HEADER STRUCTURAL PROTEIN 25-JAN-17 5X1G TITLE WHAMM'S MICROTUBULE BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: WASP HOMOLOG-ASSOCIATED PROTEIN WITH ACTIN, MEMBRANES AND COMPND 3 MICROTUBULES; COMPND 4 CHAIN: C; COMPND 5 FRAGMENT: UNP RESIDUES 513-546; COMPND 6 SYNONYM: WAS PROTEIN HOMOLOGY REGION 2 DOMAIN-CONTAINING PROTEIN 1, COMPND 7 WH2 DOMAIN-CONTAINING PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WHAMM, KIAA1971, WHDC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS MICROTUBULE, HELICAL RECONSTRUCTION, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR T.LIU,H.W.WANG REVDAT 3 27-MAR-24 5X1G 1 REMARK REVDAT 2 09-OCT-19 5X1G 1 REMARK CRYST1 SCALE REVDAT 1 05-JUL-17 5X1G 0 JRNL AUTH T.LIU,A.DAI,Y.CAO,R.ZHANG,M.Q.DONG,H.W.WANG JRNL TITL STRUCTURAL INSIGHTS OF WHAMM'S INTERACTION WITH MICROTUBULES JRNL TITL 2 BY CRYO-EM JRNL REF J. MOL. BIOL. V. 429 1352 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28351611 JRNL DOI 10.1016/J.JMB.2017.03.022 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.500 REMARK 3 NUMBER OF PARTICLES : 8000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5X1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002629. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF ALPHA,BETA REMARK 245 -TUBULIN DIMER WITH MICROTUBULE REMARK 245 BINDING MOTIF OF WHAMM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE C 513 REMARK 465 GLN C 514 REMARK 465 MET C 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 516 CG CD CE NZ REMARK 470 ARG C 517 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 518 CG OD1 OD2 REMARK 470 LYS C 519 CG CD CE NZ REMARK 470 ILE C 520 CG1 CG2 CD1 REMARK 470 LYS C 521 CG CD CE NZ REMARK 470 GLU C 522 CG CD OE1 OE2 REMARK 470 GLU C 523 CG CD OE1 OE2 REMARK 470 GLU C 524 CG CD OE1 OE2 REMARK 470 GLN C 525 CG CD OE1 NE2 REMARK 470 LYS C 526 CG CD CE NZ REMARK 470 LYS C 527 CG CD CE NZ REMARK 470 LYS C 528 CG CD CE NZ REMARK 470 GLU C 529 CG CD OE1 OE2 REMARK 470 TRP C 530 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 530 CZ3 CH2 REMARK 470 ILE C 531 CG1 CG2 CD1 REMARK 470 ASN C 532 CG OD1 ND2 REMARK 470 GLN C 533 CG CD OE1 NE2 REMARK 470 GLU C 534 CG CD OE1 OE2 REMARK 470 ARG C 535 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 536 CG CD OE1 NE2 REMARK 470 LYS C 537 CG CD CE NZ REMARK 470 THR C 538 OG1 CG2 REMARK 470 LEU C 539 CG CD1 CD2 REMARK 470 GLN C 540 CG CD OE1 NE2 REMARK 470 ARG C 541 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 542 CG CD1 CD2 REMARK 470 ARG C 543 CG CD NE CZ NH1 NH2 REMARK 470 SER C 544 OG REMARK 470 PHE C 545 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 546 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 522 133.07 -170.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6701 RELATED DB: EMDB REMARK 900 WHAMM'S MICROTUBULE BINDING MOTIF DBREF 5X1G C 513 546 UNP Q8TF30 WHAMM_HUMAN 513 546 SEQRES 1 C 34 ILE GLN MET LYS ARG ASP LYS ILE LYS GLU GLU GLU GLN SEQRES 2 C 34 LYS LYS LYS GLU TRP ILE ASN GLN GLU ARG GLN LYS THR SEQRES 3 C 34 LEU GLN ARG LEU ARG SER PHE LYS HELIX 1 AA1 GLU C 524 ARG C 541 1 18 HELIX 2 AA2 ARG C 541 LYS C 546 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000