HEADER OXIDOREDUCTASE 26-JAN-17 5X1N TITLE VANILLATE/3-O-METHYLGALLATE O-DEMETHYLASE, LIGM, PROTOCATECHUATE- TITLE 2 TETRAHYDROFOLATE COMPLEX FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: VANILLATE/3-O-METHYLGALLATE O-DEMETHYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGM, SLG_12740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIGNIN, SPHINGOBIUM SP. SYK-6, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HARADA,T.SENDA REVDAT 4 22-NOV-23 5X1N 1 REMARK REVDAT 3 28-JUN-17 5X1N 1 JRNL REVDAT 2 31-MAY-17 5X1N 1 JRNL REVDAT 1 17-MAY-17 5X1N 0 JRNL AUTH A.HARADA,N.KAMIMURA,K.TAKEUCHI,H.Y.YU,E.MASAI,T.SENDA JRNL TITL THE CRYSTAL STRUCTURE OF A NEW O-DEMETHYLASE FROM JRNL TITL 2 SPHINGOBIUM SP. STRAIN SYK-6 JRNL REF FEBS J. V. 284 1855 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28429420 JRNL DOI 10.1111/FEBS.14085 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 226533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 11277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0725 - 6.2104 1.00 7201 360 0.2406 0.2450 REMARK 3 2 6.2104 - 4.9309 1.00 7099 434 0.1917 0.2182 REMARK 3 3 4.9309 - 4.3080 1.00 7236 306 0.1625 0.1671 REMARK 3 4 4.3080 - 3.9143 1.00 7184 381 0.1711 0.2019 REMARK 3 5 3.9143 - 3.6338 1.00 7210 354 0.1872 0.2177 REMARK 3 6 3.6338 - 3.4196 1.00 7174 355 0.1873 0.1845 REMARK 3 7 3.4196 - 3.2484 1.00 7159 412 0.1969 0.2197 REMARK 3 8 3.2484 - 3.1070 1.00 7156 383 0.2171 0.2394 REMARK 3 9 3.1070 - 2.9874 1.00 7163 379 0.2234 0.2902 REMARK 3 10 2.9874 - 2.8844 1.00 7133 377 0.2190 0.2472 REMARK 3 11 2.8844 - 2.7942 1.00 7238 366 0.2262 0.2708 REMARK 3 12 2.7942 - 2.7143 1.00 7162 389 0.2222 0.2422 REMARK 3 13 2.7143 - 2.6429 1.00 7195 345 0.2325 0.2612 REMARK 3 14 2.6429 - 2.5784 1.00 7132 410 0.2334 0.2574 REMARK 3 15 2.5784 - 2.5198 1.00 7100 424 0.2325 0.2494 REMARK 3 16 2.5198 - 2.4662 1.00 7173 356 0.2271 0.2759 REMARK 3 17 2.4662 - 2.4168 1.00 7201 384 0.2303 0.2815 REMARK 3 18 2.4168 - 2.3712 1.00 7138 390 0.2379 0.2643 REMARK 3 19 2.3712 - 2.3289 1.00 7273 341 0.2358 0.2757 REMARK 3 20 2.3289 - 2.2894 1.00 7121 447 0.2424 0.2876 REMARK 3 21 2.2894 - 2.2525 1.00 7106 407 0.2432 0.2995 REMARK 3 22 2.2525 - 2.2178 1.00 7094 430 0.2488 0.2579 REMARK 3 23 2.2178 - 2.1852 1.00 7153 370 0.2494 0.2427 REMARK 3 24 2.1852 - 2.1544 1.00 7252 383 0.2484 0.2964 REMARK 3 25 2.1544 - 2.1253 1.00 7160 366 0.2568 0.3013 REMARK 3 26 2.1253 - 2.0977 1.00 7095 385 0.2688 0.2895 REMARK 3 27 2.0977 - 2.0715 1.00 7300 319 0.2749 0.3177 REMARK 3 28 2.0715 - 2.0465 1.00 7252 308 0.2812 0.3392 REMARK 3 29 2.0465 - 2.0227 1.00 7069 382 0.2918 0.3407 REMARK 3 30 2.0227 - 2.0000 1.00 7327 334 0.3015 0.3442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7444 REMARK 3 ANGLE : 0.829 10146 REMARK 3 CHIRALITY : 0.055 1067 REMARK 3 PLANARITY : 0.006 1314 REMARK 3 DIHEDRAL : 14.303 4315 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5X1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 235738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5X1I REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.1M LICL, 30% REMARK 280 PEG8000, 5MM THF, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.06500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.13000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.13000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 207 REMARK 465 MET A 208 REMARK 465 ALA A 209 REMARK 465 GLY A 210 REMARK 465 ALA A 211 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 VAL A 469 REMARK 465 THR A 470 REMARK 465 ALA A 471 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 MET B 208 REMARK 465 ALA B 209 REMARK 465 GLY B 210 REMARK 465 THR B 459 REMARK 465 TYR B 460 REMARK 465 GLU B 461 REMARK 465 GLY B 462 REMARK 465 GLY B 463 REMARK 465 TRP B 464 REMARK 465 ARG B 465 REMARK 465 LYS B 466 REMARK 465 ALA B 467 REMARK 465 ALA B 468 REMARK 465 VAL B 469 REMARK 465 THR B 470 REMARK 465 ALA B 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLN A 158 CD OE1 NE2 REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 348 CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CD OE1 OE2 REMARK 470 ARG B 67 CD NE CZ NH1 NH2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 GLN B 158 CG CD OE1 NE2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 470 GLU B 357 CG CD OE1 OE2 REMARK 470 GLU B 458 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 -52.33 76.72 REMARK 500 SER A 39 -80.85 -109.69 REMARK 500 SER A 51 -105.41 -138.03 REMARK 500 ALA A 192 -141.38 -147.31 REMARK 500 ALA A 377 88.59 -151.24 REMARK 500 VAL B 33 -53.65 73.42 REMARK 500 SER B 39 -81.28 -112.26 REMARK 500 SER B 51 -101.22 -135.64 REMARK 500 ALA B 192 -137.68 -137.59 REMARK 500 ARG B 457 -76.93 -71.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHB A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHB B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X1I RELATED DB: PDB REMARK 900 RELATED ID: 5X1J RELATED DB: PDB REMARK 900 RELATED ID: 5X1K RELATED DB: PDB REMARK 900 RELATED ID: 5X1L RELATED DB: PDB REMARK 900 RELATED ID: 5X1M RELATED DB: PDB DBREF 5X1N A 1 471 UNP G2IQS7 G2IQS7_9SPHN 1 471 DBREF 5X1N B 1 471 UNP G2IQS7 G2IQS7_9SPHN 1 471 SEQADV 5X1N GLY A -2 UNP G2IQS7 EXPRESSION TAG SEQADV 5X1N SER A -1 UNP G2IQS7 EXPRESSION TAG SEQADV 5X1N SER A 0 UNP G2IQS7 EXPRESSION TAG SEQADV 5X1N GLY B -2 UNP G2IQS7 EXPRESSION TAG SEQADV 5X1N SER B -1 UNP G2IQS7 EXPRESSION TAG SEQADV 5X1N SER B 0 UNP G2IQS7 EXPRESSION TAG SEQRES 1 A 474 GLY SER SER MET SER ALA PRO THR ASN LEU GLU GLN VAL SEQRES 2 A 474 LEU ALA ALA GLY GLY ASN THR VAL GLU MET LEU ARG ASN SEQRES 3 A 474 SER GLN ILE GLY ALA TYR VAL TYR PRO VAL VAL ALA PRO SEQRES 4 A 474 GLU PHE SER ASN TRP ARG THR GLU GLN TRP ALA TRP ARG SEQRES 5 A 474 ASN SER ALA VAL LEU PHE ASP GLN THR HIS HIS MET VAL SEQRES 6 A 474 ASP LEU TYR ILE ARG GLY LYS ASP ALA LEU LYS LEU LEU SEQRES 7 A 474 SER ASP THR MET ILE ASN SER PRO LYS GLY TRP GLU PRO SEQRES 8 A 474 ASN LYS ALA LYS GLN TYR VAL PRO VAL THR PRO TYR GLY SEQRES 9 A 474 HIS VAL ILE GLY ASP GLY ILE ILE PHE TYR LEU ALA GLU SEQRES 10 A 474 GLU GLU PHE VAL TYR VAL GLY ARG ALA PRO ALA ALA ASN SEQRES 11 A 474 TRP LEU MET TYR HIS ALA GLN THR GLY GLY TYR ASN VAL SEQRES 12 A 474 ASP ILE VAL HIS ASP ASP ARG SER PRO SER ARG PRO MET SEQRES 13 A 474 GLY LYS PRO VAL GLN ARG ILE SER TRP ARG PHE GLN ILE SEQRES 14 A 474 GLN GLY PRO LYS ALA TRP ASP VAL ILE GLU LYS LEU HIS SEQRES 15 A 474 GLY GLY THR LEU GLU LYS LEU LYS PHE PHE ASN MET ALA SEQRES 16 A 474 GLU MET ASN ILE ALA GLY MET LYS ILE ARG THR LEU ARG SEQRES 17 A 474 HIS GLY MET ALA GLY ALA PRO GLY LEU GLU ILE TRP GLY SEQRES 18 A 474 PRO TYR GLU THR GLN GLU LYS ALA ARG ASN ALA ILE LEU SEQRES 19 A 474 GLU ALA GLY LYS GLU PHE GLY LEU ILE PRO VAL GLY SER SEQRES 20 A 474 ARG ALA TYR PRO SER ASN THR LEU GLU SER GLY TRP ILE SEQRES 21 A 474 PRO SER PRO LEU PRO ALA ILE TYR THR GLY ASP LYS LEU SEQRES 22 A 474 LYS ALA TYR ARG GLU TRP LEU PRO ALA ASN SER TYR GLU SEQRES 23 A 474 ALA SER GLY ALA ILE GLY GLY SER PHE VAL SER SER ASN SEQRES 24 A 474 ILE GLU ASP TYR TYR VAL ASN PRO TYR GLU ILE GLY TYR SEQRES 25 A 474 GLY PRO PHE VAL LYS PHE ASP HIS ASP PHE ILE GLY ARG SEQRES 26 A 474 ASP ALA LEU GLU ALA ILE ASP PRO ALA THR GLN ARG LYS SEQRES 27 A 474 LYS VAL THR LEU ALA TRP ASN GLY ASP ASP MET ALA LYS SEQRES 28 A 474 ILE TYR ALA SER LEU PHE ASP THR GLU ALA ASP ALA HIS SEQRES 29 A 474 TYR LYS PHE PHE ASP LEU PRO LEU ALA ASN TYR ALA ASN SEQRES 30 A 474 THR ASN ALA ASP ALA VAL LEU ASP ALA ALA GLY ASN VAL SEQRES 31 A 474 VAL GLY MET SER MET PHE THR GLY TYR SER TYR ASN GLU SEQRES 32 A 474 LYS ARG ALA LEU SER LEU ALA THR ILE ASP HIS GLU ILE SEQRES 33 A 474 PRO VAL GLY THR GLU LEU THR VAL LEU TRP GLY GLU GLU SEQRES 34 A 474 ASN GLY GLY THR ARG LYS THR THR VAL GLU PRO HIS LYS SEQRES 35 A 474 GLN MET ALA VAL ARG ALA VAL VAL SER PRO VAL PRO TYR SEQRES 36 A 474 SER VAL THR ALA ARG GLU THR TYR GLU GLY GLY TRP ARG SEQRES 37 A 474 LYS ALA ALA VAL THR ALA SEQRES 1 B 474 GLY SER SER MET SER ALA PRO THR ASN LEU GLU GLN VAL SEQRES 2 B 474 LEU ALA ALA GLY GLY ASN THR VAL GLU MET LEU ARG ASN SEQRES 3 B 474 SER GLN ILE GLY ALA TYR VAL TYR PRO VAL VAL ALA PRO SEQRES 4 B 474 GLU PHE SER ASN TRP ARG THR GLU GLN TRP ALA TRP ARG SEQRES 5 B 474 ASN SER ALA VAL LEU PHE ASP GLN THR HIS HIS MET VAL SEQRES 6 B 474 ASP LEU TYR ILE ARG GLY LYS ASP ALA LEU LYS LEU LEU SEQRES 7 B 474 SER ASP THR MET ILE ASN SER PRO LYS GLY TRP GLU PRO SEQRES 8 B 474 ASN LYS ALA LYS GLN TYR VAL PRO VAL THR PRO TYR GLY SEQRES 9 B 474 HIS VAL ILE GLY ASP GLY ILE ILE PHE TYR LEU ALA GLU SEQRES 10 B 474 GLU GLU PHE VAL TYR VAL GLY ARG ALA PRO ALA ALA ASN SEQRES 11 B 474 TRP LEU MET TYR HIS ALA GLN THR GLY GLY TYR ASN VAL SEQRES 12 B 474 ASP ILE VAL HIS ASP ASP ARG SER PRO SER ARG PRO MET SEQRES 13 B 474 GLY LYS PRO VAL GLN ARG ILE SER TRP ARG PHE GLN ILE SEQRES 14 B 474 GLN GLY PRO LYS ALA TRP ASP VAL ILE GLU LYS LEU HIS SEQRES 15 B 474 GLY GLY THR LEU GLU LYS LEU LYS PHE PHE ASN MET ALA SEQRES 16 B 474 GLU MET ASN ILE ALA GLY MET LYS ILE ARG THR LEU ARG SEQRES 17 B 474 HIS GLY MET ALA GLY ALA PRO GLY LEU GLU ILE TRP GLY SEQRES 18 B 474 PRO TYR GLU THR GLN GLU LYS ALA ARG ASN ALA ILE LEU SEQRES 19 B 474 GLU ALA GLY LYS GLU PHE GLY LEU ILE PRO VAL GLY SER SEQRES 20 B 474 ARG ALA TYR PRO SER ASN THR LEU GLU SER GLY TRP ILE SEQRES 21 B 474 PRO SER PRO LEU PRO ALA ILE TYR THR GLY ASP LYS LEU SEQRES 22 B 474 LYS ALA TYR ARG GLU TRP LEU PRO ALA ASN SER TYR GLU SEQRES 23 B 474 ALA SER GLY ALA ILE GLY GLY SER PHE VAL SER SER ASN SEQRES 24 B 474 ILE GLU ASP TYR TYR VAL ASN PRO TYR GLU ILE GLY TYR SEQRES 25 B 474 GLY PRO PHE VAL LYS PHE ASP HIS ASP PHE ILE GLY ARG SEQRES 26 B 474 ASP ALA LEU GLU ALA ILE ASP PRO ALA THR GLN ARG LYS SEQRES 27 B 474 LYS VAL THR LEU ALA TRP ASN GLY ASP ASP MET ALA LYS SEQRES 28 B 474 ILE TYR ALA SER LEU PHE ASP THR GLU ALA ASP ALA HIS SEQRES 29 B 474 TYR LYS PHE PHE ASP LEU PRO LEU ALA ASN TYR ALA ASN SEQRES 30 B 474 THR ASN ALA ASP ALA VAL LEU ASP ALA ALA GLY ASN VAL SEQRES 31 B 474 VAL GLY MET SER MET PHE THR GLY TYR SER TYR ASN GLU SEQRES 32 B 474 LYS ARG ALA LEU SER LEU ALA THR ILE ASP HIS GLU ILE SEQRES 33 B 474 PRO VAL GLY THR GLU LEU THR VAL LEU TRP GLY GLU GLU SEQRES 34 B 474 ASN GLY GLY THR ARG LYS THR THR VAL GLU PRO HIS LYS SEQRES 35 B 474 GLN MET ALA VAL ARG ALA VAL VAL SER PRO VAL PRO TYR SEQRES 36 B 474 SER VAL THR ALA ARG GLU THR TYR GLU GLY GLY TRP ARG SEQRES 37 B 474 LYS ALA ALA VAL THR ALA HET THG A 501 32 HET DHB A 502 11 HET EDO A 503 4 HET EDO A 504 4 HET TRS A 505 8 HET THG B 501 32 HET DHB B 502 11 HET EDO B 503 4 HET EDO B 504 4 HET TRS B 505 8 HETNAM THG (6S)-5,6,7,8-TETRAHYDROFOLATE HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 3 THG 2(C19 H23 N7 O6) FORMUL 4 DHB 2(C7 H6 O4) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 7 TRS 2(C4 H12 N O3 1+) FORMUL 13 HOH *430(H2 O) HELIX 1 AA1 ASN A 6 GLY A 14 1 9 HELIX 2 AA2 ASN A 16 ASN A 23 1 8 HELIX 3 AA3 ASN A 40 SER A 51 1 12 HELIX 4 AA4 ASP A 70 MET A 79 1 10 HELIX 5 AA5 ARG A 122 GLY A 136 1 15 HELIX 6 AA6 LYS A 170 GLY A 180 1 11 HELIX 7 AA7 THR A 222 LYS A 235 1 14 HELIX 8 AA8 ALA A 246 PRO A 248 5 3 HELIX 9 AA9 SER A 249 GLY A 255 1 7 HELIX 10 AB1 GLY A 267 LYS A 269 5 3 HELIX 11 AB2 LEU A 270 LEU A 277 1 8 HELIX 12 AB3 SER A 281 GLY A 286 1 6 HELIX 13 AB4 ASN A 296 TYR A 301 5 6 HELIX 14 AB5 ASN A 303 GLY A 308 5 6 HELIX 15 AB6 TYR A 309 VAL A 313 5 5 HELIX 16 AB7 GLY A 321 ALA A 327 1 7 HELIX 17 AB8 ASP A 329 GLN A 333 5 5 HELIX 18 AB9 ASN A 342 SER A 352 1 11 HELIX 19 AC1 LEU A 353 ASP A 355 5 3 HELIX 20 AC2 ASN B 6 GLY B 14 1 9 HELIX 21 AC3 ASN B 16 ASN B 23 1 8 HELIX 22 AC4 ASN B 40 SER B 51 1 12 HELIX 23 AC5 ASP B 70 MET B 79 1 10 HELIX 24 AC6 ARG B 122 GLY B 136 1 15 HELIX 25 AC7 LYS B 170 GLY B 180 1 11 HELIX 26 AC8 THR B 222 LYS B 235 1 14 HELIX 27 AC9 ALA B 246 PRO B 248 5 3 HELIX 28 AD1 SER B 249 GLY B 255 1 7 HELIX 29 AD2 GLY B 267 LYS B 269 5 3 HELIX 30 AD3 LEU B 270 LEU B 277 1 8 HELIX 31 AD4 SER B 281 GLY B 286 1 6 HELIX 32 AD5 ASN B 296 TYR B 301 5 6 HELIX 33 AD6 ASN B 303 GLY B 308 5 6 HELIX 34 AD7 TYR B 309 VAL B 313 5 5 HELIX 35 AD8 GLY B 321 ALA B 327 1 7 HELIX 36 AD9 ASP B 329 GLN B 333 5 5 HELIX 37 AE1 ASN B 342 SER B 352 1 11 HELIX 38 AE2 LEU B 353 ASP B 355 5 3 SHEET 1 AA1 6 MET A 191 ILE A 196 0 SHEET 2 AA1 6 MET A 199 ARG A 205 -1 O ILE A 201 N MET A 194 SHEET 3 AA1 6 LEU A 214 PRO A 219 -1 O GLU A 215 N LEU A 204 SHEET 4 AA1 6 SER A 161 GLN A 167 -1 N PHE A 164 O ILE A 216 SHEET 5 AA1 6 ALA A 52 ASP A 56 -1 N PHE A 55 O GLN A 165 SHEET 6 AA1 6 LEU A 239 PRO A 241 1 O ILE A 240 N LEU A 54 SHEET 1 AA2 5 ALA A 91 TYR A 94 0 SHEET 2 AA2 5 GLY A 107 ALA A 113 -1 O ILE A 109 N LYS A 92 SHEET 3 AA2 5 GLU A 116 GLY A 121 -1 O VAL A 118 N PHE A 110 SHEET 4 AA2 5 VAL A 62 ARG A 67 -1 N ILE A 66 O PHE A 117 SHEET 5 AA2 5 ASP A 141 ASP A 145 -1 O ASP A 145 N ASP A 63 SHEET 1 AA3 2 ILE A 288 GLY A 289 0 SHEET 2 AA3 2 THR A 375 ASN A 376 1 O THR A 375 N GLY A 289 SHEET 1 AA4 7 LYS A 335 TRP A 341 0 SHEET 2 AA4 7 ARG A 402 ILE A 409 -1 O SER A 405 N LEU A 339 SHEET 3 AA4 7 VAL A 387 SER A 397 -1 N MET A 392 O LEU A 406 SHEET 4 AA4 7 ASP A 378 LEU A 381 -1 N VAL A 380 O VAL A 388 SHEET 5 AA4 7 GLU A 418 TRP A 423 -1 O THR A 420 N LEU A 381 SHEET 6 AA4 7 MET A 441 SER A 448 -1 O MET A 441 N TRP A 423 SHEET 7 AA4 7 LYS A 335 TRP A 341 -1 N THR A 338 O SER A 448 SHEET 1 AA5 6 MET B 191 ILE B 196 0 SHEET 2 AA5 6 MET B 199 ARG B 205 -1 O ILE B 201 N MET B 194 SHEET 3 AA5 6 LEU B 214 PRO B 219 -1 O GLU B 215 N LEU B 204 SHEET 4 AA5 6 SER B 161 GLN B 167 -1 N PHE B 164 O ILE B 216 SHEET 5 AA5 6 ALA B 52 ASP B 56 -1 N PHE B 55 O GLN B 165 SHEET 6 AA5 6 LEU B 239 PRO B 241 1 O ILE B 240 N ALA B 52 SHEET 1 AA6 5 ALA B 91 TYR B 94 0 SHEET 2 AA6 5 GLY B 107 ALA B 113 -1 O ILE B 109 N LYS B 92 SHEET 3 AA6 5 GLU B 116 GLY B 121 -1 O VAL B 118 N PHE B 110 SHEET 4 AA6 5 VAL B 62 ARG B 67 -1 N VAL B 62 O GLY B 121 SHEET 5 AA6 5 ASP B 141 ASP B 145 -1 O ASP B 141 N ARG B 67 SHEET 1 AA7 2 ILE B 288 GLY B 289 0 SHEET 2 AA7 2 THR B 375 ASN B 376 1 O THR B 375 N GLY B 289 SHEET 1 AA8 7 LYS B 335 TRP B 341 0 SHEET 2 AA8 7 ARG B 402 ILE B 409 -1 O SER B 405 N LEU B 339 SHEET 3 AA8 7 VAL B 387 SER B 397 -1 N MET B 392 O LEU B 406 SHEET 4 AA8 7 ASP B 378 LEU B 381 -1 N ASP B 378 O SER B 391 SHEET 5 AA8 7 GLU B 418 TRP B 423 -1 O THR B 420 N LEU B 381 SHEET 6 AA8 7 MET B 441 SER B 448 -1 O MET B 441 N TRP B 423 SHEET 7 AA8 7 LYS B 335 TRP B 341 -1 N THR B 338 O SER B 448 CISPEP 1 LEU A 367 PRO A 368 0 3.56 CISPEP 2 VAL A 450 PRO A 451 0 -3.04 CISPEP 3 LEU B 367 PRO B 368 0 2.82 CISPEP 4 VAL B 450 PRO B 451 0 -0.71 SITE 1 AC1 18 GLN A 57 MET A 61 LYS A 92 GLN A 93 SITE 2 AC1 18 ILE A 108 PHE A 110 VAL A 120 GLN A 165 SITE 3 AC1 18 PHE A 188 PHE A 189 GLU A 215 TRP A 256 SITE 4 AC1 18 PHE A 312 DHB A 502 HOH A 635 HOH A 652 SITE 5 AC1 18 HOH A 703 HOH A 738 SITE 1 AC2 9 TYR A 31 HIS A 60 ARG A 122 TYR A 247 SITE 2 AC2 9 ASN A 250 TRP A 256 PRO A 258 THG A 501 SITE 3 AC2 9 HOH A 618 SITE 1 AC3 6 GLY A 289 ASN A 371 TYR A 372 ASN A 376 SITE 2 AC3 6 ASP A 378 HOH A 621 SITE 1 AC4 7 LEU A 261 TYR A 265 TYR A 282 GLY A 286 SITE 2 AC4 7 ALA A 287 ASN A 374 THR A 375 SITE 1 AC5 9 GLY A 428 GLY A 429 THR A 430 ARG A 431 SITE 2 AC5 9 VAL A 435 GLU A 436 PRO A 437 HOH A 687 SITE 3 AC5 9 HOH B 724 SITE 1 AC6 18 GLN B 57 MET B 61 LYS B 92 GLN B 93 SITE 2 AC6 18 ILE B 108 PHE B 110 VAL B 120 GLN B 165 SITE 3 AC6 18 PHE B 188 PHE B 189 HIS B 206 GLU B 215 SITE 4 AC6 18 TRP B 256 PHE B 312 DHB B 502 HOH B 617 SITE 5 AC6 18 HOH B 670 HOH B 751 SITE 1 AC7 9 TYR B 31 HIS B 60 ARG B 122 TYR B 247 SITE 2 AC7 9 ASN B 250 TRP B 256 PRO B 258 THG B 501 SITE 3 AC7 9 HOH B 619 SITE 1 AC8 7 GLY B 289 GLY B 290 ASN B 371 TYR B 372 SITE 2 AC8 7 ASN B 376 ASP B 378 HOH B 629 SITE 1 AC9 7 LEU B 261 TYR B 265 TYR B 282 GLY B 286 SITE 2 AC9 7 ALA B 287 ASN B 374 THR B 375 SITE 1 AD1 8 GLY B 428 THR B 430 ARG B 431 LYS B 432 SITE 2 AD1 8 VAL B 435 GLU B 436 PRO B 437 HOH B 739 CRYST1 115.464 115.464 225.195 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008661 0.005000 0.000000 0.00000 SCALE2 0.000000 0.010001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004441 0.00000