HEADER DNA BINDING PROTEIN 23-JAN-17 5X0V TITLE REDUCED FORM OF REGULATORY DOMAIN OF OXYR2 FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 86-301; COMPND 5 SYNONYM: OXYR2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: MO6-24/O; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYSR-TYPE TRANSCRIPTION REGULATOR, LTTR, OXYR, H2O2, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JO,N.-C.HA REVDAT 3 20-MAR-24 5X0V 1 REMARK REVDAT 2 10-MAY-17 5X0V 1 JRNL REVDAT 1 15-MAR-17 5X0V 0 JRNL AUTH I.JO,D.KIM,Y.-J.BANG,J.AHN,S.H.CHOI,N.-C.HA JRNL TITL THE HYDROGEN PEROXIDE HYPERSENSITIVITY OF OXYR2 IN VIBRIO JRNL TITL 2 VULNIFICUS DEPENDS ON CONFORMATIONAL CONSTRAINTS JRNL REF J. BIOL. CHEM. V. 292 7223 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28264933 JRNL DOI 10.1074/JBC.M116.743765 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 55578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7591 - 4.3399 1.00 3150 173 0.1469 0.1860 REMARK 3 2 4.3399 - 3.4450 1.00 3018 202 0.1380 0.1446 REMARK 3 3 3.4450 - 3.0096 1.00 3022 153 0.1546 0.1828 REMARK 3 4 3.0096 - 2.7345 1.00 3003 163 0.1592 0.1720 REMARK 3 5 2.7345 - 2.5385 1.00 3020 146 0.1583 0.2242 REMARK 3 6 2.5385 - 2.3888 0.99 2946 171 0.1510 0.2037 REMARK 3 7 2.3888 - 2.2692 0.99 2953 155 0.1494 0.1919 REMARK 3 8 2.2692 - 2.1704 0.99 2965 159 0.1452 0.1820 REMARK 3 9 2.1704 - 2.0868 0.99 2952 163 0.1469 0.1900 REMARK 3 10 2.0868 - 2.0148 0.99 2933 167 0.1553 0.1979 REMARK 3 11 2.0148 - 1.9518 0.99 2894 183 0.1608 0.2059 REMARK 3 12 1.9518 - 1.8960 0.98 2908 141 0.1796 0.2150 REMARK 3 13 1.8960 - 1.8461 0.97 2853 155 0.1820 0.2366 REMARK 3 14 1.8461 - 1.8011 0.95 2802 134 0.1978 0.2158 REMARK 3 15 1.8011 - 1.7601 0.88 2618 139 0.1970 0.2386 REMARK 3 16 1.7601 - 1.7227 0.79 2376 117 0.1995 0.2245 REMARK 3 17 1.7227 - 1.6882 0.69 2019 117 0.2016 0.2380 REMARK 3 18 1.6882 - 1.6564 0.58 1696 95 0.2026 0.2656 REMARK 3 19 1.6564 - 1.6268 0.49 1451 73 0.2136 0.2118 REMARK 3 20 1.6268 - 1.5992 0.39 1130 63 0.2023 0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3459 REMARK 3 ANGLE : 1.310 4717 REMARK 3 CHIRALITY : 0.095 562 REMARK 3 PLANARITY : 0.008 620 REMARK 3 DIHEDRAL : 5.792 2941 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2746 -6.4480 16.6062 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1830 REMARK 3 T33: 0.1865 T12: 0.0009 REMARK 3 T13: -0.0146 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.3814 L22: 0.7747 REMARK 3 L33: 0.3384 L12: -1.6231 REMARK 3 L13: 1.0652 L23: -0.5121 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: 0.5380 S13: -0.0559 REMARK 3 S21: -0.0691 S22: -0.1572 S23: -0.2850 REMARK 3 S31: 0.0618 S32: 0.2847 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1774 -6.1915 13.2839 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0491 REMARK 3 T33: 0.0484 T12: -0.0083 REMARK 3 T13: -0.0086 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.0313 L22: 0.9226 REMARK 3 L33: 1.0331 L12: 0.2710 REMARK 3 L13: -0.2252 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.0306 S13: -0.0436 REMARK 3 S21: -0.1114 S22: 0.0191 S23: -0.0329 REMARK 3 S31: 0.0039 S32: -0.0230 S33: 0.0185 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1168 -4.9224 11.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.2309 REMARK 3 T33: 0.1529 T12: 0.0090 REMARK 3 T13: -0.0638 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6354 L22: 0.6176 REMARK 3 L33: 1.5361 L12: -0.5818 REMARK 3 L13: 0.0281 L23: -0.3830 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.3064 S13: -0.1172 REMARK 3 S21: -0.1717 S22: -0.0163 S23: 0.2722 REMARK 3 S31: -0.0505 S32: -0.4022 S33: 0.0875 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1172 -10.8831 12.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.0821 REMARK 3 T33: 0.0579 T12: -0.0171 REMARK 3 T13: -0.0164 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.4598 L22: 0.8022 REMARK 3 L33: 0.6963 L12: 0.1557 REMARK 3 L13: -0.1332 L23: -0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: 0.1894 S13: -0.0926 REMARK 3 S21: -0.1401 S22: 0.0320 S23: -0.0242 REMARK 3 S31: 0.0763 S32: -0.0869 S33: 0.0282 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3974 -41.6140 17.6302 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1733 REMARK 3 T33: 0.2391 T12: -0.0225 REMARK 3 T13: 0.0168 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 6.4101 L22: 0.8132 REMARK 3 L33: 0.0880 L12: -2.2864 REMARK 3 L13: -0.7547 L23: 0.2683 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.6318 S13: -0.1126 REMARK 3 S21: 0.0566 S22: -0.1619 S23: 0.2953 REMARK 3 S31: 0.0301 S32: -0.2265 S33: 0.0213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7981 -40.8479 18.2603 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.0552 REMARK 3 T33: 0.0891 T12: -0.0183 REMARK 3 T13: -0.0114 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6125 L22: 1.7479 REMARK 3 L33: 1.3918 L12: -0.1744 REMARK 3 L13: -0.2603 L23: 0.6677 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0395 S13: 0.1668 REMARK 3 S21: -0.1513 S22: -0.0360 S23: 0.1791 REMARK 3 S31: -0.0757 S32: -0.0919 S33: 0.0189 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2776 -42.2988 10.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.0825 REMARK 3 T33: 0.0612 T12: 0.0029 REMARK 3 T13: 0.0083 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.7750 L22: 1.9151 REMARK 3 L33: 0.6127 L12: 1.5241 REMARK 3 L13: 0.2077 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.2071 S13: -0.0551 REMARK 3 S21: -0.2134 S22: 0.0251 S23: -0.0245 REMARK 3 S31: 0.0458 S32: 0.0575 S33: 0.0073 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2643 -43.1052 9.6480 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.2047 REMARK 3 T33: 0.1684 T12: 0.0248 REMARK 3 T13: 0.1113 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9484 L22: 0.0518 REMARK 3 L33: 1.5722 L12: 0.1854 REMARK 3 L13: -0.2342 L23: -0.1792 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.3372 S13: -0.0207 REMARK 3 S21: -0.3153 S22: -0.0283 S23: -0.2471 REMARK 3 S31: 0.1846 S32: 0.2432 S33: 0.1242 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8384 -37.1047 12.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.1003 REMARK 3 T33: 0.0871 T12: -0.0027 REMARK 3 T13: 0.0136 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.6185 L22: 1.0046 REMARK 3 L33: 0.3411 L12: 0.3763 REMARK 3 L13: 0.2306 L23: -0.1167 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.2283 S13: 0.1879 REMARK 3 S21: -0.1730 S22: 0.0262 S23: 0.0905 REMARK 3 S31: 0.0185 S32: 0.0468 S33: 0.0234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE (PH 6.5), 14% REMARK 280 (W/V) PEG 3350, 2MM TCEP (TRIS(2-CARBOXYETHYL)PHOSPHINE), 5MM REMARK 280 DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.73650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.73650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.10200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.17400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.10200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.17400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.73650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.10200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.17400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.73650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.10200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.17400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.73650 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.73650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 LEU A 90 REMARK 465 CYS A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 GLY B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 CYS B 91 REMARK 465 GLN B 92 REMARK 465 GLY B 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 633 O HOH B 685 2.09 REMARK 500 O HOH B 703 O HOH B 707 2.11 REMARK 500 O HOH B 561 O HOH B 601 2.14 REMARK 500 OG SER A 177 O HOH A 501 2.14 REMARK 500 O HOH B 709 O HOH B 710 2.16 REMARK 500 O HOH A 560 O HOH A 595 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 163 OE2 GLU A 163 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 162 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 111 -67.21 -106.12 REMARK 500 ILE A 159 41.29 -140.04 REMARK 500 ALA A 183 24.30 -73.69 REMARK 500 PHE B 111 -71.96 -103.29 REMARK 500 ASP B 160 -117.67 46.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 719 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0Q RELATED DB: PDB REMARK 900 RELATED ID: 5B70 RELATED DB: PDB REMARK 900 RELATED ID: 5B7D RELATED DB: PDB DBREF1 5X0V A 86 301 UNP A0A087I947_VIBVL DBREF2 5X0V A A0A087I947 86 301 DBREF1 5X0V B 86 301 UNP A0A087I947_VIBVL DBREF2 5X0V B A0A087I947 86 301 SEQADV 5X0V GLY A 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0V ALA A 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0V MET A 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0V GLY B 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0V ALA B 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5X0V MET B 85 UNP A0A087I94 EXPRESSION TAG SEQRES 1 A 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 A 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 A 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 A 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 A 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 A 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 A 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 A 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 A 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 A 219 LEU LEU GLU LYS GLU HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 A 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 A 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 A 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 A 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 A 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 A 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 A 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 B 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 B 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 B 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 B 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 B 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 B 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 B 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 B 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 B 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 B 219 LEU LEU GLU LYS GLU HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 B 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 B 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 B 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 B 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 B 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 B 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 B 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU HET CL A 401 1 HET CIT B 401 13 HET CL B 402 1 HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID FORMUL 3 CL 2(CL 1-) FORMUL 4 CIT C6 H8 O7 FORMUL 6 HOH *440(H2 O) HELIX 1 AA1 ILE A 108 PHE A 124 1 17 HELIX 2 AA2 THR A 135 HIS A 145 1 11 HELIX 3 AA3 ARG A 178 GLY A 182 1 5 HELIX 4 AA4 LYS A 189 LEU A 193 5 5 HELIX 5 AA5 CYS A 206 CYS A 215 1 10 HELIX 6 AA6 ASP A 219 ILE A 223 5 5 HELIX 7 AA7 SER A 230 ASN A 240 1 11 HELIX 8 AA8 GLN A 249 HIS A 254 1 6 HELIX 9 AA9 ARG A 286 LEU A 300 1 15 HELIX 10 AB1 ILE B 108 PHE B 124 1 17 HELIX 11 AB2 THR B 135 HIS B 145 1 11 HELIX 12 AB3 HIS B 179 ALA B 181 5 3 HELIX 13 AB4 LYS B 189 LEU B 193 5 5 HELIX 14 AB5 HIS B 205 CYS B 215 1 11 HELIX 15 AB6 ASP B 219 ILE B 223 5 5 HELIX 16 AB7 SER B 230 ASN B 240 1 11 HELIX 17 AB8 GLN B 249 HIS B 254 1 6 HELIX 18 AB9 ARG B 286 LEU B 300 1 15 SHEET 1 AA1 6 LEU A 127 GLU A 133 0 SHEET 2 AA1 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA1 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA1 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA1 6 GLU A 163 SER A 177 -1 N GLU A 163 O TRP A 280 SHEET 6 AA1 6 THR A 245 PRO A 248 -1 O ILE A 247 N LYS A 173 SHEET 1 AA2 6 LEU A 127 GLU A 133 0 SHEET 2 AA2 6 GLY A 98 CYS A 104 1 N GLY A 98 O ASN A 128 SHEET 3 AA2 6 VAL A 150 LEU A 155 1 O ILE A 152 N GLY A 103 SHEET 4 AA2 6 TYR A 273 TRP A 280 -1 O GLY A 277 N LEU A 153 SHEET 5 AA2 6 GLU A 163 SER A 177 -1 N GLU A 163 O TRP A 280 SHEET 6 AA2 6 LEU A 262 ILE A 265 -1 O ILE A 265 N MET A 174 SHEET 1 AA3 6 LEU B 127 GLU B 133 0 SHEET 2 AA3 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA3 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA3 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA3 6 GLU B 163 SER B 177 -1 N ASP B 170 O ARG B 274 SHEET 6 AA3 6 THR B 245 PRO B 248 -1 O ILE B 247 N LYS B 173 SHEET 1 AA4 6 LEU B 127 GLU B 133 0 SHEET 2 AA4 6 GLY B 98 CYS B 104 1 N GLY B 98 O ASN B 128 SHEET 3 AA4 6 VAL B 150 LEU B 155 1 O ILE B 152 N GLY B 103 SHEET 4 AA4 6 TYR B 273 TRP B 280 -1 O GLY B 277 N LEU B 153 SHEET 5 AA4 6 GLU B 163 SER B 177 -1 N ASP B 170 O ARG B 274 SHEET 6 AA4 6 LEU B 262 ILE B 265 -1 O ILE B 265 N MET B 174 CISPEP 1 LEU A 155 PRO A 156 0 1.54 CISPEP 2 VAL A 186 PRO A 187 0 0.00 CISPEP 3 LEU B 155 PRO B 156 0 7.12 CISPEP 4 VAL B 186 PRO B 187 0 -1.39 SITE 1 AC1 5 THR A 136 GLU A 204 HIS A 205 CYS A 206 SITE 2 AC1 5 HOH A 631 SITE 1 AC2 12 ARG A 144 HIS A 145 HOH A 516 HOH A 523 SITE 2 AC2 12 ARG B 281 SER B 285 HOH B 533 HOH B 538 SITE 3 AC2 12 HOH B 553 HOH B 556 HOH B 561 HOH B 581 SITE 1 AC3 5 ILE B 105 THR B 136 GLU B 204 CYS B 206 SITE 2 AC3 5 HOH B 596 CRYST1 70.204 138.348 97.473 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014244 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010259 0.00000