HEADER CELL ADHESION 31-JAN-17 5X2D TITLE CRYSTAL STRUCTURE OF DLC LIKE DOMAIN OF CSTAL3 (83-177AA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEGUMENTAL PROTEIN 20.8 KDA; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: DYNEIN LIGHT CHAIN LIKE DOMAIN, UNP RESIDUES 83-177; COMPND 5 SYNONYM: CSTAL3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLONORCHIS SINENSIS; SOURCE 3 ORGANISM_COMMON: CHINESE LIVER FLUKE; SOURCE 4 ORGANISM_TAXID: 79923; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM-BINDING PROTEIN, TEGUMENT PROTEIN, CSTAL3, DYNEIN LIGHT KEYWDS 2 CHAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.H.JO,K.Y.HWANG REVDAT 4 03-APR-24 5X2D 1 REMARK REVDAT 3 27-MAR-24 5X2D 1 REMARK REVDAT 2 27-SEP-17 5X2D 1 REMARK REVDAT 1 30-AUG-17 5X2D 0 JRNL AUTH C.H.JO,J.SON,S.KIM,T.ODA,J.KIM,M.R.LEE,M.SATO,H.T.KIM, JRNL AUTH 2 S.UNZAI,S.Y.PARK,K.Y.HWANG JRNL TITL STRUCTURAL INSIGHTS INTO A 20.8-KDA TEGUMENTAL-ALLERGEN-LIKE JRNL TITL 2 (TAL) PROTEIN FROM CLONORCHIS SINENSIS JRNL REF SCI REP V. 7 1764 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28496122 JRNL DOI 10.1038/S41598-017-02044-0 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 12685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1345 - 5.4063 0.99 1407 166 0.2038 0.2668 REMARK 3 2 5.4063 - 4.2920 1.00 1350 150 0.1830 0.1966 REMARK 3 3 4.2920 - 3.7497 0.99 1324 146 0.1883 0.2505 REMARK 3 4 3.7497 - 3.4070 0.99 1292 147 0.2246 0.2534 REMARK 3 5 3.4070 - 3.1628 0.97 1280 146 0.2537 0.3032 REMARK 3 6 3.1628 - 2.9764 0.96 1257 141 0.3119 0.3637 REMARK 3 7 2.9764 - 2.8274 0.93 1235 142 0.3077 0.3502 REMARK 3 8 2.8274 - 2.7043 0.89 1157 121 0.3241 0.3573 REMARK 3 9 2.7043 - 2.6002 0.84 1105 119 0.3682 0.3796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2340 REMARK 3 ANGLE : 1.582 3183 REMARK 3 CHIRALITY : 0.073 351 REMARK 3 PLANARITY : 0.008 405 REMARK 3 DIHEDRAL : 15.723 846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5817 -31.9271 -5.5342 REMARK 3 T TENSOR REMARK 3 T11: 0.9575 T22: 0.9035 REMARK 3 T33: 1.2600 T12: -0.1100 REMARK 3 T13: -0.5960 T23: 0.5136 REMARK 3 L TENSOR REMARK 3 L11: 5.1099 L22: 7.5978 REMARK 3 L33: 5.9901 L12: 2.5357 REMARK 3 L13: -0.7996 L23: -3.8793 REMARK 3 S TENSOR REMARK 3 S11: 0.6263 S12: -1.2775 S13: -1.2257 REMARK 3 S21: 0.6590 S22: -0.0916 S23: 0.0442 REMARK 3 S31: 0.7680 S32: -0.5009 S33: -0.3634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4486 -28.1807 -2.4717 REMARK 3 T TENSOR REMARK 3 T11: 0.9986 T22: 1.2177 REMARK 3 T33: 0.9409 T12: -0.2952 REMARK 3 T13: -0.2521 T23: 0.7280 REMARK 3 L TENSOR REMARK 3 L11: 2.2334 L22: 1.2670 REMARK 3 L33: 2.3751 L12: -0.9181 REMARK 3 L13: 0.9340 L23: 0.0983 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.9724 S13: -0.6180 REMARK 3 S21: 0.6497 S22: 0.3102 S23: 0.4165 REMARK 3 S31: 0.5147 S32: -1.0873 S33: -0.4684 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9134 -20.5706 -7.0242 REMARK 3 T TENSOR REMARK 3 T11: 0.7314 T22: 1.1388 REMARK 3 T33: 0.6945 T12: -0.0517 REMARK 3 T13: 0.1572 T23: 0.4865 REMARK 3 L TENSOR REMARK 3 L11: 3.1090 L22: 4.6714 REMARK 3 L33: 2.8944 L12: 2.5830 REMARK 3 L13: 0.1896 L23: 0.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.8566 S12: -1.6830 S13: 0.0485 REMARK 3 S21: 0.8256 S22: -0.4157 S23: 0.8040 REMARK 3 S31: 0.3743 S32: -1.5617 S33: -0.3443 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0131 -20.7040 -12.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.5047 T22: 0.7173 REMARK 3 T33: 1.1989 T12: -0.1695 REMARK 3 T13: -0.2451 T23: 0.6025 REMARK 3 L TENSOR REMARK 3 L11: 8.9762 L22: 7.4929 REMARK 3 L33: 8.6948 L12: 7.5264 REMARK 3 L13: 3.8001 L23: 5.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.5300 S12: -0.0673 S13: 0.1107 REMARK 3 S21: -0.2277 S22: 0.0769 S23: 0.5531 REMARK 3 S31: 0.0267 S32: -0.3637 S33: -0.2009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0546 -26.8416 -20.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.6540 T22: 0.7186 REMARK 3 T33: 1.4511 T12: 0.0589 REMARK 3 T13: -0.5194 T23: 0.2071 REMARK 3 L TENSOR REMARK 3 L11: 1.4443 L22: 2.4569 REMARK 3 L33: 2.0985 L12: 0.6589 REMARK 3 L13: 1.0720 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: 0.5281 S12: 0.1709 S13: -0.8637 REMARK 3 S21: -0.0949 S22: 0.2788 S23: 0.5810 REMARK 3 S31: 0.8255 S32: -0.3174 S33: -0.5613 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8626 -32.7319 -9.9185 REMARK 3 T TENSOR REMARK 3 T11: 0.8311 T22: 0.6584 REMARK 3 T33: 1.1446 T12: -0.1115 REMARK 3 T13: -0.5295 T23: 0.4829 REMARK 3 L TENSOR REMARK 3 L11: 1.6875 L22: 5.5438 REMARK 3 L33: 5.3463 L12: -0.0505 REMARK 3 L13: -0.1838 L23: -4.3633 REMARK 3 S TENSOR REMARK 3 S11: 0.4593 S12: -0.0060 S13: -0.6378 REMARK 3 S21: -0.4644 S22: 0.0893 S23: 0.6130 REMARK 3 S31: 0.8735 S32: -0.5513 S33: -0.8220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5109 -22.5002 -12.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.7135 REMARK 3 T33: 1.2016 T12: -0.1441 REMARK 3 T13: -0.2856 T23: 0.5322 REMARK 3 L TENSOR REMARK 3 L11: 6.5441 L22: 8.1543 REMARK 3 L33: 5.9140 L12: 5.0235 REMARK 3 L13: -0.0016 L23: -1.1475 REMARK 3 S TENSOR REMARK 3 S11: 0.4401 S12: 0.2314 S13: -0.0006 REMARK 3 S21: -0.1413 S22: 0.0998 S23: 0.1780 REMARK 3 S31: 0.0555 S32: -0.0897 S33: -0.3107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4275 -10.2585 -10.8232 REMARK 3 T TENSOR REMARK 3 T11: 0.9664 T22: 1.7112 REMARK 3 T33: 1.4453 T12: 0.2673 REMARK 3 T13: 0.3267 T23: 0.9580 REMARK 3 L TENSOR REMARK 3 L11: 3.7263 L22: 9.1292 REMARK 3 L33: 3.1872 L12: 5.1313 REMARK 3 L13: -2.5089 L23: -2.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.4030 S12: -0.7750 S13: -0.2002 REMARK 3 S21: 0.9706 S22: 0.0965 S23: 0.5777 REMARK 3 S31: -0.2906 S32: -0.2865 S33: -0.4347 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6975 -5.3133 -14.1538 REMARK 3 T TENSOR REMARK 3 T11: 0.7926 T22: 1.0426 REMARK 3 T33: 0.9369 T12: 0.0101 REMARK 3 T13: 0.3618 T23: 0.6899 REMARK 3 L TENSOR REMARK 3 L11: 2.7838 L22: 2.0204 REMARK 3 L33: 2.1182 L12: 1.0103 REMARK 3 L13: -1.6366 L23: -0.2346 REMARK 3 S TENSOR REMARK 3 S11: 0.2915 S12: -0.4674 S13: 0.1267 REMARK 3 S21: 0.5854 S22: 0.3032 S23: 0.7719 REMARK 3 S31: -0.5600 S32: -0.5561 S33: -0.3509 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7443 7.3586 -18.4376 REMARK 3 T TENSOR REMARK 3 T11: 1.0513 T22: 1.5609 REMARK 3 T33: 1.6321 T12: 0.6695 REMARK 3 T13: 0.3427 T23: 0.5170 REMARK 3 L TENSOR REMARK 3 L11: 2.2312 L22: 7.4557 REMARK 3 L33: 1.2359 L12: -4.0788 REMARK 3 L13: 1.6607 L23: -3.0356 REMARK 3 S TENSOR REMARK 3 S11: -0.2700 S12: -0.5252 S13: 0.0804 REMARK 3 S21: 0.4761 S22: 0.7605 S23: 0.5181 REMARK 3 S31: -0.6149 S32: -1.0610 S33: -0.4931 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6728 8.4698 -17.5636 REMARK 3 T TENSOR REMARK 3 T11: 1.2420 T22: 1.0203 REMARK 3 T33: 0.9581 T12: 0.3484 REMARK 3 T13: 0.5235 T23: 0.1540 REMARK 3 L TENSOR REMARK 3 L11: 5.1907 L22: 2.3344 REMARK 3 L33: 1.7094 L12: 0.2422 REMARK 3 L13: -1.5451 L23: -0.7048 REMARK 3 S TENSOR REMARK 3 S11: -0.4951 S12: -1.3048 S13: 1.4443 REMARK 3 S21: 1.0559 S22: 0.9335 S23: 0.4088 REMARK 3 S31: -1.4714 S32: -1.1551 S33: -0.3850 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0199 -2.9508 -27.1047 REMARK 3 T TENSOR REMARK 3 T11: 0.6466 T22: 0.6564 REMARK 3 T33: 1.2584 T12: 0.1286 REMARK 3 T13: 0.1354 T23: 0.7121 REMARK 3 L TENSOR REMARK 3 L11: 3.0664 L22: 0.7337 REMARK 3 L33: 1.8818 L12: -1.0489 REMARK 3 L13: 0.3083 L23: 0.6572 REMARK 3 S TENSOR REMARK 3 S11: 0.5986 S12: -0.0992 S13: 0.2291 REMARK 3 S21: -0.1854 S22: 0.3636 S23: 0.5683 REMARK 3 S31: 0.0377 S32: -0.7954 S33: -0.2050 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6314 -2.4555 -21.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.4994 T22: 0.8024 REMARK 3 T33: 1.1032 T12: -0.0911 REMARK 3 T13: 0.2513 T23: 0.7449 REMARK 3 L TENSOR REMARK 3 L11: 2.1836 L22: 2.7691 REMARK 3 L33: 2.8014 L12: 1.0109 REMARK 3 L13: -1.1664 L23: -1.6854 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: 0.0746 S13: 0.2040 REMARK 3 S21: -0.1671 S22: 0.3841 S23: 0.5279 REMARK 3 S31: -0.1425 S32: -0.6788 S33: -0.2656 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 83 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3587 -24.6608 -41.4765 REMARK 3 T TENSOR REMARK 3 T11: 1.4831 T22: 1.0462 REMARK 3 T33: 1.4986 T12: -0.3128 REMARK 3 T13: -0.8877 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 4.6098 L22: 1.7547 REMARK 3 L33: 7.4083 L12: 2.1267 REMARK 3 L13: 2.2276 L23: 3.0974 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: 0.6728 S13: -0.0886 REMARK 3 S21: -0.5111 S22: 0.2328 S23: 0.3662 REMARK 3 S31: 0.1655 S32: 0.0243 S33: -0.0888 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 89 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1371 -22.4963 -37.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.9660 T22: 0.7469 REMARK 3 T33: 0.9100 T12: -0.0267 REMARK 3 T13: -0.7102 T23: 0.1360 REMARK 3 L TENSOR REMARK 3 L11: 3.1725 L22: 1.6894 REMARK 3 L33: 2.4694 L12: 0.5817 REMARK 3 L13: 1.0598 L23: 1.2802 REMARK 3 S TENSOR REMARK 3 S11: 0.4309 S12: 0.6376 S13: -0.6512 REMARK 3 S21: -0.4510 S22: 0.1238 S23: 0.3073 REMARK 3 S31: 0.7756 S32: 0.2044 S33: -0.3148 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 113 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4812 -40.0731 -32.8610 REMARK 3 T TENSOR REMARK 3 T11: 2.1798 T22: 0.7214 REMARK 3 T33: 1.7092 T12: 0.0741 REMARK 3 T13: -0.7197 T23: -0.1020 REMARK 3 L TENSOR REMARK 3 L11: 4.6286 L22: 4.9542 REMARK 3 L33: 2.6836 L12: -4.3478 REMARK 3 L13: 3.3114 L23: -3.6336 REMARK 3 S TENSOR REMARK 3 S11: 0.4095 S12: 0.4391 S13: -0.5489 REMARK 3 S21: -2.0222 S22: 0.0429 S23: -0.0885 REMARK 3 S31: 1.9401 S32: 0.1295 S33: -0.4608 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0236 -29.1862 -33.8297 REMARK 3 T TENSOR REMARK 3 T11: 1.1795 T22: 0.8160 REMARK 3 T33: 0.9532 T12: 0.3156 REMARK 3 T13: -0.4802 T23: -0.3592 REMARK 3 L TENSOR REMARK 3 L11: 5.2454 L22: 8.6308 REMARK 3 L33: 2.1385 L12: 4.1965 REMARK 3 L13: 0.3119 L23: 1.4662 REMARK 3 S TENSOR REMARK 3 S11: 0.4748 S12: 0.3532 S13: -1.1059 REMARK 3 S21: -1.7990 S22: -0.1678 S23: -1.2634 REMARK 3 S31: 1.5990 S32: 0.5651 S33: -0.2987 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 136 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3464 -22.5299 -29.4648 REMARK 3 T TENSOR REMARK 3 T11: 0.7514 T22: 0.4356 REMARK 3 T33: 0.9212 T12: 0.0382 REMARK 3 T13: -0.6110 T23: -0.0917 REMARK 3 L TENSOR REMARK 3 L11: 3.0841 L22: 6.2086 REMARK 3 L33: 7.1117 L12: 2.9119 REMARK 3 L13: -3.5730 L23: -3.9479 REMARK 3 S TENSOR REMARK 3 S11: 0.3222 S12: -0.1578 S13: -0.1741 REMARK 3 S21: -0.0669 S22: 0.2345 S23: 0.0356 REMARK 3 S31: 0.2299 S32: 0.3666 S33: -0.0710 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1187 -20.4357 -20.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.6920 T22: 0.7354 REMARK 3 T33: 1.3881 T12: 0.0201 REMARK 3 T13: -0.4232 T23: 0.4146 REMARK 3 L TENSOR REMARK 3 L11: 1.2501 L22: 1.5697 REMARK 3 L33: 1.1290 L12: 1.0610 REMARK 3 L13: 0.2176 L23: 0.1212 REMARK 3 S TENSOR REMARK 3 S11: 0.5279 S12: -0.1391 S13: -0.9236 REMARK 3 S21: -0.0872 S22: 0.3942 S23: 0.3272 REMARK 3 S31: 0.8174 S32: -0.6168 S33: -0.5639 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9235 -24.5148 -29.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.8434 T22: 0.6495 REMARK 3 T33: 1.0667 T12: -0.1304 REMARK 3 T13: -0.7648 T23: 0.1417 REMARK 3 L TENSOR REMARK 3 L11: 3.8421 L22: 1.8078 REMARK 3 L33: 3.5181 L12: 0.5472 REMARK 3 L13: 2.1390 L23: 0.0962 REMARK 3 S TENSOR REMARK 3 S11: 0.3254 S12: -0.1006 S13: -0.6131 REMARK 3 S21: 0.0162 S22: 0.2479 S23: 0.1218 REMARK 3 S31: 0.7530 S32: -0.3788 S33: -0.3653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.3_1479 REMARK 200 STARTING MODEL: SAD STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 170 MM MGSO4, 21 % PEG 3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.81550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.81550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.19850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.04100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.19850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.04100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.81550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.19850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.04100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.81550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.19850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.04100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.63100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG C 123 ND2 ASN C 127 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 202 O HOH C 202 6445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 157 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 96 156.12 176.41 REMARK 500 MET B 96 155.87 174.87 REMARK 500 MET C 96 154.78 176.81 REMARK 500 GLN C 116 -52.26 -121.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 117 SER B 118 -137.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X2E RELATED DB: PDB DBREF 5X2D A 83 177 UNP Q2PMV7 Q2PMV7_CLOSI 83 177 DBREF 5X2D B 83 177 UNP Q2PMV7 Q2PMV7_CLOSI 83 177 DBREF 5X2D C 83 177 UNP Q2PMV7 Q2PMV7_CLOSI 83 177 SEQRES 1 A 95 PRO SER LEU PRO PRO GLU ILE ILE VAL ILE SER ALA ASN SEQRES 2 A 95 MET SER LEU GLU ASP GLN ILE LYS ILE ALA ARG GLU THR SEQRES 3 A 95 ILE PRO ILE ALA PRO GLY ALA GLN THR SER GLU GLU LEU SEQRES 4 A 95 GLY ARG LEU THR GLU ASN LEU LYS SER PHE ALA ASP LYS SEQRES 5 A 95 THR PHE GLY GLY CYS TRP GLN VAL MET VAL VAL ASP GLY SEQRES 6 A 95 SER TYR TRP ILE THR GLN THR PHE VAL PRO ASN MET SER SEQRES 7 A 95 PHE GLN PHE GLU LEU TYR ASN ARG ALA TYR LEU PHE TRP SEQRES 8 A 95 GLN THR SER GLU SEQRES 1 B 95 PRO SER LEU PRO PRO GLU ILE ILE VAL ILE SER ALA ASN SEQRES 2 B 95 MET SER LEU GLU ASP GLN ILE LYS ILE ALA ARG GLU THR SEQRES 3 B 95 ILE PRO ILE ALA PRO GLY ALA GLN THR SER GLU GLU LEU SEQRES 4 B 95 GLY ARG LEU THR GLU ASN LEU LYS SER PHE ALA ASP LYS SEQRES 5 B 95 THR PHE GLY GLY CYS TRP GLN VAL MET VAL VAL ASP GLY SEQRES 6 B 95 SER TYR TRP ILE THR GLN THR PHE VAL PRO ASN MET SER SEQRES 7 B 95 PHE GLN PHE GLU LEU TYR ASN ARG ALA TYR LEU PHE TRP SEQRES 8 B 95 GLN THR SER GLU SEQRES 1 C 95 PRO SER LEU PRO PRO GLU ILE ILE VAL ILE SER ALA ASN SEQRES 2 C 95 MET SER LEU GLU ASP GLN ILE LYS ILE ALA ARG GLU THR SEQRES 3 C 95 ILE PRO ILE ALA PRO GLY ALA GLN THR SER GLU GLU LEU SEQRES 4 C 95 GLY ARG LEU THR GLU ASN LEU LYS SER PHE ALA ASP LYS SEQRES 5 C 95 THR PHE GLY GLY CYS TRP GLN VAL MET VAL VAL ASP GLY SEQRES 6 C 95 SER TYR TRP ILE THR GLN THR PHE VAL PRO ASN MET SER SEQRES 7 C 95 PHE GLN PHE GLU LEU TYR ASN ARG ALA TYR LEU PHE TRP SEQRES 8 C 95 GLN THR SER GLU FORMUL 4 HOH *19(H2 O) HELIX 1 AA1 SER A 97 ALA A 112 1 16 HELIX 2 AA2 THR A 117 GLY A 137 1 21 HELIX 3 AA3 SER B 97 ALA B 112 1 16 HELIX 4 AA4 THR B 117 GLY B 137 1 21 HELIX 5 AA5 SER C 97 ALA C 112 1 16 HELIX 6 AA6 THR C 117 PHE C 136 1 20 SHEET 1 AA1 8 ILE A 89 ASN A 95 0 SHEET 2 AA1 8 SER A 160 LEU A 165 -1 O GLN A 162 N ILE A 92 SHEET 3 AA1 8 ALA A 169 GLN A 174 -1 O PHE A 172 N PHE A 161 SHEET 4 AA1 8 TRP A 140 ILE A 151 -1 N GLN A 141 O TRP A 173 SHEET 5 AA1 8 TRP C 140 ILE C 151 -1 O ASP C 146 N SER A 148 SHEET 6 AA1 8 ALA C 169 GLN C 174 -1 O TRP C 173 N GLN C 141 SHEET 7 AA1 8 SER C 160 LEU C 165 -1 N PHE C 161 O PHE C 172 SHEET 8 AA1 8 ILE C 89 ASN C 95 -1 N ILE C 92 O GLN C 162 SHEET 1 AA2 4 ILE B 89 ASN B 95 0 SHEET 2 AA2 4 SER B 160 LEU B 165 -1 O GLN B 162 N ILE B 92 SHEET 3 AA2 4 ALA B 169 GLN B 174 -1 O PHE B 172 N PHE B 161 SHEET 4 AA2 4 TRP B 140 VAL B 145 -1 N GLN B 141 O TRP B 173 CISPEP 1 ASP B 146 GLY B 147 0 -21.94 CRYST1 88.397 154.082 61.631 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016226 0.00000