HEADER TRANSFERASE 25-JAN-17 5X17 TITLE CRYSTAL STRUCTURE OF MURINE CK1D IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM DELTA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-294; COMPND 5 SYNONYM: CKID,TAU-PROTEIN KINASE CSNK1D; COMPND 6 EC: 2.7.11.1,2.7.11.26; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CSNK1D, HCKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS CK1D, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KIKUCHI,Y.SHINOHARA,H.R.UEDA,T.UMEHARA REVDAT 2 22-NOV-23 5X17 1 REMARK REVDAT 1 04-OCT-17 5X17 0 JRNL AUTH Y.SHINOHARA,Y.M.KOYAMA,M.UKAI-TADENUMA,T.HIROKAWA,M.KIKUCHI, JRNL AUTH 2 R.G.YAMADA,H.UKAI,H.FUJISHIMA,T.UMEHARA,K.TAINAKA,H.R.UEDA JRNL TITL TEMPERATURE-SENSITIVE SUBSTRATE AND PRODUCT BINDING UNDERLIE JRNL TITL 2 TEMPERATURE-COMPENSATED PHOSPHORYLATION IN THE CLOCK JRNL REF MOL. CELL V. 67 783 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28886336 JRNL DOI 10.1016/J.MOLCEL.2017.08.009 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4885 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4548 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6603 ; 1.667 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10428 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;36.203 ;22.807 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;13.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5440 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1204 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2321 ; 2.713 ; 3.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2320 ; 2.712 ; 3.482 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2900 ; 3.962 ; 5.208 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2901 ; 3.961 ; 5.210 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2564 ; 3.117 ; 3.755 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2565 ; 3.116 ; 3.755 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3703 ; 4.870 ; 5.501 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5660 ; 6.663 ;39.412 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5661 ; 6.663 ;39.409 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41687 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CITRATE, 25 MM (NH4)2SO4 AND REMARK 280 7 % PEG 8000, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.17450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 293 REMARK 465 LYS A 294 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 293 REMARK 465 LYS B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 172 CG OD1 ND2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 524 O HOH A 548 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 265 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 123 7.36 83.12 REMARK 500 ARG A 127 1.41 81.19 REMARK 500 ASP A 128 54.37 -143.17 REMARK 500 ASP A 149 78.89 70.17 REMARK 500 ASP B 128 56.07 -155.94 REMARK 500 ASP B 149 82.44 69.25 REMARK 500 TYR B 284 40.01 -90.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X18 RELATED DB: PDB DBREF 5X17 A 1 294 UNP Q9DC28 KC1D_MOUSE 1 294 DBREF 5X17 B 1 294 UNP Q9DC28 KC1D_MOUSE 1 294 SEQADV 5X17 GLY A -1 UNP Q9DC28 EXPRESSION TAG SEQADV 5X17 GLY A 0 UNP Q9DC28 EXPRESSION TAG SEQADV 5X17 GLY B -1 UNP Q9DC28 EXPRESSION TAG SEQADV 5X17 GLY B 0 UNP Q9DC28 EXPRESSION TAG SEQRES 1 A 296 GLY GLY MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 A 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 A 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 A 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 A 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 A 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 A 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 A 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 A 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 A 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 A 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 A 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 A 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 A 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 A 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 A 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 A 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 A 296 THR LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 A 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 A 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 A 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 A 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 A 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS SEQRES 1 B 296 GLY GLY MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 B 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 B 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 B 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 B 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 B 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 B 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 B 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 B 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 B 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 B 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 B 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 B 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 B 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 B 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 B 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 B 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 B 296 THR LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 B 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 B 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 B 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 B 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 B 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET ADP A 307 27 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET ADP B 306 27 HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 SO4 11(O4 S 2-) FORMUL 9 ADP 2(C10 H15 N5 O10 P2) FORMUL 16 HOH *311(H2 O) HELIX 1 AA1 GLN A 48 MET A 59 1 12 HELIX 2 AA2 SER A 88 CYS A 96 1 9 HELIX 3 AA3 SER A 101 LYS A 122 1 22 HELIX 4 AA4 LYS A 130 ASP A 132 5 3 HELIX 5 AA5 LEU A 138 GLY A 142 5 5 HELIX 6 AA6 THR A 176 ALA A 180 5 5 HELIX 7 AA7 SER A 181 LEU A 186 1 6 HELIX 8 AA8 SER A 191 GLY A 209 1 19 HELIX 9 AA9 THR A 220 SER A 234 1 15 HELIX 10 AB1 PRO A 236 CYS A 241 1 6 HELIX 11 AB2 SER A 246 LEU A 258 1 13 HELIX 12 AB3 ASP A 265 GLN A 280 1 16 HELIX 13 AB4 PHE A 288 MET A 292 5 5 HELIX 14 AB5 GLN B 48 GLN B 60 1 13 HELIX 15 AB6 SER B 88 CYS B 96 1 9 HELIX 16 AB7 SER B 101 LYS B 122 1 22 HELIX 17 AB8 LYS B 130 ASP B 132 5 3 HELIX 18 AB9 LEU B 138 GLY B 142 5 5 HELIX 19 AC1 SER B 181 LEU B 186 1 6 HELIX 20 AC2 SER B 191 GLY B 209 1 19 HELIX 21 AC3 THR B 220 THR B 235 1 16 HELIX 22 AC4 PRO B 236 CYS B 241 1 6 HELIX 23 AC5 PRO B 245 LEU B 258 1 14 HELIX 24 AC6 ASP B 265 GLY B 281 1 17 HELIX 25 AC7 PHE B 288 MET B 292 5 5 SHEET 1 AA1 6 ARG A 4 VAL A 5 0 SHEET 2 AA1 6 TYR A 9 GLY A 16 -1 O TYR A 9 N VAL A 5 SHEET 3 AA1 6 ASP A 22 ASP A 28 -1 O ILE A 23 N GLY A 16 SHEET 4 AA1 6 GLU A 33 CYS A 41 -1 O GLU A 33 N ASP A 28 SHEET 5 AA1 6 TYR A 77 GLU A 83 -1 O MET A 82 N ALA A 36 SHEET 6 AA1 6 ILE A 68 GLU A 74 -1 N TRP A 70 O VAL A 81 SHEET 1 AA2 2 PHE A 124 ILE A 125 0 SHEET 2 AA2 2 LYS A 154 LYS A 155 -1 O LYS A 154 N ILE A 125 SHEET 1 AA3 2 PHE A 134 MET A 136 0 SHEET 2 AA3 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 SHEET 1 AA4 5 TYR B 9 GLY B 16 0 SHEET 2 AA4 5 ASP B 22 ASP B 28 -1 O LEU B 25 N ARG B 13 SHEET 3 AA4 5 GLU B 33 CYS B 41 -1 O ILE B 37 N TYR B 24 SHEET 4 AA4 5 TYR B 77 GLU B 83 -1 O MET B 82 N ALA B 36 SHEET 5 AA4 5 ILE B 68 GLU B 74 -1 N TRP B 70 O VAL B 81 SHEET 1 AA5 2 PHE B 124 ILE B 125 0 SHEET 2 AA5 2 LYS B 154 LYS B 155 -1 O LYS B 154 N ILE B 125 SHEET 1 AA6 2 PHE B 134 MET B 136 0 SHEET 2 AA6 2 VAL B 145 ILE B 147 -1 O TYR B 146 N LEU B 135 SITE 1 AC1 7 ARG A 178 GLN A 214 GLY A 215 LYS A 224 SITE 2 AC1 7 HOH A 402 HOH A 409 HOH A 425 SITE 1 AC2 3 SER A 267 ARG A 270 ARG A 274 SITE 1 AC3 5 ARG A 157 ARG A 192 LYS A 263 HOH A 414 SITE 2 AC3 5 HOH A 428 SITE 1 AC4 5 ARG A 127 LYS A 154 ASN A 170 ASN A 172 SITE 2 AC4 5 THR A 174 SITE 1 AC5 5 GLY A 175 THR A 176 ALA A 177 TYR A 225 SITE 2 AC5 5 HOH A 402 SITE 1 AC6 3 ARG A 8 TRP A 70 ARG B 8 SITE 1 AC7 19 GLY A 18 ILE A 23 ALA A 36 LYS A 38 SITE 2 AC7 19 GLU A 52 TYR A 56 GLU A 83 LEU A 85 SITE 3 AC7 19 ASP A 132 LEU A 135 ILE A 148 ASP A 149 SITE 4 AC7 19 HOH A 404 HOH A 407 HOH A 438 HOH A 446 SITE 5 AC7 19 HOH A 462 HOH A 470 HOH A 499 SITE 1 AC8 3 ARG B 127 LYS B 154 LYS B 171 SITE 1 AC9 4 ARG B 178 GLN B 214 GLY B 215 LYS B 224 SITE 1 AD1 4 SER B 267 ARG B 270 GLN B 271 ARG B 274 SITE 1 AD2 3 ARG B 157 ARG B 192 LYS B 263 SITE 1 AD3 3 LYS B 103 PHE B 282 SER B 283 SITE 1 AD4 21 GLY B 16 GLY B 18 ILE B 23 ALA B 36 SITE 2 AD4 21 LYS B 38 GLU B 52 TYR B 56 GLU B 83 SITE 3 AD4 21 LEU B 84 LEU B 85 ASP B 132 LEU B 135 SITE 4 AD4 21 ILE B 148 ASP B 149 HOH B 402 HOH B 415 SITE 5 AD4 21 HOH B 437 HOH B 447 HOH B 472 HOH B 481 SITE 6 AD4 21 HOH B 486 CRYST1 50.135 130.349 53.177 90.00 115.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019946 0.000000 0.009492 0.00000 SCALE2 0.000000 0.007672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020826 0.00000