T13: 0.0130 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.0455 L22: 0.7323 REMARK 3 L33: -0.0007 L12: -1.6287 REMARK 3 L13: -0.2392 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.3834 S13: -0.4446 REMARK 3 S21: -0.0007 S22: -0.1154 S23: 0.2585 REMARK 3 S31: -0.0289 S32: -0.2171 S33: -0.0458 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6819 -41.7122 14.3577 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0600 REMARK 3 T33: 0.0501 T12: -0.0011 REMARK 3 T13: -0.0027 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.3953 L22: 0.9560 REMARK 3 L33: 0.6763 L12: 0.4649 REMARK 3 L13: 0.2015 L23: -0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0541 S13: 0.0324 REMARK 3 S21: -0.1180 S22: -0.0033 S23: 0.0500 REMARK 3 S31: 0.0229 S32: -0.0096 S33: 0.0096 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2120 -44.0268 9.7167 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.1398 REMARK 3 T33: 0.1376 T12: 0.0340 REMARK 3 T13: 0.0767 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.0651 L22: 0.3133 REMARK 3 L33: 1.9518 L12: -0.1926 REMARK 3 L13: -0.2967 L23: 0.1557 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.2690 S13: -0.0395 REMARK 3 S21: -0.2866 S22: -0.0576 S23: -0.2027 REMARK 3 S31: 0.2330 S32: 0.1672 S33: 0.0633 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1879 -37.3765 12.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0851 REMARK 3 T33: 0.0520 T12: 0.0007 REMARK 3 T13: 0.0165 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.9092 L22: 0.9128 REMARK 3 L33: 0.3301 L12: 0.4477 REMARK 3 L13: 0.4601 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.1618 S13: 0.1033 REMARK 3 S21: -0.1342 S22: 0.0327 S23: 0.0731 REMARK 3 S31: 0.0139 S32: 0.0396 S33: 0.0261 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00820 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5B7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE (PH 6.5), 14% REMARK 280 PEG 3350, 2MM TCEP (TRIS(2CARBOXYETHYL)PHOSPHINE), 5MM DTT, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.56300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.56300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.60650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.11600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.60650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.11600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.56300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.60650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.11600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.56300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.60650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.11600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.56300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.56300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE1 GLU A 163 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 LEU A 90 REMARK 465 CYS A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 GLY B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 CYS B 91 REMARK 465 GLN B 92 REMARK 465 GLY B 93 REMARK 465 ASP B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 209 O HOH A 501 1.92 REMARK 500 O HOH B 630 O HOH B 767 2.01 REMARK 500 O HOH A 535 O HOH A 687 2.05 REMARK 500 NZ LYS A 220 O HOH A 502 2.07 REMARK 500 O HOH B 801 O HOH B 802 2.08 REMARK 500 O HOH A 530 O HOH A 734 2.13 REMARK 500 O HOH A 570 O HOH A 762 2.14 REMARK 500 O HOH B 597 O HOH B 643 2.16 REMARK 500 N GLY A 83 O HOH A 503 2.16 REMARK 500 O HOH B 589 O HOH B 752 2.19 REMARK 500 O HOH B 649 O HOH B 767 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 163 OE1 GLU A 163 4555 1.29 REMARK 500 O HOH A 707 O HOH B 756 3555 2.07 REMARK 500 O HOH A 503 O HOH A 579 3655 2.10 REMARK 500 O HOH A 621 O HOH A 680 1455 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 162 CG - SD - CE ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU A 163 OE1 - CD - OE2 ANGL. DEV. = 17.2 DEGREES REMARK 500 GLU A 163 CG - CD - OE1 ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 96 32.51 -90.80 REMARK 500 PHE A 111 -71.47 -105.71 REMARK 500 ALA A 183 6.26 -64.70 REMARK 500 GLU A 202 154.09 -49.79 REMARK 500 PHE B 111 -73.25 -103.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 817 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0V RELATED DB: PDB REMARK 900 RELATED ID: 5B70 RELATED DB: PDB REMARK 900 RELATED ID: 5B7D RELATED DB: PDB DBREF1 5X0Q A 86 301 UNP A0A087I947_VIBVL DBREF2 5X0Q A A0A087I947 86 301 DBREF1 5X0Q B 86 301 UNP A0A087I947_VIBVL DBREF2 5X0Q B A0A087I947 86 301 SEQADV 5X0Q GLY A 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q ALA A 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q MET A 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q GLY A 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQADV 5X0Q GLY B 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q ALA B 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q MET B 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0Q GLY B 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQRES 1 A 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 A 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 A 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 A 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 A 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 A 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 A 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 A 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 A 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 A 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 A 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 A 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 A 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 A 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 A 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 A 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 A 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 B 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 B 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 B 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 B 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 B 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 B 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 B 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 B 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 B 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 B 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 B 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 B 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 B 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 B 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 B 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 B 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 B 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU HET CL A 401 1 HET CIT B 401 13 HET CL B 402 1 HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID FORMUL 3 CL 2(CL 1-) FORMUL 4 CIT C6 H8 O7 FORMUL 6 HOH *606(H2 O) HELIX 1 AA1 ILE A 108 PHE A 124 1 17 HELIX 2 AA2 THR A 135 HIS A 145 1 11 HELIX 3 AA3 HIS A 179 ALA A 181 5 3 HELIX 4 AA4 LYS A 189 LEU A 193 5 5 HELIX 5 AA5 CYS A 206 CYS A 215 1 10 HELIX 6 AA6 ASP A 219 ILE A 223 5 5 HELIX 7 AA7 SER A 230 ASN A 240 1 11 HELIX 8 AA8 GLN A 249 HIS A 254 1 6 HELIX 9 AA9 ARG A 286 LEU A 300 1 15 HELIX 10 AB1 ILE B 108 PHE B 124 1 17 HELIX 11 AB2 THR B 135 HIS B 145 1 11 HELIX 12 AB3 HIS B 179 ILE B 184 5 6 HELIX 13 AB4 LYS B 189 LEU B 193 5 5 HELIX 14 AB5 HIS B 205 CYS B 215 1 11 HELIX 15 AB6 ASP B 219 ILE B 223 5 5 HELIX 16 AB7 SER B 230 ASN B 240 1 11 HELIX 17 AB8 GLN B 249 HIS B 254 1 6 HELIX 18 AB9 ARG B 286 LEU B 300 1 15 SHEET 1 AA1 6 LEU A 127 GLU A 133 0 SHEET 2 AA1 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA1 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA1 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA1 6 GLU A 163 SER A 177 -1 N GLU A 163 O TRP A 280 SHEET 6 AA1 6 THR A 245 PRO A 248 -1 O ILE A 247 N LYS A 173 SHEET 1 AA2 6 LEU A 127 GLU A 133 0 SHEET 2 AA2 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA2 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA2 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA2 6 GLU A 163 SER A 177 -1 N GLU A 163 O TRP A 280 SHEET 6 AA2 6 LEU A 262 ILE A 265 -1 O ILE A 265 N MET A 174 SHEET 1 AA3 6 LEU B 127 GLU B 133 0 SHEET 2 AA3 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA3 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA3 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA3 6 GLU B 163 SER B 177 -1 N VAL B 167 O ILE B 276 SHEET 6 AA3 6 THR B 245 PRO B 248 -1 O ILE B 247 N LYS B 173 SHEET 1 AA4 6 LEU B 127 GLU B 133 0 SHEET 2 AA4 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA4 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA4 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA4 6 GLU B 163 SER B 177 -1 N VAL B 167 O ILE B 276 SHEET 6 AA4 6 LEU B 262 ILE B 265 -1 O VAL B 263 N ILE B 176 CISPEP 1 LEU A 155 PRO A 156 0 6.37 CISPEP 2 VAL A 186 PRO A 187 0 2.06 CISPEP 3 LEU B 155 PRO B 156 0 3.10 CISPEP 4 VAL B 186 PRO B 187 0 -1.72 SITE 1 AC1 4 THR A 136 GLY A 204 CYS A 206 HOH A 667 SITE 1 AC2 12 ARG A 144 HIS A 145 ARG B 281 SER B 284 SITE 2 AC2 12 SER B 285 HOH B 516 HOH B 520 HOH B 542 SITE 3 AC2 12 HOH B 545 HOH B 587 HOH B 597 HOH B 604 SITE 1 AC3 5 ILE B 105 THR B 136 GLY B 204 CYS B 206 SITE 2 AC3 5 HOH B 568 CRYST1 71.213 138.232 97.126 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010296 0.00000