HEADER HYDROLASE 27-JAN-17 5X1X TITLE SOLUTION NMR STRUCTURE OF DNA MISMATCH REPAIR PROTEIN MUTT (FAMILY TITLE 2 NUDIX HYDROLASE) FROM METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS 252 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTATOR MUTT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.55; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MN8; SOURCE 3 ORGANISM_TAXID: 548470; SOURCE 4 VARIANT: MRSA252; SOURCE 5 ATCC: NCTC13277; SOURCE 6 CELL: BACTERIAL; SOURCE 7 GENE: HMPREF0769_10658; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_CELL: BACTERIAL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PSPEEDET KEYWDS DIVALENT ION (MG2+, CA2+) BINDING PROTEIN, ADENOSINE MONOPHOSPHATE KEYWDS 2 (AMP) BINDING PROTEIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.WAHAB,S.DURRESHAHWAR,H.SCHWALBE,C.RICHTER,M.I.CHOUDHARY REVDAT 3 15-MAY-24 5X1X 1 REMARK REVDAT 2 14-JUN-23 5X1X 1 COMPND REMARK REVDAT 1 22-FEB-17 5X1X 0 JRNL AUTH A.WAHAB JRNL TITL SOLUTION NMR STRUCTURE OF DNA MISMATCH REPAIR PROTEIN MUTT JRNL TITL 2 (FAMILY NUDIX HYDROLASE) FROM METHICILLIN RESISTANT JRNL TITL 3 STAPHYLOCOCCUS AUREUS 252 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002770. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 25 MM SODIUM PHOSPHATE, 100 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] DNA REMARK 210 MISMATCH REPAIR PROTEIN MUTT REMARK 210 FROM NUDIX HYDROLASE FAMILY, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HNHA; 3D REMARK 210 CC(CO)NH; 3D (H)CC(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : ASCEND; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.6 PL5, TOPSPIN 3.5 REMARK 210 PL5, CARA, SPARKY SPARKY 3, REMARK 210 CYANA 3.97 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 120.75 -171.89 REMARK 500 1 ARG A 23 -169.57 -74.84 REMARK 500 1 SER A 24 -168.66 -67.13 REMARK 500 1 MET A 27 -175.42 -58.67 REMARK 500 1 LEU A 29 53.34 33.78 REMARK 500 1 GLU A 34 146.13 -179.85 REMARK 500 1 SER A 101 -176.14 176.94 REMARK 500 1 LEU A 113 40.83 -92.00 REMARK 500 1 ASN A 114 105.75 -23.68 REMARK 500 2 LYS A 2 -169.63 -79.65 REMARK 500 2 ARG A 23 -75.84 -62.01 REMARK 500 2 SER A 24 -167.71 -161.40 REMARK 500 2 MET A 27 -178.09 -64.57 REMARK 500 2 LEU A 96 19.92 57.84 REMARK 500 2 LYS A 100 -60.20 -104.50 REMARK 500 2 SER A 101 -172.29 176.90 REMARK 500 2 SER A 106 -177.59 -67.58 REMARK 500 2 LEU A 113 40.93 -91.88 REMARK 500 2 ASN A 114 104.43 -23.58 REMARK 500 3 SER A 24 33.84 71.90 REMARK 500 3 MET A 27 -79.24 -95.23 REMARK 500 3 LEU A 29 73.98 -112.71 REMARK 500 3 GLU A 34 -178.19 -176.51 REMARK 500 3 GLU A 56 -63.88 -94.25 REMARK 500 3 VAL A 68 -63.08 -99.04 REMARK 500 3 LYS A 86 105.70 -56.69 REMARK 500 3 LEU A 96 18.22 59.91 REMARK 500 3 LYS A 100 -61.46 -106.17 REMARK 500 3 SER A 101 -177.45 177.71 REMARK 500 3 LEU A 113 44.40 -88.48 REMARK 500 3 ASN A 114 108.99 -24.39 REMARK 500 3 ALA A 116 165.34 -49.69 REMARK 500 4 LYS A 3 97.76 -66.86 REMARK 500 4 SER A 24 -169.82 -160.28 REMARK 500 4 MET A 27 -175.26 -59.15 REMARK 500 4 LEU A 29 52.33 33.80 REMARK 500 4 GLU A 34 148.03 -176.48 REMARK 500 4 ASN A 43 40.17 -108.20 REMARK 500 4 GLU A 56 -60.98 -90.53 REMARK 500 4 LYS A 100 -60.65 -103.71 REMARK 500 4 SER A 101 -177.97 175.70 REMARK 500 4 LEU A 113 43.74 -88.55 REMARK 500 4 ASN A 114 110.60 -24.41 REMARK 500 5 SER A 24 -166.05 -173.22 REMARK 500 5 LEU A 29 51.87 37.95 REMARK 500 5 LEU A 62 109.30 -42.66 REMARK 500 5 TYR A 75 -168.78 -114.36 REMARK 500 5 SER A 101 -172.12 178.26 REMARK 500 5 LEU A 113 40.15 -93.21 REMARK 500 5 ASN A 114 103.34 -23.34 REMARK 500 REMARK 500 THIS ENTRY HAS 208 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36048 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF DNA MISMATCH REPAIR PROTEIN MUTT (FAMILY REMARK 900 NUDIX HYDROLASE) FROM METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS REMARK 900 252 DBREF1 5X1X A 1 130 UNP A0A0E1XLJ5_STAAU DBREF2 5X1X A A0A0E1XLJ5 1 130 SEQRES 1 A 130 MET LYS LYS VAL ILE ASN VAL VAL GLY ALA ILE ILE PHE SEQRES 2 A 130 SER ASP ASN LYS ILE LEU CYS ALA GLN ARG SER GLU LYS SEQRES 3 A 130 MET SER LEU PRO LEU MET TRP GLU PHE PRO GLY GLY LYS SEQRES 4 A 130 VAL GLU LYS ASN GLU THR GLU LYS ASP ALA LEU ILE ARG SEQRES 5 A 130 GLU ILE ARG GLU GLU MET LYS CYS ASP LEU ILE VAL GLY SEQRES 6 A 130 ASP LYS VAL ILE THR THR GLU HIS GLU TYR ASP PHE GLY SEQRES 7 A 130 ILE VAL ARG LEU THR THR TYR LYS CYS THR LEU ASN LYS SEQRES 8 A 130 GLU LEU PRO THR LEU THR GLU HIS LYS SER ILE GLU TRP SEQRES 9 A 130 LEU SER ILE ASN GLU LEU ASP LYS LEU ASN TRP ALA PRO SEQRES 10 A 130 ALA ASP ILE PRO ALA VAL ASN LYS ILE MET THR GLU GLY HELIX 1 AA1 LYS A 47 GLU A 57 1 11 HELIX 2 AA2 GLU A 109 ASN A 114 5 6 HELIX 3 AA3 ASP A 119 THR A 128 1 10 SHEET 1 AA1 4 VAL A 4 VAL A 8 0 SHEET 2 AA1 4 GLY A 78 THR A 88 1 O ILE A 79 N ILE A 5 SHEET 3 AA1 4 ILE A 11 SER A 14 1 N ILE A 11 O CYS A 87 SHEET 4 AA1 4 LYS A 17 ILE A 18 -1 O LYS A 17 N SER A 14 SHEET 1 AA2 3 VAL A 4 VAL A 8 0 SHEET 2 AA2 3 GLY A 78 THR A 88 1 O ILE A 79 N ILE A 5 SHEET 3 AA2 3 VAL A 64 TYR A 75 -1 N GLY A 65 O LYS A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1