HEADER PROTEIN TRANSPORT 25-JAN-17 5X1E TITLE STRUCTURE OF DOTL(656-783)-ICMS-ICMW DERIVED FROM LEGIONELLA TITLE 2 PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICMS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 5-114; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ICMW; COMPND 8 CHAIN: B, E; COMPND 9 FRAGMENT: UNP RESIDUES 2-149; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ICMO (DOTL); COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: UNP RESIDUES 672-773; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: ICMS; COMPND 18 CHAIN: D; COMPND 19 FRAGMENT: UNP RESIDUES 4-114; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: ICMO (DOTL); COMPND 23 CHAIN: F; COMPND 24 FRAGMENT: UNP RESIDUES 674-773; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 GENE: ICMS, LPG0442; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 11 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 12 ORGANISM_TAXID: 272624; SOURCE 13 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 14 GENE: ICMW, LPG2688; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 19 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 20 ORGANISM_TAXID: 272624; SOURCE 21 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 22 GENE: ICMO, LPG0446; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 27 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 28 ORGANISM_TAXID: 272624; SOURCE 29 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 30 GENE: ICMS, LPG0442; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 MOL_ID: 5; SOURCE 34 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 35 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 36 ORGANISM_TAXID: 272624; SOURCE 37 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 38 GENE: ICMO, LPG0446; SOURCE 39 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 40 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE IV SECRETION SYSTEM, COUPLING PROTEIN COMPLEX, EFFECTOR KEYWDS 2 TRANSLOCATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.D.KIM,M.J.KWAK,B.H.OH REVDAT 3 20-MAR-24 5X1E 1 REMARK REVDAT 2 02-AUG-17 5X1E 1 JRNL REVDAT 1 14-JUN-17 5X1E 0 JRNL AUTH M.J.KWAK,J.D.KIM,H.KIM,C.KIM,J.W.BOWMAN,S.KIM,K.JOO,J.LEE, JRNL AUTH 2 K.S.JIN,Y.G.KIM,N.K.LEE,J.U.JUNG,B.H.OH JRNL TITL ARCHITECTURE OF THE TYPE IV COUPLING PROTEIN COMPLEX OF JRNL TITL 2 LEGIONELLA PNEUMOPHILA JRNL REF NAT MICROBIOL V. 2 17114 2017 JRNL REFN ESSN 2058-5276 JRNL PMID 28714967 JRNL DOI 10.1038/NMICROBIOL.2017.114 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.720 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 86494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7621 - 5.8370 0.99 3858 165 0.1836 0.2290 REMARK 3 2 5.8370 - 4.6359 0.99 3852 167 0.1861 0.2357 REMARK 3 3 4.6359 - 4.0507 0.99 3830 161 0.1644 0.2019 REMARK 3 4 4.0507 - 3.6808 0.92 3573 143 0.1824 0.2245 REMARK 3 5 3.6808 - 3.4171 0.93 3604 148 0.2216 0.2653 REMARK 3 6 3.4171 - 3.2158 0.97 3789 165 0.2307 0.2748 REMARK 3 7 3.2158 - 3.0548 0.98 3755 163 0.2275 0.2884 REMARK 3 8 3.0548 - 2.9219 0.96 3727 162 0.2299 0.2831 REMARK 3 9 2.9219 - 2.8095 0.96 3722 158 0.2228 0.2700 REMARK 3 10 2.8095 - 2.7125 0.94 3698 162 0.2186 0.2569 REMARK 3 11 2.7125 - 2.6278 0.94 3654 149 0.2160 0.2845 REMARK 3 12 2.6278 - 2.5527 0.94 3639 154 0.2054 0.2913 REMARK 3 13 2.5527 - 2.4855 0.91 3539 154 0.2060 0.2013 REMARK 3 14 2.4855 - 2.4248 0.91 3504 152 0.2113 0.2853 REMARK 3 15 2.4248 - 2.3697 0.89 3496 143 0.2064 0.2478 REMARK 3 16 2.3697 - 2.3193 0.88 3409 145 0.2124 0.3300 REMARK 3 17 2.3193 - 2.2729 0.62 2384 98 0.2641 0.2543 REMARK 3 18 2.2729 - 2.2300 0.67 2591 107 0.4577 0.5120 REMARK 3 19 2.2300 - 2.1902 0.50 1934 83 0.2769 0.2810 REMARK 3 20 2.1902 - 2.1531 0.80 3082 134 0.2457 0.2759 REMARK 3 21 2.1531 - 2.1184 0.80 3083 134 0.2515 0.3090 REMARK 3 22 2.1184 - 2.0858 0.79 3091 128 0.2498 0.3088 REMARK 3 23 2.0858 - 2.0551 0.77 2975 130 0.2595 0.3119 REMARK 3 24 2.0551 - 2.0262 0.74 2895 122 0.2562 0.2881 REMARK 3 25 2.0262 - 1.9988 0.60 2281 102 0.2612 0.2793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5458 REMARK 3 ANGLE : 0.972 7407 REMARK 3 CHIRALITY : 0.051 877 REMARK 3 PLANARITY : 0.006 957 REMARK 3 DIHEDRAL : 13.186 3320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5X1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(V/V) PEG550 MONOETHYLETHER, 100MM REMARK 280 MES (PH 6.5), 10MM ZINC SULFATE AND 5MM SPERMINE REMARK 280 TETRAHYDROCHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.79850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.31850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.90150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.31850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.79850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.90150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 746 REMARK 465 GLU C 747 REMARK 465 ARG C 748 REMARK 465 ASP C 749 REMARK 465 VAL C 750 REMARK 465 GLU F 747 REMARK 465 ARG F 748 REMARK 465 ASP F 749 REMARK 465 VAL F 750 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LEU B 17 CG CD1 CD2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 672 CG CD OE1 OE2 REMARK 470 GLU C 707 CG CD OE1 OE2 REMARK 470 LYS C 724 CG CD CE NZ REMARK 470 GLU C 772 CG CD OE1 OE2 REMARK 470 LYS C 773 CG CD CE NZ REMARK 470 ASP D 4 CG OD1 OD2 REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 ASN D 17 CG OD1 ND2 REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 ARG D 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 31 CG CD OE1 OE2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 GLN D 48 CG CD OE1 NE2 REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 GLU D 66 CG CD OE1 OE2 REMARK 470 ARG D 103 CG CD NE CZ NH1 NH2 REMARK 470 MET D 112 CG SD CE REMARK 470 TYR D 113 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP D 114 CG OD1 OD2 REMARK 470 PRO E 2 CG CD REMARK 470 ASN E 33 CG OD1 ND2 REMARK 470 GLU E 44 CG CD OE1 OE2 REMARK 470 GLN E 48 CG CD OE1 NE2 REMARK 470 LEU E 61 CG CD1 CD2 REMARK 470 LEU E 64 CG CD1 CD2 REMARK 470 ARG E 99 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 105 CG CD OE1 OE2 REMARK 470 GLU E 106 CG CD OE1 OE2 REMARK 470 TYR E 138 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU F 696 CG CD OE1 OE2 REMARK 470 LYS F 722 CG CD CE NZ REMARK 470 ASP F 723 CG OD1 OD2 REMARK 470 LYS F 724 CG CD CE NZ REMARK 470 GLU F 746 CG CD OE1 OE2 REMARK 470 ILE F 751 CG1 CG2 CD1 REMARK 470 ASP F 752 CG OD1 OD2 REMARK 470 LYS F 773 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 29 O HOH B 201 2.05 REMARK 500 NH1 ARG C 717 OD2 ASP C 723 2.08 REMARK 500 O ASP C 723 O HOH C 801 2.14 REMARK 500 O HOH B 201 O HOH B 221 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 2 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP E 68 CB - CG - OD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP E 68 CB - CG - OD2 ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 13.11 59.94 REMARK 500 LEU B 109 -60.53 -97.43 REMARK 500 ALA C 719 -139.00 -78.93 REMARK 500 PRO D 101 -86.43 -45.37 REMARK 500 ASP E 37 150.61 -43.34 REMARK 500 ASP E 55 59.41 -144.61 REMARK 500 ASP F 723 -111.17 62.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 720 ALA C 721 -147.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X1H RELATED DB: PDB DBREF 5X1E A 5 114 UNP Q5ZYD0 Q5ZYD0_LEGPH 5 114 DBREF 5X1E B 2 149 UNP Q5ZS31 Q5ZS31_LEGPH 2 149 DBREF 5X1E C 672 773 UNP Q5ZYC6 Q5ZYC6_LEGPH 672 773 DBREF 5X1E D 4 114 UNP Q5ZYD0 Q5ZYD0_LEGPH 4 114 DBREF 5X1E E 2 149 UNP Q5ZS31 Q5ZS31_LEGPH 2 149 DBREF 5X1E F 674 773 UNP Q5ZYC6 Q5ZYC6_LEGPH 674 773 SEQRES 1 A 110 ILE SER LYS CYS MET ALA LYS ILE ALA ALA SER MET ASN SEQRES 2 A 110 ALA LYS PHE TYR LEU ASN ASP ARG PHE VAL SER PHE ASP SEQRES 3 A 110 GLU VAL PHE SER GLU THR GLY LEU LEU PRO ALA ILE ALA SEQRES 4 A 110 LYS ARG ALA ASP GLN LEU CYS SER LEU CYS LEU GLY TYR SEQRES 5 A 110 GLY LEU GLY ALA THR TYR ASP GLU SER GLU GLY ALA LEU SEQRES 6 A 110 LEU GLY ILE ARG VAL VAL PHE ASP GLU VAL THR PRO ASN SEQRES 7 A 110 VAL LEU ARG LEU LEU CYS MET THR ASP VAL MET ASN GLU SEQRES 8 A 110 LEU ILE GLN GLY GLY PRO SER ARG ASP TYR THR PRO LEU SEQRES 9 A 110 ASP GLU LEU MET TYR ASP SEQRES 1 B 148 PRO ASP LEU SER HIS GLU ALA SER ALA LYS TYR TRP PHE SEQRES 2 B 148 GLU TYR LEU ASP PRO MET ILE TYR ARG VAL ILE THR PHE SEQRES 3 B 148 MET GLU SER VAL GLU ASN TRP THR LEU ASP GLY ASN PRO SEQRES 4 B 148 GLU LEU GLU GLU ALA MET LYS GLN LEU GLY GLN GLU LEU SEQRES 5 B 148 ASP ASP ILE GLU LYS ILE ASP LEU GLY LEU LEU ALA GLU SEQRES 6 B 148 GLU ASP LYS PHE ILE ARG ILE VAL GLY ASN ILE LYS SER SEQRES 7 B 148 GLY ARG GLY LEU ARG LEU LEU GLN ALA ILE ASP THR VAL SEQRES 8 B 148 HIS PRO GLY SER ALA SER ARG VAL LEU ILE HIS ALA GLU SEQRES 9 B 148 GLU THR SER LEU SER SER SER ASP PRO ALA GLY PHE PHE SEQRES 10 B 148 LEU LYS ARG ASN ILE VAL PHE GLU ARG LEU ARG LEU LEU SEQRES 11 B 148 SER ARG VAL PHE CYS GLN TYR ARG LEU LYS LEU VAL LEU SEQRES 12 B 148 ARG ALA LEU GLU GLY SEQRES 1 C 102 GLU GLY ALA LEU THR ILE PHE SER LYS LEU ARG ILE ASP SEQRES 2 C 102 PRO ASN ALA PRO PRO ILE LEU VAL ALA ASP LYS GLU VAL SEQRES 3 C 102 PHE SER GLU PRO LEU LEU PRO ILE ASN GLU THR ARG ASN SEQRES 4 C 102 GLN MET ILE THR ILE GLU ARG LEU ALA GLY ALA LYS ASP SEQRES 5 C 102 LYS TYR ALA GLY THR VAL ALA ASN GLU LEU ILE LYS ASP SEQRES 6 C 102 PHE GLN ILE ALA THR SER TYR PRO PRO GLU GLU ARG ASP SEQRES 7 C 102 VAL ILE ASP VAL GLN GLU LEU THR GLY ILE ILE ARG ASP SEQRES 8 C 102 LEU SER ALA LYS ILE SER ALA GLU ARG GLU LYS SEQRES 1 D 111 ASP ILE SER LYS CYS MET ALA LYS ILE ALA ALA SER MET SEQRES 2 D 111 ASN ALA LYS PHE TYR LEU ASN ASP ARG PHE VAL SER PHE SEQRES 3 D 111 ASP GLU VAL PHE SER GLU THR GLY LEU LEU PRO ALA ILE SEQRES 4 D 111 ALA LYS ARG ALA ASP GLN LEU CYS SER LEU CYS LEU GLY SEQRES 5 D 111 TYR GLY LEU GLY ALA THR TYR ASP GLU SER GLU GLY ALA SEQRES 6 D 111 LEU LEU GLY ILE ARG VAL VAL PHE ASP GLU VAL THR PRO SEQRES 7 D 111 ASN VAL LEU ARG LEU LEU CYS MET THR ASP VAL MET ASN SEQRES 8 D 111 GLU LEU ILE GLN GLY GLY PRO SER ARG ASP TYR THR PRO SEQRES 9 D 111 LEU ASP GLU LEU MET TYR ASP SEQRES 1 E 148 PRO ASP LEU SER HIS GLU ALA SER ALA LYS TYR TRP PHE SEQRES 2 E 148 GLU TYR LEU ASP PRO MET ILE TYR ARG VAL ILE THR PHE SEQRES 3 E 148 MET GLU SER VAL GLU ASN TRP THR LEU ASP GLY ASN PRO SEQRES 4 E 148 GLU LEU GLU GLU ALA MET LYS GLN LEU GLY GLN GLU LEU SEQRES 5 E 148 ASP ASP ILE GLU LYS ILE ASP LEU GLY LEU LEU ALA GLU SEQRES 6 E 148 GLU ASP LYS PHE ILE ARG ILE VAL GLY ASN ILE LYS SER SEQRES 7 E 148 GLY ARG GLY LEU ARG LEU LEU GLN ALA ILE ASP THR VAL SEQRES 8 E 148 HIS PRO GLY SER ALA SER ARG VAL LEU ILE HIS ALA GLU SEQRES 9 E 148 GLU THR SER LEU SER SER SER ASP PRO ALA GLY PHE PHE SEQRES 10 E 148 LEU LYS ARG ASN ILE VAL PHE GLU ARG LEU ARG LEU LEU SEQRES 11 E 148 SER ARG VAL PHE CYS GLN TYR ARG LEU LYS LEU VAL LEU SEQRES 12 E 148 ARG ALA LEU GLU GLY SEQRES 1 F 100 ALA LEU THR ILE PHE SER LYS LEU ARG ILE ASP PRO ASN SEQRES 2 F 100 ALA PRO PRO ILE LEU VAL ALA ASP LYS GLU VAL PHE SER SEQRES 3 F 100 GLU PRO LEU LEU PRO ILE ASN GLU THR ARG ASN GLN MET SEQRES 4 F 100 ILE THR ILE GLU ARG LEU ALA GLY ALA LYS ASP LYS TYR SEQRES 5 F 100 ALA GLY THR VAL ALA ASN GLU LEU ILE LYS ASP PHE GLN SEQRES 6 F 100 ILE ALA THR SER TYR PRO PRO GLU GLU ARG ASP VAL ILE SEQRES 7 F 100 ASP VAL GLN GLU LEU THR GLY ILE ILE ARG ASP LEU SER SEQRES 8 F 100 ALA LYS ILE SER ALA GLU ARG GLU LYS FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 ILE A 5 MET A 16 1 12 HELIX 2 AA2 SER A 28 PHE A 33 1 6 HELIX 3 AA3 LEU A 38 GLY A 55 1 18 HELIX 4 AA4 PRO A 81 GLY A 100 1 20 HELIX 5 AA5 ASP A 109 ASP A 114 5 6 HELIX 6 AA6 SER B 5 GLU B 15 1 11 HELIX 7 AA7 PRO B 19 SER B 30 1 12 HELIX 8 AA8 ASN B 39 LEU B 53 1 15 HELIX 9 AA9 ASP B 60 LEU B 64 5 5 HELIX 10 AB1 GLU B 66 GLY B 75 1 10 HELIX 11 AB2 LYS B 78 THR B 91 1 14 HELIX 12 AB3 GLY B 95 SER B 108 1 14 HELIX 13 AB4 ASP B 113 PHE B 135 1 23 HELIX 14 AB5 CYS B 136 GLU B 148 1 13 HELIX 15 AB6 ASP C 694 GLU C 700 1 7 HELIX 16 AB7 PRO C 704 ALA C 719 1 16 HELIX 17 AB8 LYS C 722 THR C 741 1 20 HELIX 18 AB9 ASP C 752 LYS C 773 1 22 HELIX 19 AC1 ILE D 5 MET D 16 1 12 HELIX 20 AC2 SER D 28 PHE D 33 1 6 HELIX 21 AC3 LEU D 38 GLY D 55 1 18 HELIX 22 AC4 PRO D 81 GLY D 100 1 20 HELIX 23 AC5 ASP D 109 ASP D 114 5 6 HELIX 24 AC6 SER E 5 GLU E 15 1 11 HELIX 25 AC7 PRO E 19 SER E 30 1 12 HELIX 26 AC8 ASN E 39 LEU E 53 1 15 HELIX 27 AC9 GLU E 66 ILE E 77 1 12 HELIX 28 AD1 LYS E 78 HIS E 93 1 16 HELIX 29 AD2 GLY E 95 SER E 108 1 14 HELIX 30 AD3 ASP E 113 PHE E 135 1 23 HELIX 31 AD4 CYS E 136 GLY E 149 1 14 HELIX 32 AD5 ASP F 694 GLU F 700 1 7 HELIX 33 AD6 PRO F 704 ALA F 719 1 16 HELIX 34 AD7 LYS F 722 LYS F 724 5 3 HELIX 35 AD8 TYR F 725 SER F 742 1 18 HELIX 36 AD9 ASP F 752 LYS F 773 1 22 SHEET 1 AA1 3 ARG A 25 VAL A 27 0 SHEET 2 AA1 3 PHE A 20 LEU A 22 -1 N LEU A 22 O ARG A 25 SHEET 3 AA1 3 THR A 106 PRO A 107 1 O THR A 106 N TYR A 21 SHEET 1 AA2 2 ALA A 60 GLU A 64 0 SHEET 2 AA2 2 ILE A 72 PHE A 76 -1 O ARG A 73 N ASP A 63 SHEET 1 AA3 3 ARG D 25 VAL D 27 0 SHEET 2 AA3 3 PHE D 20 LEU D 22 -1 N LEU D 22 O ARG D 25 SHEET 3 AA3 3 THR D 106 PRO D 107 1 O THR D 106 N TYR D 21 SHEET 1 AA4 2 ALA D 60 GLU D 64 0 SHEET 2 AA4 2 ILE D 72 PHE D 76 -1 O VAL D 75 N THR D 61 CISPEP 1 TYR C 743 PRO C 744 0 -1.14 CISPEP 2 TYR F 743 PRO F 744 0 4.87 CRYST1 67.597 75.803 150.637 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006638 0.00000